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The map label for this gene is yebA [H]

Identifier: 157962453

GI number: 157962453

Start: 3202856

End: 3204112

Strand: Reverse

Name: yebA [H]

Synonym: Spea_2632

Alternate gene names: 157962453

Gene position: 3204112-3202856 (Counterclockwise)

Preceding gene: 157962454

Following gene: 157962452

Centisome position: 61.92

GC content: 45.66

Gene sequence:

>1257_bases
GTGTCTAAAAATCGCTTCGCGGGGATCCCTTCTTTCCATCGCAAAGTTCTTTTAGGTTCAGTATTGATCATTGGCGCGGC
CGTATTGATGCCAAGCCGTCATGAACTATTACCGCAGCGGATCCCAGTTCAACTTGATATCGATTCTATTCTTTCTCAAA
CCGTGTCCGTTCCCAGTACAGAATTGCTAGAGCCAAAGCCCGCATTTCAAAAAGAGATCGTCAAAGGCGATACTTTAAGT
GGCTTATTCGAGCAAGGCGGCGTCGATCAGCAGACCATGTACCGCGTACTCGAAGCTGACTTAAATGTGTTGGCATTAGA
TACACTAAGACCGGGCAACAAGATCCAGTTCTGGCTTAATGATGCAGGTGAACTGCAAAAGCTAACGCTCTACTTTAACG
CCGCAAGGCAGGTGATTTTTACTCGCTTCGATGATGGTTCATTCAATGTTGATGAAATTAATATTGACGGTATTTGGCGA
GACCGTGCTATCTCTGGTCAAATTCACGGCTCTTTCTATGTTTCGGCAAAGAAAATGGGCCTTAATGCCGCAGAGATCCA
GCGTGTAGAATCATTATTAAAAGAGAAGCTTAATTTCGCCCGCGATCTTCGCGCTGGCGACAAGTTTTCGGTTTTGATGA
ACGATCAGTTTATCGATGGTGAAGCGACGGGAAACAGTCATGTACTCGGAGTCACTATCGACAGAGGTTCCAGTAGTATC
AATGCCTATCAACATAGCGATGGTAATTTCTATGACGAAAAAGGCCAGAGCTTAGCGCGCGCATTTCAGCGAATTCCATT
GATGAAGAACTACCGTATTAGCTCTCGATTCAACCCGAATCGTCATCACCCTGTGACAGGCAGAAATTCACCTCATAACG
GCACTGACTTTGCCATTCCTATCGGCACTAAAATTGTGGCGCCAGGTGATGGTATCGTGTCTTTGGTTACCAATCATCGT
TTTGCGGGTAAGTATGTGGTGATTGAGCACGGTAACAAGTACCGTACTCGTTACTTGCATCTATCTAAGTTCCTTGTCCA
TAAAGGCCAGCGAGTCTCGCGCGGCCAAGTTATTGGACTGTCGGGTAATACAGGTCGTGTTACAGGCCCACACCTGCATT
ATGAGTTCCATATCAATGGTCGCCCAGTAGATTCGATGAAAGCCAAAATACCTATGGCGAGTAAACTTTCTTCAAAAGAG
ATGGCGGAGTTTAGCCAGATTGTGAAAGTGAGAAAGATGATGATGGGCATTGCTTAA

Upstream 100 bases:

>100_bases
CATCAAACCTCGTTTTACAGGGGGTTTATCGTCAAATAGATAATCATAATAATGAAAGTCGAGGCATAGGTTGCACCCAA
GTAAATTTTCCTTTTCAAAT

Downstream 100 bases:

>100_bases
TGCTCAATTACTGGACCTGTAAAGTCCAGTAAAGCGAGTCCTGCCCAGAAATAGATAAAAGCCATCAAATGATGGCTTTT
TGTTTGTGAGTAAGAGTAAA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MSKNRFAGIPSFHRKVLLGSVLIIGAAVLMPSRHELLPQRIPVQLDIDSILSQTVSVPSTELLEPKPAFQKEIVKGDTLS
GLFEQGGVDQQTMYRVLEADLNVLALDTLRPGNKIQFWLNDAGELQKLTLYFNAARQVIFTRFDDGSFNVDEINIDGIWR
DRAISGQIHGSFYVSAKKMGLNAAEIQRVESLLKEKLNFARDLRAGDKFSVLMNDQFIDGEATGNSHVLGVTIDRGSSSI
NAYQHSDGNFYDEKGQSLARAFQRIPLMKNYRISSRFNPNRHHPVTGRNSPHNGTDFAIPIGTKIVAPGDGIVSLVTNHR
FAGKYVVIEHGNKYRTRYLHLSKFLVHKGQRVSRGQVIGLSGNTGRVTGPHLHYEFHINGRPVDSMKAKIPMASKLSSKE
MAEFSQIVKVRKMMMGIA

Sequences:

>Translated_418_residues
MSKNRFAGIPSFHRKVLLGSVLIIGAAVLMPSRHELLPQRIPVQLDIDSILSQTVSVPSTELLEPKPAFQKEIVKGDTLS
GLFEQGGVDQQTMYRVLEADLNVLALDTLRPGNKIQFWLNDAGELQKLTLYFNAARQVIFTRFDDGSFNVDEINIDGIWR
DRAISGQIHGSFYVSAKKMGLNAAEIQRVESLLKEKLNFARDLRAGDKFSVLMNDQFIDGEATGNSHVLGVTIDRGSSSI
NAYQHSDGNFYDEKGQSLARAFQRIPLMKNYRISSRFNPNRHHPVTGRNSPHNGTDFAIPIGTKIVAPGDGIVSLVTNHR
FAGKYVVIEHGNKYRTRYLHLSKFLVHKGQRVSRGQVIGLSGNTGRVTGPHLHYEFHINGRPVDSMKAKIPMASKLSSKE
MAEFSQIVKVRKMMMGIA
>Mature_417_residues
SKNRFAGIPSFHRKVLLGSVLIIGAAVLMPSRHELLPQRIPVQLDIDSILSQTVSVPSTELLEPKPAFQKEIVKGDTLSG
LFEQGGVDQQTMYRVLEADLNVLALDTLRPGNKIQFWLNDAGELQKLTLYFNAARQVIFTRFDDGSFNVDEINIDGIWRD
RAISGQIHGSFYVSAKKMGLNAAEIQRVESLLKEKLNFARDLRAGDKFSVLMNDQFIDGEATGNSHVLGVTIDRGSSSIN
AYQHSDGNFYDEKGQSLARAFQRIPLMKNYRISSRFNPNRHHPVTGRNSPHNGTDFAIPIGTKIVAPGDGIVSLVTNHRF
AGKYVVIEHGNKYRTRYLHLSKFLVHKGQRVSRGQVIGLSGNTGRVTGPHLHYEFHINGRPVDSMKAKIPMASKLSSKEM
AEFSQIVKVRKMMMGIA

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=421, Percent_Identity=37.0546318289786, Blast_Score=254, Evalue=6e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 46594; Mature: 46463

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNRFAGIPSFHRKVLLGSVLIIGAAVLMPSRHELLPQRIPVQLDIDSILSQTVSVPST
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHCCEEEEHHHHHHHHHCCCCH
ELLEPKPAFQKEIVKGDTLSGLFEQGGVDQQTMYRVLEADLNVLALDTLRPGNKIQFWLN
HCCCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC
DAGELQKLTLYFNAARQVIFTRFDDGSFNVDEINIDGIWRDRAISGQIHGSFYVSAKKMG
CCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEEECCEEECCEECCEECEEEEEEEHHHC
LNAAEIQRVESLLKEKLNFARDLRAGDKFSVLMNDQFIDGEATGNSHVLGVTIDRGSSSI
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCEEEEEEEECCCCCC
NAYQHSDGNFYDEKGQSLARAFQRIPLMKNYRISSRFNPNRHHPVTGRNSPHNGTDFAIP
CEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEE
IGTKIVAPGDGIVSLVTNHRFAGKYVVIEHGNKYRTRYLHLSKFLVHKGQRVSRGQVIGL
CCCEEEECCCCEEEEEECCCCCCEEEEEECCCCEEHHHHHHHHHHHHCCCCCCCCEEEEE
SGNTGRVTGPHLHYEFHINGRPVDSMKAKIPMASKLSSKEMAEFSQIVKVRKMMMGIA
CCCCCCCCCCEEEEEEEECCCCCHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKNRFAGIPSFHRKVLLGSVLIIGAAVLMPSRHELLPQRIPVQLDIDSILSQTVSVPST
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHCCEEEEHHHHHHHHHCCCCH
ELLEPKPAFQKEIVKGDTLSGLFEQGGVDQQTMYRVLEADLNVLALDTLRPGNKIQFWLN
HCCCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC
DAGELQKLTLYFNAARQVIFTRFDDGSFNVDEINIDGIWRDRAISGQIHGSFYVSAKKMG
CCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEEECCEEECCEECCEECEEEEEEEHHHC
LNAAEIQRVESLLKEKLNFARDLRAGDKFSVLMNDQFIDGEATGNSHVLGVTIDRGSSSI
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCEEEEEEEECCCCCC
NAYQHSDGNFYDEKGQSLARAFQRIPLMKNYRISSRFNPNRHHPVTGRNSPHNGTDFAIP
CEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEE
IGTKIVAPGDGIVSLVTNHRFAGKYVVIEHGNKYRTRYLHLSKFLVHKGQRVSRGQVIGL
CCCEEEECCCCEEEEEECCCCCCEEEEEECCCCEEHHHHHHHHHHHHCCCCCCCCEEEEE
SGNTGRVTGPHLHYEFHINGRPVDSMKAKIPMASKLSSKEMAEFSQIVKVRKMMMGIA
CCCCCCCCCCEEEEEEEECCCCCHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]