| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is dinG [H]
Identifier: 157962477
GI number: 157962477
Start: 3237346
End: 3239418
Strand: Direct
Name: dinG [H]
Synonym: Spea_2656
Alternate gene names: 157962477
Gene position: 3237346-3239418 (Clockwise)
Preceding gene: 157962467
Following gene: 157962478
Centisome position: 62.56
GC content: 46.45
Gene sequence:
>2073_bases ATGTTATCCGCAGACGTTAAAACTCAAATTCGTACTATATATAAAGGCATTTCTACATCTTTGCCTAACTTTCGCCCTCG TCGAGAGCAGAACTATATTGTTGCGGAAATATCAAAAACGCTTGCGGGTGAGTACGACAAGAATCGCCGAATTATTGTGG TTGAAGCGGGCACGGGTATCGGTAAGTCGCTGGCTTATATCCTCGGAACCATTCCACTAGCACTCGCGAATAAGAAAAAA GTCTGTATTGCCACGGCCACAGTCGCGCTACAAGAGCAGCTGTTGCATAAAGACCTGCCATTTTTCCTACAGCAATCTGG ACTCGACTTTAGCTTTGGTTTAGTTAAAGGCCGCCAACGTTATGTCTGCTTATCTAAACTCGAGATGCTCGTTGGCCCAG ATAACAGCACCCAAATGGCGATGTGGCAGAGCAAACCCGATCAAAGCCAAGTGGATATGCTCGAAGCTCTGCTTAAGGAT TATCACTCAGGTGTATGGAATGGCGAGCGAGATACGCTAACCAAGCCGATCCCCGATCATCTGTGGCAACAGATCGCCTG CGATAAGCACAGTTGCCATCGCCAACTTGCCAGCCATCGTAACTGCCCTTTTCACAAGGCACGAGAAGATCTCGACACTT GGGATGTACTGATTGCCAACCATAGTTTGCTTTTTGCCGACCTAGAGCTGGGCGGCGGGGTTATTTTACCCGATCCCGAA GACCTATATTACGTCATTGATGAAGCACACCACTTACCAATAGTAGCAAGAGATTTTAGTAGCGCTCAATCTACCGTGCG TGGTGCAAACGATTGGCTTGAAAAGCTCAGCAAGACCACCAGCAAGTTACAAAACCAAATCAAGAGCAACTACATTATCG CCCCGGCGCAAGCCATGCTGGATCATATTGGCGATATCACAGGCCTTTTAAACCAAGTGGCTCAGTTTTGTGACTCCCAA TCAGCCAAATTTGATAATCCAGAAAACCGCTTTAGATTCGAGCATGGCAAGTTACCGTCGGCATTATTAGTACAAGCCGA AAACCTTGCTACCGCCTCCAATGTGGCGCTAAAGCAGTTTAATAAGATGCTAACGTTGCTCAACGAAGCGATAAAAGATG GTGACATTCCAAAGCACCAATCGGAAGCCTTGCTATCTGAAACAGGTTTTATGCTGCAACGGTTAGAAAATCTTCAGAAA CTTTGGAAGATGATGGCCAAAGAGGATAGCCCCAAGGGTGCACCTATGGCCCGCTGGATTGAACAGCTTACCGGTAAACA GGCCGACTATCTCTTTAACGCATCCCCCATCGAGGTCGGCTTTATGCTGGAAAACCTGTTATGGGACAAAGCCGCTGGCG TGGTGCTATGTAGTGCGACCTTAAGAGCGCTAAATAATTTTAACCACTTCACTCATCAAGTCGGCTTATCGATCAATGAC GGTAGTCGTTACTTAGCGTTAGACTCGCCGTTCGATTTTGAGCAGAATGCGACACTATTCTTACCAAAGATGGACAGTGA GCCAACGGATGATAAATATACCGATGAGCTGGCTAAACATATTATCGCTCTGGTTGAAGATGAGATGGCAAGCTTAGTGT TATTCGCCTCGTACTGGCAGATGGAAAAAGTGGCCGATCTGGTCGAAAGTAAAATTAAGACAGGTCTACTTATTCAAGGC ACGGCACCAAGACAAGAGATCTTAAAGCAGCATAAAGCCCGCTGTGATGAGGGTAAGCCGAGTATTATTTTTGGTACTGG CAGCTTCTCAGAAGGGCTCGACTTGCCAGGGGATTATCTGACTAACTTGATCATCACTAAGCTACCATTTGCGGTTCCAA CCTCACCGGTTGAACAGGCGCACTCGGAATACATCAAAATAAAAGGCGGAAACCCGTTTTTACAGCTTACTATTCCCGAT GCTTCACGCAAACTGGTGCAAAGCTGTGGTAGATTATTACGTAAAGAACAAGATTACGGCCGGATTTCCATTTTAGATAG ACGTTTGGTGACTAAACGCTACGGCAAGTCTCTGCTAGATGCCCTACCACCTTTTCGCCGTGTGATTGAATAG
Upstream 100 bases:
>100_bases ACTTTATACTCAATTAAATACACTAATAATCACTAAACGCTTCTTAGGCTAAGTAATCACTGTTATTATGTACAGCACTA TTTATTAGCTTAGTGCATTC
Downstream 100 bases:
>100_bases GACAAGTTTTGGATTTACTTCTCGACCCTAGTAGTTGGGCCATACTCGCATTAGTGGGATTTATTGCTGGGTTTATCGAT GCCGTATCAGGCGGCGGTGG
Product: ATP-dependent DNA helicase DinG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 690; Mature: 690
Protein sequence:
>690_residues MLSADVKTQIRTIYKGISTSLPNFRPRREQNYIVAEISKTLAGEYDKNRRIIVVEAGTGIGKSLAYILGTIPLALANKKK VCIATATVALQEQLLHKDLPFFLQQSGLDFSFGLVKGRQRYVCLSKLEMLVGPDNSTQMAMWQSKPDQSQVDMLEALLKD YHSGVWNGERDTLTKPIPDHLWQQIACDKHSCHRQLASHRNCPFHKAREDLDTWDVLIANHSLLFADLELGGGVILPDPE DLYYVIDEAHHLPIVARDFSSAQSTVRGANDWLEKLSKTTSKLQNQIKSNYIIAPAQAMLDHIGDITGLLNQVAQFCDSQ SAKFDNPENRFRFEHGKLPSALLVQAENLATASNVALKQFNKMLTLLNEAIKDGDIPKHQSEALLSETGFMLQRLENLQK LWKMMAKEDSPKGAPMARWIEQLTGKQADYLFNASPIEVGFMLENLLWDKAAGVVLCSATLRALNNFNHFTHQVGLSIND GSRYLALDSPFDFEQNATLFLPKMDSEPTDDKYTDELAKHIIALVEDEMASLVLFASYWQMEKVADLVESKIKTGLLIQG TAPRQEILKQHKARCDEGKPSIIFGTGSFSEGLDLPGDYLTNLIITKLPFAVPTSPVEQAHSEYIKIKGGNPFLQLTIPD ASRKLVQSCGRLLRKEQDYGRISILDRRLVTKRYGKSLLDALPPFRRVIE
Sequences:
>Translated_690_residues MLSADVKTQIRTIYKGISTSLPNFRPRREQNYIVAEISKTLAGEYDKNRRIIVVEAGTGIGKSLAYILGTIPLALANKKK VCIATATVALQEQLLHKDLPFFLQQSGLDFSFGLVKGRQRYVCLSKLEMLVGPDNSTQMAMWQSKPDQSQVDMLEALLKD YHSGVWNGERDTLTKPIPDHLWQQIACDKHSCHRQLASHRNCPFHKAREDLDTWDVLIANHSLLFADLELGGGVILPDPE DLYYVIDEAHHLPIVARDFSSAQSTVRGANDWLEKLSKTTSKLQNQIKSNYIIAPAQAMLDHIGDITGLLNQVAQFCDSQ SAKFDNPENRFRFEHGKLPSALLVQAENLATASNVALKQFNKMLTLLNEAIKDGDIPKHQSEALLSETGFMLQRLENLQK LWKMMAKEDSPKGAPMARWIEQLTGKQADYLFNASPIEVGFMLENLLWDKAAGVVLCSATLRALNNFNHFTHQVGLSIND GSRYLALDSPFDFEQNATLFLPKMDSEPTDDKYTDELAKHIIALVEDEMASLVLFASYWQMEKVADLVESKIKTGLLIQG TAPRQEILKQHKARCDEGKPSIIFGTGSFSEGLDLPGDYLTNLIITKLPFAVPTSPVEQAHSEYIKIKGGNPFLQLTIPD ASRKLVQSCGRLLRKEQDYGRISILDRRLVTKRYGKSLLDALPPFRRVIE >Mature_690_residues MLSADVKTQIRTIYKGISTSLPNFRPRREQNYIVAEISKTLAGEYDKNRRIIVVEAGTGIGKSLAYILGTIPLALANKKK VCIATATVALQEQLLHKDLPFFLQQSGLDFSFGLVKGRQRYVCLSKLEMLVGPDNSTQMAMWQSKPDQSQVDMLEALLKD YHSGVWNGERDTLTKPIPDHLWQQIACDKHSCHRQLASHRNCPFHKAREDLDTWDVLIANHSLLFADLELGGGVILPDPE DLYYVIDEAHHLPIVARDFSSAQSTVRGANDWLEKLSKTTSKLQNQIKSNYIIAPAQAMLDHIGDITGLLNQVAQFCDSQ SAKFDNPENRFRFEHGKLPSALLVQAENLATASNVALKQFNKMLTLLNEAIKDGDIPKHQSEALLSETGFMLQRLENLQK LWKMMAKEDSPKGAPMARWIEQLTGKQADYLFNASPIEVGFMLENLLWDKAAGVVLCSATLRALNNFNHFTHQVGLSIND GSRYLALDSPFDFEQNATLFLPKMDSEPTDDKYTDELAKHIIALVEDEMASLVLFASYWQMEKVADLVESKIKTGLLIQG TAPRQEILKQHKARCDEGKPSIIFGTGSFSEGLDLPGDYLTNLIITKLPFAVPTSPVEQAHSEYIKIKGGNPFLQLTIPD ASRKLVQSCGRLLRKEQDYGRISILDRRLVTKRYGKSLLDALPPFRRVIE
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787018, Length=701, Percent_Identity=34.0941512125535, Blast_Score=355, Evalue=5e-99, Organism=Escherichia coli, GI1788110, Length=255, Percent_Identity=30.5882352941176, Blast_Score=129, Evalue=5e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 77418; Mature: 77418
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSADVKTQIRTIYKGISTSLPNFRPRREQNYIVAEISKTLAGEYDKNRRIIVVEAGTGI CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCC GKSLAYILGTIPLALANKKKVCIATATVALQEQLLHKDLPFFLQQSGLDFSFGLVKGRQR HHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHCCCCEEEHHHCCCCH YVCLSKLEMLVGPDNSTQMAMWQSKPDQSQVDMLEALLKDYHSGVWNGERDTLTKPIPDH HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH LWQQIACDKHSCHRQLASHRNCPFHKAREDLDTWDVLIANHSLLFADLELGGGVILPDPE HHHHHHCCHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHCCCCEEEEEEECCCCEECCCCC DLYYVIDEAHHLPIVARDFSSAQSTVRGANDWLEKLSKTTSKLQNQIKSNYIIAPAQAML CCEEEEECCCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHH DHIGDITGLLNQVAQFCDSQSAKFDNPENRFRFEHGKLPSALLVQAENLATASNVALKQF HHHHHHHHHHHHHHHHHCCCCCCCCCCHHCEEECCCCCCHHHHEEHHHHHHHHHHHHHHH NKMLTLLNEAIKDGDIPKHQSEALLSETGFMLQRLENLQKLWKMMAKEDSPKGAPMARWI HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH EQLTGKQADYLFNASPIEVGFMLENLLWDKAAGVVLCSATLRALNNFNHFTHQVGLSIND HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCEEECC GSRYLALDSPFDFEQNATLFLPKMDSEPTDDKYTDELAKHIIALVEDEMASLVLFASYWQ CCEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MEKVADLVESKIKTGLLIQGTAPRQEILKQHKARCDEGKPSIIFGTGSFSEGLDLPGDYL HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHH TNLIITKLPFAVPTSPVEQAHSEYIKIKGGNPFLQLTIPDASRKLVQSCGRLLRKEQDYG HHHHHHHCCCCCCCCHHHHHCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCCC RISILDRRLVTKRYGKSLLDALPPFRRVIE HHHHHHHHHHHHHHHHHHHHHCCHHHHHCC >Mature Secondary Structure MLSADVKTQIRTIYKGISTSLPNFRPRREQNYIVAEISKTLAGEYDKNRRIIVVEAGTGI CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCC GKSLAYILGTIPLALANKKKVCIATATVALQEQLLHKDLPFFLQQSGLDFSFGLVKGRQR HHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHCCCCEEEHHHCCCCH YVCLSKLEMLVGPDNSTQMAMWQSKPDQSQVDMLEALLKDYHSGVWNGERDTLTKPIPDH HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH LWQQIACDKHSCHRQLASHRNCPFHKAREDLDTWDVLIANHSLLFADLELGGGVILPDPE HHHHHHCCHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHCCCCEEEEEEECCCCEECCCCC DLYYVIDEAHHLPIVARDFSSAQSTVRGANDWLEKLSKTTSKLQNQIKSNYIIAPAQAML CCEEEEECCCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHH DHIGDITGLLNQVAQFCDSQSAKFDNPENRFRFEHGKLPSALLVQAENLATASNVALKQF HHHHHHHHHHHHHHHHHCCCCCCCCCCHHCEEECCCCCCHHHHEEHHHHHHHHHHHHHHH NKMLTLLNEAIKDGDIPKHQSEALLSETGFMLQRLENLQKLWKMMAKEDSPKGAPMARWI HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH EQLTGKQADYLFNASPIEVGFMLENLLWDKAAGVVLCSATLRALNNFNHFTHQVGLSIND HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCEEECC GSRYLALDSPFDFEQNATLFLPKMDSEPTDDKYTDELAKHIIALVEDEMASLVLFASYWQ CCEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MEKVADLVESKIKTGLLIQGTAPRQEILKQHKARCDEGKPSIIFGTGSFSEGLDLPGDYL HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHH TNLIITKLPFAVPTSPVEQAHSEYIKIKGGNPFLQLTIPDASRKLVQSCGRLLRKEQDYG HHHHHHHCCCCCCCCHHHHHCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCCC RISILDRRLVTKRYGKSLLDALPPFRRVIE HHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396546; 8385320 [H]