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The map label for this gene is rcaC [H]

Identifier: 157962629

GI number: 157962629

Start: 3430860

End: 3431537

Strand: Direct

Name: rcaC [H]

Synonym: Spea_2809

Alternate gene names: 157962629

Gene position: 3430860-3431537 (Clockwise)

Preceding gene: 157962625

Following gene: 157962630

Centisome position: 66.3

GC content: 45.58

Gene sequence:

>678_bases
ATGATCCGTGTTTTATTGATTGAAGATGATCGCGATCTCGCCGAGACGCTACTCCAATTAATGGAGATGTCACATATGCT
TCCCGATCATGCCAGCAATGGTATTGCAGGGCTTAATTTAGCCAGCAACAATCACTACGATGTACTGGTTATCGATGTCG
GCCTACCAAAACTTGATGGCTATAGTATCTGCAAGCAGTTGCGCGCAAATGGCGCTGATACGCCAATACTTTTTCTAACA
GCCTTCTCCAGTATTGACAACAAGCTAGAAGGGTTTGCCTCAGGAGGAGATGACTACCTTGCTAAGCCCTTCGATAATCG
AGAACTTATTGCTCGTATAACAGCCTTGTCAGGCAGAAAAAGTAGCCATGTAAAACGGCTTGATATCGCGGGCTTAATCA
TGAATTGTGAGCAACAGCAGGTGTCCTATCAAGGACAAACTATTGAGCTTACTCCTGCCTGCTATACCCTGTTAGAAATG
TTGATGCGCGCAAGCCCTGAAGTAGTCAGTCGTCAATCATTAGAAAACAAGTTATGGGGCGACGAGCCGCCAAGCAGTAA
TGTGCTTAAAGCACATATCTATTATTTACGCCGGGCATTAACTCAGGTACAGCTTGCACAAATGCTGTATACCTCTACGG
GAAGAGGTTGGGCACTGCGCCCAAGTAACACACTATGA

Upstream 100 bases:

>100_bases
CTTGAATAACTTTACTCTATATTTACCCTTGAGCCACTAAGCTGTAATCTCCTAGCCCGAATGACTGAAAACAGCTAAAA
ATTTTGATTGGAGAACAGAG

Downstream 100 bases:

>100_bases
AACTTCGGCAGAGCTTAACCGCCTTATTACTCGGGGGCGCTGGTTTTATTCTGTTGCTACTCGTGCTCAGCTACACCCTG
TGGGCAAGAGAGAACTACTT

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MIRVLLIEDDRDLAETLLQLMEMSHMLPDHASNGIAGLNLASNNHYDVLVIDVGLPKLDGYSICKQLRANGADTPILFLT
AFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRKSSHVKRLDIAGLIMNCEQQQVSYQGQTIELTPACYTLLEM
LMRASPEVVSRQSLENKLWGDEPPSSNVLKAHIYYLRRALTQVQLAQMLYTSTGRGWALRPSNTL

Sequences:

>Translated_225_residues
MIRVLLIEDDRDLAETLLQLMEMSHMLPDHASNGIAGLNLASNNHYDVLVIDVGLPKLDGYSICKQLRANGADTPILFLT
AFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRKSSHVKRLDIAGLIMNCEQQQVSYQGQTIELTPACYTLLEM
LMRASPEVVSRQSLENKLWGDEPPSSNVLKAHIYYLRRALTQVQLAQMLYTSTGRGWALRPSNTL
>Mature_225_residues
MIRVLLIEDDRDLAETLLQLMEMSHMLPDHASNGIAGLNLASNNHYDVLVIDVGLPKLDGYSICKQLRANGADTPILFLT
AFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRKSSHVKRLDIAGLIMNCEQQQVSYQGQTIELTPACYTLLEM
LMRASPEVVSRQSLENKLWGDEPPSSNVLKAHIYYLRRALTQVQLAQMLYTSTGRGWALRPSNTL

Specific function: Required for chromatic adaptation. Thought to be a positive regulator of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI1786784, Length=221, Percent_Identity=29.8642533936652, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1789402, Length=220, Percent_Identity=31.8181818181818, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI87082012, Length=219, Percent_Identity=31.5068493150685, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790860, Length=222, Percent_Identity=32.4324324324324, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1790552, Length=224, Percent_Identity=32.5892857142857, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=31.8181818181818, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI2367329, Length=230, Percent_Identity=33.9130434782609, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788394, Length=209, Percent_Identity=30.1435406698565, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1786599, Length=227, Percent_Identity=28.1938325991189, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=27.9279279279279, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789809, Length=233, Percent_Identity=26.6094420600858, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=29.9065420560748, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787229, Length=195, Percent_Identity=28.2051282051282, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788713, Length=142, Percent_Identity=28.169014084507, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790299, Length=173, Percent_Identity=27.1676300578035, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR008207
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01627 Hpt; PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25023; Mature: 25023

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVLLIEDDRDLAETLLQLMEMSHMLPDHASNGIAGLNLASNNHYDVLVIDVGLPKLDG
CEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCH
YSICKQLRANGADTPILFLTAFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRK
HHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCC
SSHVKRLDIAGLIMNCEQQQVSYQGQTIELTPACYTLLEMLMRASPEVVSRQSLENKLWG
CCCHHHHHHHHHHHCCHHHHHHCCCCEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
DEPPSSNVLKAHIYYLRRALTQVQLAQMLYTSTGRGWALRPSNTL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC
>Mature Secondary Structure
MIRVLLIEDDRDLAETLLQLMEMSHMLPDHASNGIAGLNLASNNHYDVLVIDVGLPKLDG
CEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCH
YSICKQLRANGADTPILFLTAFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRK
HHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCC
SSHVKRLDIAGLIMNCEQQQVSYQGQTIELTPACYTLLEMLMRASPEVVSRQSLENKLWG
CCCHHHHHHHHHHHCCHHHHHHCCCCEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
DEPPSSNVLKAHIYYLRRALTQVQLAQMLYTSTGRGWALRPSNTL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1409650 [H]