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The map label for this gene is ynaI [C]

Identifier: 157961723

GI number: 157961723

Start: 2311491

End: 2312213

Strand: Direct

Name: ynaI [C]

Synonym: Spea_1900

Alternate gene names: 157961723

Gene position: 2311491-2312213 (Clockwise)

Preceding gene: 157961716

Following gene: 157961724

Centisome position: 44.67

GC content: 44.12

Gene sequence:

>723_bases
GTGATCCAAAATAGCTTACGTTTGCGTTGGATCAAGCGTGGTAATAGCCAGAGCGCATCTTTATTAAGGCCGCTTGCTAA
CTTTACCCGAGTGATGCTGGTGGCTTTAGCGGTACTCATTTGGCTAGAACATTTAGGCTTTGATGCCTCAACTATCCTCG
CGGGATTAGGCATTGGTGGTATAGCGGTCGCTTTGGCTTCAAAACAGTCGATAGAAAATTTTATTGGTACCATCACTCTC
TATTCATCGGCTCCGATTAAGGTGGGTAATATTGGTCGCTTTGGCAGTATAACTGGCACTGTGGAGGAGATAGGGCTTCG
TTGTACCCGTATTAGAACCATCGACCGTTCGGTAATCAATGTGCCAAATGCGAGGCTATCAGAGATGGATATTGAAAATA
TTTCTGAGCGAGAAAAGATCCGTTTGAAAACAGATATTCGCCTCGATTACCAGACCAGTACTGAGCAAATTCACCATATC
ATCGATGACATACGCTGCTTGCTAGAGCAGCACGATAAGGTCGAGGAAAGCCCTCTCAGAGTAACTTTTAAGGGTTTTGG
TTTATATGGCTTACAACTTAATGTGTTTGCCTATATTGGCACAACAGATTTTGCAGAGTTTCAGTTGGTATCGGAAGAGT
TACATTTTGGCATTATGAATGTGGTGAGTAAGCATGGCTCACGTATCGTTCCCGTGGTACCAGTTGCTGCAACACAAGCT
TAG

Upstream 100 bases:

>100_bases
CACACGAGATTTAGTCTTCATTTTTAATCATGAAGTAACATAATTGCACATAAATATAGATGGGGTTAGTAACTAAGTAA
AGAAGGTGTAACTAACCGAT

Downstream 100 bases:

>100_bases
CTAAAAAGCTAATTTGTGGCATAGATTAATGATTTAACGTGATAAATCACTATAATCTAGGGAATTAATAAAATATTAAA
GGAACTCACATGGCTCAAAT

Product: mechanosensitive ion channel protein MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIQNSLRLRWIKRGNSQSASLLRPLANFTRVMLVALAVLIWLEHLGFDASTILAGLGIGGIAVALASKQSIENFIGTITL
YSSAPIKVGNIGRFGSITGTVEEIGLRCTRIRTIDRSVINVPNARLSEMDIENISEREKIRLKTDIRLDYQTSTEQIHHI
IDDIRCLLEQHDKVEESPLRVTFKGFGLYGLQLNVFAYIGTTDFAEFQLVSEELHFGIMNVVSKHGSRIVPVVPVAATQA

Sequences:

>Translated_240_residues
MIQNSLRLRWIKRGNSQSASLLRPLANFTRVMLVALAVLIWLEHLGFDASTILAGLGIGGIAVALASKQSIENFIGTITL
YSSAPIKVGNIGRFGSITGTVEEIGLRCTRIRTIDRSVINVPNARLSEMDIENISEREKIRLKTDIRLDYQTSTEQIHHI
IDDIRCLLEQHDKVEESPLRVTFKGFGLYGLQLNVFAYIGTTDFAEFQLVSEELHFGIMNVVSKHGSRIVPVVPVAATQA
>Mature_240_residues
MIQNSLRLRWIKRGNSQSASLLRPLANFTRVMLVALAVLIWLEHLGFDASTILAGLGIGGIAVALASKQSIENFIGTITL
YSSAPIKVGNIGRFGSITGTVEEIGLRCTRIRTIDRSVINVPNARLSEMDIENISEREKIRLKTDIRLDYQTSTEQIHHI
IDDIRCLLEQHDKVEESPLRVTFKGFGLYGLQLNVFAYIGTTDFAEFQLVSEELHFGIMNVVSKHGSRIVPVVPVAATQA

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1787591, Length=230, Percent_Identity=30, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789291, Length=174, Percent_Identity=25.8620689655172, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 26629; Mature: 26629

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQNSLRLRWIKRGNSQSASLLRPLANFTRVMLVALAVLIWLEHLGFDASTILAGLGIGG
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHH
IAVALASKQSIENFIGTITLYSSAPIKVGNIGRFGSITGTVEEIGLRCTRIRTIDRSVIN
HHHHHHHHHHHHHHHHEEEEECCCCEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHC
VPNARLSEMDIENISEREKIRLKTDIRLDYQTSTEQIHHIIDDIRCLLEQHDKVEESPLR
CCCCHHHHCCHHCCCCHHHEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
VTFKGFGLYGLQLNVFAYIGTTDFAEFQLVSEELHFGIMNVVSKHGSRIVPVVPVAATQA
EEEECCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
>Mature Secondary Structure
MIQNSLRLRWIKRGNSQSASLLRPLANFTRVMLVALAVLIWLEHLGFDASTILAGLGIGG
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHH
IAVALASKQSIENFIGTITLYSSAPIKVGNIGRFGSITGTVEEIGLRCTRIRTIDRSVIN
HHHHHHHHHHHHHHHHEEEEECCCCEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHC
VPNARLSEMDIENISEREKIRLKTDIRLDYQTSTEQIHHIIDDIRCLLEQHDKVEESPLR
CCCCHHHHCCHHCCCCHHHEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
VTFKGFGLYGLQLNVFAYIGTTDFAEFQLVSEELHFGIMNVVSKHGSRIVPVVPVAATQA
EEEECCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]