| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is icd2 [H]
Identifier: 157962356
GI number: 157962356
Start: 3085561
End: 3087783
Strand: Reverse
Name: icd2 [H]
Synonym: Spea_2535
Alternate gene names: 157962356
Gene position: 3087783-3085561 (Counterclockwise)
Preceding gene: 157962363
Following gene: 157962354
Centisome position: 59.67
GC content: 45.39
Gene sequence:
>2223_bases ATGAACGATAAAACATCAACGATCATCTATACCGAAACTGACGAAGCGCCGGCATTAGCGACACTTTCTTTGTTACCTAT TATCCAAAAGTTTACTCAAACCGCAGGCGTTGACGTTGAAACTCGTGACATCTCTTTATCTGGCCGTGTCATTGCTAACT TCCCTGAAAACTTAACTGCAGAGCAACGCATTAACGATGCACTTGCAGAACTGGGTGAGCTTGCTAAGAAGCCTGAAGCT AACATTATCAAGCTGCCTAACATCAGTGCATCAATCCCGCAGCTTAAAGCCTGTATTCAAGAGCTGCAGAATAAAGGTTA CGACATTCCAAACTATCCTGATGAGCCAGCGAACGAAGCTGAGAAAGAGATCCAATCTCGTTACGATAAAATTAAAGGTA GTGCGGTAAATCCAGTACTGCGTGAAGGTAACTCAGATCGCCGTGCGCCAGGTTCGGTGAAGAAGTTTGCTCAGAAAAAT CCTCATTCAATGGGTAAGTGGACGTCTGATTCAAAGTCCCACGTAGCGCATATGAATGAAGGCGATTTTTACGCGAGTGA AAAATCAGTAACCCTTGCCGATGCCGGTAGTGTATCAATTGTCCTGAATAAGGCGGATGGTTCAGAGCAAGTTCTACGTA GTGCGATTGCTTTGCAAGCGGGTGAAGTTATTGACTCGGCTGTGATGAGCAAAAAAGCACTGGTTGAGTTTTATGAGCGT GAAACCAATCTGGCTAAAGAACAGAATGTTTTACTTTCATTGCACTTAAAAGCCACCATGATGAAAGTGTCAGACCCTAT TTTATTCGGTCACGCAGTTAAAGTTTATTACAAAGATGTTTTCGCTAAACATGGCCAGCTATTTGAAGAGCTAGGTGTTG ATGTAAACAACGGTGTGGGTGATGTCTACGCTAAGATCGCGACATTACCAAGCGATCAAAAAGCCGTAATCGAGGCTGAT TTAGCAGCGGTTTATAGCGAGCGCGCCGAGCTTGCAATGGTTGATTCAGATCGTGGCATTACCAATTTACACGTACCAAG TGACGTGATCATTGATGCATCAATGCCTGCAGCTATTCGTACATCTGGTCAGATGTGGGGCCCTGATGGTCAATTAAAAG ATATGAAGGCGATGATTCCAGATCGTTGTTATGCGGGTGTTTATCAAGAAACTATCGATTTCTGTATCAACAATGGTGCA TTTGATCCAAGTACCATGGGCAGCGTACCAAACGTGGGCCTAATGGCTCAGAAAGCTGAAGAATACGGTAGCCACGATAA GACGTTTGAAATCGCTGCTGCGGGCACGGTTAATGTCGTTGACCAAGCTGGCAAGGTGCTTATGTCGCACAATGTGGAAG CGGGAGATATCTTCAGAATGTGTCAGGTGAAAGATGCGCCTATCCGTGACTGGGTTAAACTTGCGGTAAATCGTTCACGT CTTTCAGCTACACCAGCGGTATTCTGGTTAGATTCGGCTCGTGCACATGACACTGAAATCATTAGCAAAGTAGAGCTTTA CCTAAAAGATCACGATACAAACGGTCTTGAACTTCACATAATGTCGCCAGTTGATGCAACACGTTTTACTCTGGACCGCG TGAAAGCGGGTAAAGATACTATCTCGGTAACCGGTAACGTTTTACGTGACTATCTAACGGATCTTTTCCCAATTCTTGAA CTTGGCACCAGTGCTAAAATGTTGTCGATTGTACCGCTAATGAATGGCGGTGGCTTGTTTGAAACAGGCGCGGGTGGTAG TGCACCTAAGCATGTTCAGCAAGTAGAGAAAGAGGGACATTTACGTTGGGATTCCCTAGGTGAATTCCTTGCTCTAGGCG CATCTTTAGAGCATTTAAGCCAGACCACAGGTAACGCCAAGGCTCAGGTACTTGCCGATACGCTCGATATTGCTATCGGC CAGTTCCTCGATAGCAATAAGTCGCCTTCGCGTCGTGTAGGTGAGCTTGATAACCGTGGCAGCCACTTCTACCTTGCAAT GTATTGGGCACAAGCGCTTGTTGCACAAACCAAAGATGCTGCGTTACAAGCAGAGTTCAGCGCATTAGCAGAGTCATTAA CTAGCAACGAAGCGAAGATTATTGGCGAGCTGAATGGCGTGCAAGGCCCTGTTGTTGATTTAGGTGGTTATTACCGTTTA GATGCAGCTAAAGCCTCTAGCGCAATGCGTCCAAGCACAACATTAAATAGTATTGTAGGCTAA
Upstream 100 bases:
>100_bases AATTCAAGGTGATAACTTAAGACCGTTACAGTTTTTTAATCGTAAAAATAGAAAATAATTATTATAAAAATCTTAAATTT AAATCAATGTAGGACACAAA
Downstream 100 bases:
>100_bases TTTAGCCGGTTATTAAGGCCTGCAAGATTGCAGGCCTTGTGGAATAACTGCAATAAAAAAGCAGAGTAGATTAACTACTC TGCTTTTTTTATCTTTTATC
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH-II; IDP-2; NADP+-specific ICDH 2; Oxalosuccinate decarboxylase 2 [H]
Number of amino acids: Translated: 740; Mature: 740
Protein sequence:
>740_residues MNDKTSTIIYTETDEAPALATLSLLPIIQKFTQTAGVDVETRDISLSGRVIANFPENLTAEQRINDALAELGELAKKPEA NIIKLPNISASIPQLKACIQELQNKGYDIPNYPDEPANEAEKEIQSRYDKIKGSAVNPVLREGNSDRRAPGSVKKFAQKN PHSMGKWTSDSKSHVAHMNEGDFYASEKSVTLADAGSVSIVLNKADGSEQVLRSAIALQAGEVIDSAVMSKKALVEFYER ETNLAKEQNVLLSLHLKATMMKVSDPILFGHAVKVYYKDVFAKHGQLFEELGVDVNNGVGDVYAKIATLPSDQKAVIEAD LAAVYSERAELAMVDSDRGITNLHVPSDVIIDASMPAAIRTSGQMWGPDGQLKDMKAMIPDRCYAGVYQETIDFCINNGA FDPSTMGSVPNVGLMAQKAEEYGSHDKTFEIAAAGTVNVVDQAGKVLMSHNVEAGDIFRMCQVKDAPIRDWVKLAVNRSR LSATPAVFWLDSARAHDTEIISKVELYLKDHDTNGLELHIMSPVDATRFTLDRVKAGKDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQVEKEGHLRWDSLGEFLALGASLEHLSQTTGNAKAQVLADTLDIAIG QFLDSNKSPSRRVGELDNRGSHFYLAMYWAQALVAQTKDAALQAEFSALAESLTSNEAKIIGELNGVQGPVVDLGGYYRL DAAKASSAMRPSTTLNSIVG
Sequences:
>Translated_740_residues MNDKTSTIIYTETDEAPALATLSLLPIIQKFTQTAGVDVETRDISLSGRVIANFPENLTAEQRINDALAELGELAKKPEA NIIKLPNISASIPQLKACIQELQNKGYDIPNYPDEPANEAEKEIQSRYDKIKGSAVNPVLREGNSDRRAPGSVKKFAQKN PHSMGKWTSDSKSHVAHMNEGDFYASEKSVTLADAGSVSIVLNKADGSEQVLRSAIALQAGEVIDSAVMSKKALVEFYER ETNLAKEQNVLLSLHLKATMMKVSDPILFGHAVKVYYKDVFAKHGQLFEELGVDVNNGVGDVYAKIATLPSDQKAVIEAD LAAVYSERAELAMVDSDRGITNLHVPSDVIIDASMPAAIRTSGQMWGPDGQLKDMKAMIPDRCYAGVYQETIDFCINNGA FDPSTMGSVPNVGLMAQKAEEYGSHDKTFEIAAAGTVNVVDQAGKVLMSHNVEAGDIFRMCQVKDAPIRDWVKLAVNRSR LSATPAVFWLDSARAHDTEIISKVELYLKDHDTNGLELHIMSPVDATRFTLDRVKAGKDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQVEKEGHLRWDSLGEFLALGASLEHLSQTTGNAKAQVLADTLDIAIG QFLDSNKSPSRRVGELDNRGSHFYLAMYWAQALVAQTKDAALQAEFSALAESLTSNEAKIIGELNGVQGPVVDLGGYYRL DAAKASSAMRPSTTLNSIVG >Mature_740_residues MNDKTSTIIYTETDEAPALATLSLLPIIQKFTQTAGVDVETRDISLSGRVIANFPENLTAEQRINDALAELGELAKKPEA NIIKLPNISASIPQLKACIQELQNKGYDIPNYPDEPANEAEKEIQSRYDKIKGSAVNPVLREGNSDRRAPGSVKKFAQKN PHSMGKWTSDSKSHVAHMNEGDFYASEKSVTLADAGSVSIVLNKADGSEQVLRSAIALQAGEVIDSAVMSKKALVEFYER ETNLAKEQNVLLSLHLKATMMKVSDPILFGHAVKVYYKDVFAKHGQLFEELGVDVNNGVGDVYAKIATLPSDQKAVIEAD LAAVYSERAELAMVDSDRGITNLHVPSDVIIDASMPAAIRTSGQMWGPDGQLKDMKAMIPDRCYAGVYQETIDFCINNGA FDPSTMGSVPNVGLMAQKAEEYGSHDKTFEIAAAGTVNVVDQAGKVLMSHNVEAGDIFRMCQVKDAPIRDWVKLAVNRSR LSATPAVFWLDSARAHDTEIISKVELYLKDHDTNGLELHIMSPVDATRFTLDRVKAGKDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQVEKEGHLRWDSLGEFLALGASLEHLSQTTGNAKAQVLADTLDIAIG QFLDSNKSPSRRVGELDNRGSHFYLAMYWAQALVAQTKDAALQAEFSALAESLTSNEAKIIGELNGVQGPVVDLGGYYRL DAAKASSAMRPSTTLNSIVG
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80086; Mature: 80086
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDKTSTIIYTETDEAPALATLSLLPIIQKFTQTAGVDVETRDISLSGRVIANFPENLTA CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEECEEEECCCEEECCCCCCCH EQRINDALAELGELAKKPEANIIKLPNISASIPQLKACIQELQNKGYDIPNYPDEPANEA HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH EKEIQSRYDKIKGSAVNPVLREGNSDRRAPGSVKKFAQKNPHSMGKWTSDSKSHVAHMNE HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHEEECCC GDFYASEKSVTLADAGSVSIVLNKADGSEQVLRSAIALQAGEVIDSAVMSKKALVEFYER CCEEECCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ETNLAKEQNVLLSLHLKATMMKVSDPILFGHAVKVYYKDVFAKHGQLFEELGVDVNNGVG HHHHHHHCCEEEEEEHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DVYAKIATLPSDQKAVIEADLAAVYSERAELAMVDSDRGITNLHVPSDVIIDASMPAAIR HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHHH TSGQMWGPDGQLKDMKAMIPDRCYAGVYQETIDFCINNGAFDPSTMGSVPNVGLMAQKAE CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHH EYGSHDKTFEIAAAGTVNVVDQAGKVLMSHNVEAGDIFRMCQVKDAPIRDWVKLAVNRSR HHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH LSATPAVFWLDSARAHDTEIISKVELYLKDHDTNGLELHIMSPVDATRFTLDRVKAGKDT HCCCCEEEEECCCCCCHHHHHHHHHEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCE ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQVEKEGH EEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHCC LRWDSLGEFLALGASLEHLSQTTGNAKAQVLADTLDIAIGQFLDSNKSPSRRVGELDNRG CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC SHFYLAMYWAQALVAQTKDAALQAEFSALAESLTSNEAKIIGELNGVQGPVVDLGGYYRL CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEEEE DAAKASSAMRPSTTLNSIVG EHHHHCCCCCCCHHHHHHCC >Mature Secondary Structure MNDKTSTIIYTETDEAPALATLSLLPIIQKFTQTAGVDVETRDISLSGRVIANFPENLTA CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEECEEEECCCEEECCCCCCCH EQRINDALAELGELAKKPEANIIKLPNISASIPQLKACIQELQNKGYDIPNYPDEPANEA HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH EKEIQSRYDKIKGSAVNPVLREGNSDRRAPGSVKKFAQKNPHSMGKWTSDSKSHVAHMNE HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHEEECCC GDFYASEKSVTLADAGSVSIVLNKADGSEQVLRSAIALQAGEVIDSAVMSKKALVEFYER CCEEECCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ETNLAKEQNVLLSLHLKATMMKVSDPILFGHAVKVYYKDVFAKHGQLFEELGVDVNNGVG HHHHHHHCCEEEEEEHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DVYAKIATLPSDQKAVIEADLAAVYSERAELAMVDSDRGITNLHVPSDVIIDASMPAAIR HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHHH TSGQMWGPDGQLKDMKAMIPDRCYAGVYQETIDFCINNGAFDPSTMGSVPNVGLMAQKAE CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHH EYGSHDKTFEIAAAGTVNVVDQAGKVLMSHNVEAGDIFRMCQVKDAPIRDWVKLAVNRSR HHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH LSATPAVFWLDSARAHDTEIISKVELYLKDHDTNGLELHIMSPVDATRFTLDRVKAGKDT HCCCCEEEEECCCCCCHHHHHHHHHEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCE ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQVEKEGH EEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHCC LRWDSLGEFLALGASLEHLSQTTGNAKAQVLADTLDIAIGQFLDSNKSPSRRVGELDNRG CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC SHFYLAMYWAQALVAQTKDAALQAEFSALAESLTSNEAKIIGELNGVQGPVVDLGGYYRL CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEEEE DAAKASSAMRPSTTLNSIVG EHHHHCCCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226630; 1295895 [H]