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The map label for this gene is rssA [H]

Identifier: 157962444

GI number: 157962444

Start: 3193062

End: 3194048

Strand: Reverse

Name: rssA [H]

Synonym: Spea_2623

Alternate gene names: 157962444

Gene position: 3194048-3193062 (Counterclockwise)

Preceding gene: 157962449

Following gene: 157962442

Centisome position: 61.73

GC content: 49.54

Gene sequence:

>987_bases
GTGTCTACAAAGAAACATTCGGTACGAATTGGCCTAGCGTTAGGTAGCGGAGCTGCAAAAGGTTGGGCGCATATTGGTGT
ATTAAACGGCCTTGCCAAAATGGGGATCTATCCCGATAAAATTGCAGGCTGCTCTATTGGTGCATTAGTTGGCGCGGCTT
ACGCTAATGATCATCTAGAAGAACTTGAGAATTGGGTTCGTAGTTTTAGCAGCTGGGATGTACTTGGGCTGATGGATCTA
AGCTGGGGGCGTGGCGGATTAATTGGCGGCGAGCGAGTGTTCGACGTCCTGCAAAAGCGCATTGGCGATATGCAGATAGA
AGATTTGAAAAAGCCATTCGCAGCCGTTGCTACTGACCTTTATTCTGGTCAGGAAATTTGGTTCAGAGAAGGGGATTTAC
GTCATGCTGTGCGCGCGTCTTGCTCCATGCCTGGCATTTTACCCCCGGTTAAAGTGGGAGAGCGTTGGTTGGTCGACGGT
GCGGTAGTTAACCCTGTTCCGGTTTCAGTTAGCCGTTCTATGGGAGTCGATTTAGTCATCGCGGTTGATCTACATGGGCT
GCGTCGTGGTCGCATGCAAGTACTGCCAGTCAGTATGAAGAGCCATAAGCCAACTAAGCAAGAAGTCCAAGAAGCGGAGC
AGCATCAAGATAAAGGCTTTACCGATTTGTTAGCTAGGGGCCGAGATTATATTACAGGCTTAACGGATAAATTCTCTTTA
GGCCATAAAACGGGCACGGCGCAAAATCCAAATCCTGGCATGCTTGCAGTGATGTCACAGTCGATGGATATTCTAGAACA
GCGCCATAAGAGAGCGCGTTTAATGGGCGATCCACCGGATATCTGCATTGTGCCTGATCTGGGCGATATCGGAACCATGG
AGTTTCATCGTGCAGAAGAAGCGATTCAAGCGGGTGAAGCCGCGGTTGAACAAGTCGCGCATCTTATTGAGGCGGCTCTG
GCACAGCATTCTGCTGAGAGAGCTTAA

Upstream 100 bases:

>100_bases
TTACTAATACGAATGGTTTTATTTAACAATTGATATAAGGCTCTTTGGCTGTAAATCATAAAGAGTCTATTTTAAAGCCA
ACCAATGGAGTCATTTTAGC

Downstream 100 bases:

>100_bases
GCTCTAGATTCTTAGTAAGTGTTCAGTAAGTAATAGCCAAGTCTTAAGTAAGCTCTAGCAAGTCGAAAATGCGCAAAGGC
CTATGTGGCAAGGGAAAGTT

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MSTKKHSVRIGLALGSGAAKGWAHIGVLNGLAKMGIYPDKIAGCSIGALVGAAYANDHLEELENWVRSFSSWDVLGLMDL
SWGRGGLIGGERVFDVLQKRIGDMQIEDLKKPFAAVATDLYSGQEIWFREGDLRHAVRASCSMPGILPPVKVGERWLVDG
AVVNPVPVSVSRSMGVDLVIAVDLHGLRRGRMQVLPVSMKSHKPTKQEVQEAEQHQDKGFTDLLARGRDYITGLTDKFSL
GHKTGTAQNPNPGMLAVMSQSMDILEQRHKRARLMGDPPDICIVPDLGDIGTMEFHRAEEAIQAGEAAVEQVAHLIEAAL
AQHSAERA

Sequences:

>Translated_328_residues
MSTKKHSVRIGLALGSGAAKGWAHIGVLNGLAKMGIYPDKIAGCSIGALVGAAYANDHLEELENWVRSFSSWDVLGLMDL
SWGRGGLIGGERVFDVLQKRIGDMQIEDLKKPFAAVATDLYSGQEIWFREGDLRHAVRASCSMPGILPPVKVGERWLVDG
AVVNPVPVSVSRSMGVDLVIAVDLHGLRRGRMQVLPVSMKSHKPTKQEVQEAEQHQDKGFTDLLARGRDYITGLTDKFSL
GHKTGTAQNPNPGMLAVMSQSMDILEQRHKRARLMGDPPDICIVPDLGDIGTMEFHRAEEAIQAGEAAVEQVAHLIEAAL
AQHSAERA
>Mature_327_residues
STKKHSVRIGLALGSGAAKGWAHIGVLNGLAKMGIYPDKIAGCSIGALVGAAYANDHLEELENWVRSFSSWDVLGLMDLS
WGRGGLIGGERVFDVLQKRIGDMQIEDLKKPFAAVATDLYSGQEIWFREGDLRHAVRASCSMPGILPPVKVGERWLVDGA
VVNPVPVSVSRSMGVDLVIAVDLHGLRRGRMQVLPVSMKSHKPTKQEVQEAEQHQDKGFTDLLARGRDYITGLTDKFSLG
HKTGTAQNPNPGMLAVMSQSMDILEQRHKRARLMGDPPDICIVPDLGDIGTMEFHRAEEAIQAGEAAVEQVAHLIEAALA
QHSAERA

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656037, Length=183, Percent_Identity=34.9726775956284, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI260656041, Length=183, Percent_Identity=34.9726775956284, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI116256487, Length=183, Percent_Identity=34.9726775956284, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI260656043, Length=183, Percent_Identity=34.9726775956284, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI260656039, Length=183, Percent_Identity=34.9726775956284, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI148727290, Length=183, Percent_Identity=36.0655737704918, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI148727335, Length=183, Percent_Identity=36.0655737704918, Blast_Score=100, Evalue=2e-21,
Organism=Escherichia coli, GI226510936, Length=308, Percent_Identity=49.025974025974, Blast_Score=284, Evalue=6e-78,
Organism=Caenorhabditis elegans, GI193204778, Length=182, Percent_Identity=33.5164835164835, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71997289, Length=166, Percent_Identity=33.1325301204819, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71997299, Length=166, Percent_Identity=33.1325301204819, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323581, Length=181, Percent_Identity=33.7016574585635, Blast_Score=95, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28571388, Length=183, Percent_Identity=33.879781420765, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281376913, Length=182, Percent_Identity=32.967032967033, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 35577; Mature: 35446

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKKHSVRIGLALGSGAAKGWAHIGVLNGLAKMGIYPDKIAGCSIGALVGAAYANDHLE
CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHH
ELENWVRSFSSWDVLGLMDLSWGRGGLIGGERVFDVLQKRIGDMQIEDLKKPFAAVATDL
HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YSGQEIWFREGDLRHAVRASCSMPGILPPVKVGERWLVDGAVVNPVPVSVSRSMGVDLVI
CCCCEEEEECCCHHHHHHHHCCCCCCCCCHHCCCEEEECCCEECCCCCCCCCCCCCEEEE
AVDLHGLRRGRMQVLPVSMKSHKPTKQEVQEAEQHQDKGFTDLLARGRDYITGLTDKFSL
EEECHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHCCCHHHCC
GHKTGTAQNPNPGMLAVMSQSMDILEQRHKRARLMGDPPDICIVPDLGDIGTMEFHRAEE
CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHH
AIQAGEAAVEQVAHLIEAALAQHSAERA
HHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STKKHSVRIGLALGSGAAKGWAHIGVLNGLAKMGIYPDKIAGCSIGALVGAAYANDHLE
CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHH
ELENWVRSFSSWDVLGLMDLSWGRGGLIGGERVFDVLQKRIGDMQIEDLKKPFAAVATDL
HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YSGQEIWFREGDLRHAVRASCSMPGILPPVKVGERWLVDGAVVNPVPVSVSRSMGVDLVI
CCCCEEEEECCCHHHHHHHHCCCCCCCCCHHCCCEEEECCCEECCCCCCCCCCCCCEEEE
AVDLHGLRRGRMQVLPVSMKSHKPTKQEVQEAEQHQDKGFTDLLARGRDYITGLTDKFSL
EEECHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHCCCHHHCC
GHKTGTAQNPNPGMLAVMSQSMDILEQRHKRARLMGDPPDICIVPDLGDIGTMEFHRAEE
CCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHH
AIQAGEAAVEQVAHLIEAALAQHSAERA
HHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]