Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
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Accession | NC_009901 |
Length | 5,174,581 |
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The map label for this gene is 157962479
Identifier: 157962479
GI number: 157962479
Start: 3240197
End: 3240859
Strand: Direct
Name: 157962479
Synonym: Spea_2658
Alternate gene names: NA
Gene position: 3240197-3240859 (Clockwise)
Preceding gene: 157962478
Following gene: 157962480
Centisome position: 62.62
GC content: 40.27
Gene sequence:
>663_bases ATGACAACCAACGAATTAGTTCAAAAGCTCAAGTTACAACTTAAGCAATTAGAGCAAGAGGTATTACAGCACGATTCTCG CTTGCCACCGGGACAACGCAAGATGATGCTGGATGTCGAACGTTTCAATAATGAGCTATTTATTCAGGTTGGCGGCCAGC TCCAGCCGTGTATCGATCAACTATCTAAAAATATTGCCCAACTTGAGCAACTACTCAGGGCAAAGCGATCGCCTTACACC ATAGTGTCGAGCTGCGAGAAAATACAAGATAGATTCAGCGCACTCAAGCGTGCCCTAGCAACCACAAGTATTAATGTTAA ATCAATTGAACAGCAAAAACGTAGCCGCAGAGCTTATGCAATTAAGCGAGGAATTAAGTCTCATAATGAAAGTGGTTTTA ATTGGATCGCCTCAAATGTGATGCAAAATAGCCATCAACTCTATGAAGAACTTAACAAACATTTGAACTGGGCTAAGATT ATTGAACAAAAAATTGAAAATTTGCAATCTTCACTTGAAAACTGTCATAGTGCTGACAAAATCAAGCTGCAGAATGAGAT CCTTACTCTGCATAGTCGACTAGGAAAGTGTCGGCAAGCTACCAGCTATATTGAAGATCGCATCCAACTATTCGAACGAC CTTTTAAGAGTCAAAATCGTTAA
Upstream 100 bases:
>100_bases GTGCACATTCGGCTATTAAGTTTGGCCTACCCTTTATTCGTCCGATTTTCATTACCGTTATACTATTAATAGCAGCGCAG TTAGTTTGGAGTGCTTGGTT
Downstream 100 bases:
>100_bases GGAACAAAAATGAAACCACGTTTAACCATTACCGCACTTCTTGCTCTATGTGGTTCTTCAGCAGCCTTTGCCGCTGACTT CAACATCCCAATGGCTTTCG
Product: primosomal replication protein N''
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MTTNELVQKLKLQLKQLEQEVLQHDSRLPPGQRKMMLDVERFNNELFIQVGGQLQPCIDQLSKNIAQLEQLLRAKRSPYT IVSSCEKIQDRFSALKRALATTSINVKSIEQQKRSRRAYAIKRGIKSHNESGFNWIASNVMQNSHQLYEELNKHLNWAKI IEQKIENLQSSLENCHSADKIKLQNEILTLHSRLGKCRQATSYIEDRIQLFERPFKSQNR
Sequences:
>Translated_220_residues MTTNELVQKLKLQLKQLEQEVLQHDSRLPPGQRKMMLDVERFNNELFIQVGGQLQPCIDQLSKNIAQLEQLLRAKRSPYT IVSSCEKIQDRFSALKRALATTSINVKSIEQQKRSRRAYAIKRGIKSHNESGFNWIASNVMQNSHQLYEELNKHLNWAKI IEQKIENLQSSLENCHSADKIKLQNEILTLHSRLGKCRQATSYIEDRIQLFERPFKSQNR >Mature_219_residues TTNELVQKLKLQLKQLEQEVLQHDSRLPPGQRKMMLDVERFNNELFIQVGGQLQPCIDQLSKNIAQLEQLLRAKRSPYTI VSSCEKIQDRFSALKRALATTSINVKSIEQQKRSRRAYAIKRGIKSHNESGFNWIASNVMQNSHQLYEELNKHLNWAKII EQKIENLQSSLENCHSADKIKLQNEILTLHSRLGKCRQATSYIEDRIQLFERPFKSQNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25697; Mature: 25566
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTNELVQKLKLQLKQLEQEVLQHDSRLPPGQRKMMLDVERFNNELFIQVGGQLQPCIDQ CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHH LSKNIAQLEQLLRAKRSPYTIVSSCEKIQDRFSALKRALATTSINVKSIEQQKRSRRAYA HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH IKRGIKSHNESGFNWIASNVMQNSHQLYEELNKHLNWAKIIEQKIENLQSSLENCHSADK HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHH IKLQNEILTLHSRLGKCRQATSYIEDRIQLFERPFKSQNR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TTNELVQKLKLQLKQLEQEVLQHDSRLPPGQRKMMLDVERFNNELFIQVGGQLQPCIDQ CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHH LSKNIAQLEQLLRAKRSPYTIVSSCEKIQDRFSALKRALATTSINVKSIEQQKRSRRAYA HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH IKRGIKSHNESGFNWIASNVMQNSHQLYEELNKHLNWAKIIEQKIENLQSSLENCHSADK HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHH IKLQNEILTLHSRLGKCRQATSYIEDRIQLFERPFKSQNR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA