| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is ycaI [H]
Identifier: 157961593
GI number: 157961593
Start: 2149716
End: 2152154
Strand: Direct
Name: ycaI [H]
Synonym: Spea_1769
Alternate gene names: 157961593
Gene position: 2149716-2152154 (Clockwise)
Preceding gene: 157961591
Following gene: 157961594
Centisome position: 41.54
GC content: 45.59
Gene sequence:
>2439_bases ATGAATCGATTTATGTGCGGTTACTGCGTCACCATTGTTTCAACGATGCTTTGGCCCGCTCTGGCTAATCTTTATTTGCT ACCTTTACTAATAGTAGTGGTTATTACCGCCTGTAAGCGTGTGCCATTCATTGCCGGAGGCTTATTTGCAATCTGCTGGA TTAGCCTTTTTTATGCGTTATTAATGGGCTGGGACACAGATGAACGAGTCGATACACTGAATGTTGAGGGCGAGATAGTA TCACTTGTTCATACAAACGGCGACTGGATTAGTATGGATATTGTGCTGATTGATTCAATTTCCCCCCATTTGTTTAGTCG AAAGCTTAGATTGACTTGGAAGGAACCTCCGTCGCTAACCCCCGGCCAGCATTGGCTGTTAACCATAAAACCTAGGCCCA TCACCAGCACCTTAAATCAGGGGAGTTATAACCAGCAAAAGAACTTGTTGGCTAAACACATTATAGGAAAAGGTAGAGTC GTTAGTGGGAAGTTATTAAGCCATGAGCCAAATTATCGCACTCAGTTAATCGCTGAACTCAAGCATACACTTAAGACCCA TGCCAGTGGTGACCTGTTACTTGCGCTGGTGGCGGGAGACAGGACTATGATCTCAGCAGAGCGCTGGCAACAGCTGAGAA ACACTGGAGCTGGCCATCTCTTTGCCATATCAGGGTTACACCTTTCAGTGGTTTCACTTTGGCTATTAATTGGCGCCCGT TTTTTGTTATACCGATATAGCGCAGTAAATAGCCGCAGAAATTGGCTGCTGTGCCTGACGTTGTCGGCAGTGGGGGCCGT TGCCTACGCATATCTAGCCGGTTTTTCTGTGTCGACACAGCGGGCGATGATCATGCTGCTCGCATTTATCTGTTTTAGTG TATTGCAAAGGCACTCTTCCAGTTGGGAGCGGTTGCTGTATGCGCTTTTTGTGGTGCTACTCATGGACCCATTGAGTATG TTAAGCGCCAGCTTCTGGTTATCCTTTAGCGCCTTGGGAATTATTCTCCTTACGGTGACGAGGCATACTTTTACACCAAA AAACCTAAGTGCCAGTCTCGATAGTGGGGCAATGGCGCAAGCTAACCTGAGTGAGCATGCAACTTTATGGCTTAAGTTTC GCAACGCTTGTGTGGCATTTTGGGCTGTGCAGTGGCGGTTAACCCTTGGCTTGTGTTTGGTTCAGGCGATATTTTTTTCA GGAACATCGCTAGTGAGTCTAGCGGTTAATTTACTGCTGGTCCCATGGTTTACGCTGCTTGTTATTCCTCTGTGCTTGTT GTCGCTGTTGGTCTTTATATTTGCAACGAGCTTGGGGTTGTCAGCTGCGGGAATATTTTGGGTTGCGGCAAAGTCAATGG TGCCGGTGACAGCCATTTTGAACTACAGCAGTCAATTCGAATTTGTCTGGCTTGCACTATCCGATCAAGTTATTGCTGCC TTGATGGTCGCGTTCATTGGCCTCTACCTGACGATAAACGTAAAGGATATTCTCTGGCGGCTGGTACTATCAGTGATGTT AATGCCTCTGCTATTAATGAATCTGTTTATGTTTGCACCCATTGAAGATAAGCGCTGGCAAGTGCATCTGCTCGATGTTG GCCAAGGTCTTTCCTTGGTGATAGAGAAGGGTAATCGGGCCATAATCTATGATACGGGGGCGCGATATGGTGATAGTTTT AGCTATGCCGAGCGTGTGGTGTTGCCTTTCCTTATTAGTCAAGGCATAGAACAGCTTGATTATCTGGTTGTGAGTCATGG CGATAATGACCATGCCGGTGGAGCTGAAATTATTATTCAGCGTTACCCTAAAACTCTGCTTATTTCAGATCTTGATATGG GGGGGGAGTCAGCACTTGCATCTGAATTTGATCATAAATTTGCTCATGAAATCGCTTTAGCACAGCAATACAGTTGCAGA CCCAAGATACTCAAATGGCAAAATCTCACCCTTGAAGTGCTAGCTCCTAGTGAAGCGAGAGAGGGCAACAACGGTTCGTG TGTGATCAGAGTGAACGATGCCAGTAACTCTGTGCTATTAAGCGGAGATATCGAAAAACTCGCTGAGCGGGCACTGCTTG GTATGATTGAGGAAAAGGGTAAGGCTGATGGTGAGAATAATCTAAACTTACAGAGTCGATTGCTAATAGCGCCTCATCAT GGCAGTAAAACGTCATCGACAGAGGCTTTTATCGATGCAGTATCCCCTGAGCTAGTTTTATTCCCCGCAGGCTTTAAAAA CCGCTATCGATTTCCAAATTCTGAGGTGGTTTTACGCTACCATCAGCGGGGTATTGCCACCTTAACCAGTGGAGAACAAG GACAGATAAGTATTATATTTAATCAACAAACAATGAAAATTCGTACATATCGGTCGGATTTCGCACCATTTTGGTATAAC CAAGTGTTTAGGTTTGGTCAGATTAACAATCCGGAGTAG
Upstream 100 bases:
>100_bases GCGCAGGTGCTTATGTTCACGCAATGTTTCAGGCTTGGGCATAAATTTTTCAATTAATTTTTTTGGCATAACTTCAATTT GCTGTCTTAACTTATTCACT
Downstream 100 bases:
>100_bases AATGCTTCTTTTGCCAATATGTTAATCTCTCAATGACAACATCTCCTAAAAATGAAGTCTGGACTGTATTTAAGCGTCTG CTGGGCTATTTAAAGCCTCT
Product: DNA internalization-like competence protein ComEC/Rec2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MNRFMCGYCVTIVSTMLWPALANLYLLPLLIVVVITACKRVPFIAGGLFAICWISLFYALLMGWDTDERVDTLNVEGEIV SLVHTNGDWISMDIVLIDSISPHLFSRKLRLTWKEPPSLTPGQHWLLTIKPRPITSTLNQGSYNQQKNLLAKHIIGKGRV VSGKLLSHEPNYRTQLIAELKHTLKTHASGDLLLALVAGDRTMISAERWQQLRNTGAGHLFAISGLHLSVVSLWLLIGAR FLLYRYSAVNSRRNWLLCLTLSAVGAVAYAYLAGFSVSTQRAMIMLLAFICFSVLQRHSSSWERLLYALFVVLLMDPLSM LSASFWLSFSALGIILLTVTRHTFTPKNLSASLDSGAMAQANLSEHATLWLKFRNACVAFWAVQWRLTLGLCLVQAIFFS GTSLVSLAVNLLLVPWFTLLVIPLCLLSLLVFIFATSLGLSAAGIFWVAAKSMVPVTAILNYSSQFEFVWLALSDQVIAA LMVAFIGLYLTINVKDILWRLVLSVMLMPLLLMNLFMFAPIEDKRWQVHLLDVGQGLSLVIEKGNRAIIYDTGARYGDSF SYAERVVLPFLISQGIEQLDYLVVSHGDNDHAGGAEIIIQRYPKTLLISDLDMGGESALASEFDHKFAHEIALAQQYSCR PKILKWQNLTLEVLAPSEAREGNNGSCVIRVNDASNSVLLSGDIEKLAERALLGMIEEKGKADGENNLNLQSRLLIAPHH GSKTSSTEAFIDAVSPELVLFPAGFKNRYRFPNSEVVLRYHQRGIATLTSGEQGQISIIFNQQTMKIRTYRSDFAPFWYN QVFRFGQINNPE
Sequences:
>Translated_812_residues MNRFMCGYCVTIVSTMLWPALANLYLLPLLIVVVITACKRVPFIAGGLFAICWISLFYALLMGWDTDERVDTLNVEGEIV SLVHTNGDWISMDIVLIDSISPHLFSRKLRLTWKEPPSLTPGQHWLLTIKPRPITSTLNQGSYNQQKNLLAKHIIGKGRV VSGKLLSHEPNYRTQLIAELKHTLKTHASGDLLLALVAGDRTMISAERWQQLRNTGAGHLFAISGLHLSVVSLWLLIGAR FLLYRYSAVNSRRNWLLCLTLSAVGAVAYAYLAGFSVSTQRAMIMLLAFICFSVLQRHSSSWERLLYALFVVLLMDPLSM LSASFWLSFSALGIILLTVTRHTFTPKNLSASLDSGAMAQANLSEHATLWLKFRNACVAFWAVQWRLTLGLCLVQAIFFS GTSLVSLAVNLLLVPWFTLLVIPLCLLSLLVFIFATSLGLSAAGIFWVAAKSMVPVTAILNYSSQFEFVWLALSDQVIAA LMVAFIGLYLTINVKDILWRLVLSVMLMPLLLMNLFMFAPIEDKRWQVHLLDVGQGLSLVIEKGNRAIIYDTGARYGDSF SYAERVVLPFLISQGIEQLDYLVVSHGDNDHAGGAEIIIQRYPKTLLISDLDMGGESALASEFDHKFAHEIALAQQYSCR PKILKWQNLTLEVLAPSEAREGNNGSCVIRVNDASNSVLLSGDIEKLAERALLGMIEEKGKADGENNLNLQSRLLIAPHH GSKTSSTEAFIDAVSPELVLFPAGFKNRYRFPNSEVVLRYHQRGIATLTSGEQGQISIIFNQQTMKIRTYRSDFAPFWYN QVFRFGQINNPE >Mature_812_residues MNRFMCGYCVTIVSTMLWPALANLYLLPLLIVVVITACKRVPFIAGGLFAICWISLFYALLMGWDTDERVDTLNVEGEIV SLVHTNGDWISMDIVLIDSISPHLFSRKLRLTWKEPPSLTPGQHWLLTIKPRPITSTLNQGSYNQQKNLLAKHIIGKGRV VSGKLLSHEPNYRTQLIAELKHTLKTHASGDLLLALVAGDRTMISAERWQQLRNTGAGHLFAISGLHLSVVSLWLLIGAR FLLYRYSAVNSRRNWLLCLTLSAVGAVAYAYLAGFSVSTQRAMIMLLAFICFSVLQRHSSSWERLLYALFVVLLMDPLSM LSASFWLSFSALGIILLTVTRHTFTPKNLSASLDSGAMAQANLSEHATLWLKFRNACVAFWAVQWRLTLGLCLVQAIFFS GTSLVSLAVNLLLVPWFTLLVIPLCLLSLLVFIFATSLGLSAAGIFWVAAKSMVPVTAILNYSSQFEFVWLALSDQVIAA LMVAFIGLYLTINVKDILWRLVLSVMLMPLLLMNLFMFAPIEDKRWQVHLLDVGQGLSLVIEKGNRAIIYDTGARYGDSF SYAERVVLPFLISQGIEQLDYLVVSHGDNDHAGGAEIIIQRYPKTLLISDLDMGGESALASEFDHKFAHEIALAQQYSCR PKILKWQNLTLEVLAPSEAREGNNGSCVIRVNDASNSVLLSGDIEKLAERALLGMIEEKGKADGENNLNLQSRLLIAPHH GSKTSSTEAFIDAVSPELVLFPAGFKNRYRFPNSEVVLRYHQRGIATLTSGEQGQISIIFNQQTMKIRTYRSDFAPFWYN QVFRFGQINNPE
Specific function: Unknown
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis ComEC, N.gonorrhoeae ComA, and H.influenzae Rec2 [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=697, Percent_Identity=28.2639885222382, Blast_Score=262, Evalue=8e-71,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 90583; Mature: 90583
Theoretical pI: Translated: 8.56; Mature: 8.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRFMCGYCVTIVSTMLWPALANLYLLPLLIVVVITACKRVPFIAGGLFAICWISLFYAL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LMGWDTDERVDTLNVEGEIVSLVHTNGDWISMDIVLIDSISPHLFSRKLRLTWKEPPSLT HHCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEEEEECCCHHHHCCEEEEEECCCCCCC PGQHWLLTIKPRPITSTLNQGSYNQQKNLLAKHIIGKGRVVSGKLLSHEPNYRTQLIAEL CCCEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHCCCCEEEECHHCCCCCCHHHHHHHHH KHTLKTHASGDLLLALVAGDRTMISAERWQQLRNTGAGHLFAISGLHLSVVSLWLLIGAR HHHHHHCCCCCEEEEEEECCCCEECHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH FLLYRYSAVNSRRNWLLCLTLSAVGAVAYAYLAGFSVSTQRAMIMLLAFICFSVLQRHSS HHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC SWERLLYALFVVLLMDPLSMLSASFWLSFSALGIILLTVTRHTFTPKNLSASLDSGAMAQ HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE ANLSEHATLWLKFRNACVAFWAVQWRLTLGLCLVQAIFFSGTSLVSLAVNLLLVPWFTLL CCCCHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH VIPLCLLSLLVFIFATSLGLSAAGIFWVAAKSMVPVTAILNYSSQFEFVWLALSDQVIAA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEEECHHHHHH LMVAFIGLYLTINVKDILWRLVLSVMLMPLLLMNLFMFAPIEDKRWQVHLLDVGQGLSLV HHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEE IEKGNRAIIYDTGARYGDSFSYAERVVLPFLISQGIEQLDYLVVSHGDNDHAGGAEIIIQ EECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHH RYPKTLLISDLDMGGESALASEFDHKFAHEIALAQQYSCRPKILKWQNLTLEVLAPSEAR HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCC EGNNGSCVIRVNDASNSVLLSGDIEKLAERALLGMIEEKGKADGENNLNLQSRLLIAPHH CCCCCEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCC GSKTSSTEAFIDAVSPELVLFPAGFKNRYRFPNSEVVLRYHQRGIATLTSGEQGQISIIF CCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEE NQQTMKIRTYRSDFAPFWYNQVFRFGQINNPE CCCEEEEEEHHCCCCHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNRFMCGYCVTIVSTMLWPALANLYLLPLLIVVVITACKRVPFIAGGLFAICWISLFYAL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LMGWDTDERVDTLNVEGEIVSLVHTNGDWISMDIVLIDSISPHLFSRKLRLTWKEPPSLT HHCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEEEEECCCHHHHCCEEEEEECCCCCCC PGQHWLLTIKPRPITSTLNQGSYNQQKNLLAKHIIGKGRVVSGKLLSHEPNYRTQLIAEL CCCEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHCCCCEEEECHHCCCCCCHHHHHHHHH KHTLKTHASGDLLLALVAGDRTMISAERWQQLRNTGAGHLFAISGLHLSVVSLWLLIGAR HHHHHHCCCCCEEEEEEECCCCEECHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH FLLYRYSAVNSRRNWLLCLTLSAVGAVAYAYLAGFSVSTQRAMIMLLAFICFSVLQRHSS HHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC SWERLLYALFVVLLMDPLSMLSASFWLSFSALGIILLTVTRHTFTPKNLSASLDSGAMAQ HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE ANLSEHATLWLKFRNACVAFWAVQWRLTLGLCLVQAIFFSGTSLVSLAVNLLLVPWFTLL CCCCHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH VIPLCLLSLLVFIFATSLGLSAAGIFWVAAKSMVPVTAILNYSSQFEFVWLALSDQVIAA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEEECHHHHHH LMVAFIGLYLTINVKDILWRLVLSVMLMPLLLMNLFMFAPIEDKRWQVHLLDVGQGLSLV HHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEE IEKGNRAIIYDTGARYGDSFSYAERVVLPFLISQGIEQLDYLVVSHGDNDHAGGAEIIIQ EECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHH RYPKTLLISDLDMGGESALASEFDHKFAHEIALAQQYSCRPKILKWQNLTLEVLAPSEAR HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCC EGNNGSCVIRVNDASNSVLLSGDIEKLAERALLGMIEEKGKADGENNLNLQSRLLIAPHH CCCCCEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCC GSKTSSTEAFIDAVSPELVLFPAGFKNRYRFPNSEVVLRYHQRGIATLTSGEQGQISIIF CCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEE NQQTMKIRTYRSDFAPFWYNQVFRFGQINNPE CCCEEEEEEHHCCCCHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 8094880 [H]