Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
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Accession | NC_009901 |
Length | 5,174,581 |
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The map label for this gene is yfjN [H]
Identifier: 157961104
GI number: 157961104
Start: 1561552
End: 1562637
Strand: Direct
Name: yfjN [H]
Synonym: Spea_1276
Alternate gene names: 157961104
Gene position: 1561552-1562637 (Clockwise)
Preceding gene: 157961103
Following gene: 157961105
Centisome position: 30.18
GC content: 39.13
Gene sequence:
>1086_bases GTGACTGAAGCACGGAATTATAAAAATTTAAACTTAGTTAGAGCAAACATAGAGGATGTCGTTAACACGTTTATGGATCA GCATGGCTTTACTCTTGAGTCTATTGGAGATATGCCCGGTGCTCAGAATGGAAAAAGAGTTGTATATGGTCAGGCTGGTA GCTTGTATGCGACGGTTGATATCTTCTTCAATAACACTGGCACTTCAACCGTACAGTTTAAAACAGGTAGAAACCAGCTA TTAGGGAAGCGACTTGCTGATTGCTTGTACGAAACGATTAATCCAGTTGAATTTGAAAGTGTAAATATGGTTGTAGATGG TTTTATTGAAGAATCGATATCTCCAGTTTTACTTTGTACTGCAGATGAGACCTATATAGAACTGCAGGAACATCATAGAG AGGCTAGCAAGATAGTCTGGAAGCTTATTTCTATTGAGTTTCAAGATGAACTCACGGTAACACTCCATACAACAACTCGA CTGTTGCAAATACAGGGTCGCCCTTTATCTTGTTACAGAGCTTTTATATTTAACCTGACAGAGCTACTTGATCTTCAAGG ATTAGAGAAGGTTTTATCAAGGCAAGATGATAGTAAAGTTGAAATCATTCAGCAGGAAGTCGCTCGTAGTTATCTTCAAA CTGTTATGGGGGATTCCTATCGCCACTTGCATAAAAATGTTGAAAAATTGCTCGTTTCAGGTCTCTGTGTTAAACTCGCC GCCCCTCAACTACCAGACTACTGTATGTTGCTGTACCCGGAGCTACGCTCTATTGAAGGTGCTCTAAAGGGGAAAATGGC ACTGTTTGGATTAGTTGTAGGCCGTGATGGTTTTGGGGGGTTCTTCGAAAAAATCCCAGGAAAATACCAATTAGAAGCGT CGCATAGAGCACATTTTCCATCAGATGTGAGTGCAAATATTGTTGAAGATGCTTATACTTTCTACAATAAAGAACGTCAT GGCCTCTTCCACATGGAGCCTATTGTGGATACTAGTAGAGTGATGAGTGATATAAGTCATTTAATGACGAAATCAAAGCA CTCTTGGGAACATATTAAAAAGTTATATAGTATACAAAATGTATAA
Upstream 100 bases:
>100_bases GCGCATGTGAATTTAACTAAAGGTGATAGGTAAAACTTTTGCCAAAAGAATGTGCAATATTAAAATATTCTAAATTTAAG CATTTAAAAAGGACTGAAAA
Downstream 100 bases:
>100_bases TATCAGAAAGTTAAATATCAAAAACAACCCTCAAGCTATCGTTACAGCGATAAGCTACGAAAGTCCGTTGTCTTTGATTT CTGAGATTGAACAGGAATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 361; Mature: 360
Protein sequence:
>361_residues MTEARNYKNLNLVRANIEDVVNTFMDQHGFTLESIGDMPGAQNGKRVVYGQAGSLYATVDIFFNNTGTSTVQFKTGRNQL LGKRLADCLYETINPVEFESVNMVVDGFIEESISPVLLCTADETYIELQEHHREASKIVWKLISIEFQDELTVTLHTTTR LLQIQGRPLSCYRAFIFNLTELLDLQGLEKVLSRQDDSKVEIIQQEVARSYLQTVMGDSYRHLHKNVEKLLVSGLCVKLA APQLPDYCMLLYPELRSIEGALKGKMALFGLVVGRDGFGGFFEKIPGKYQLEASHRAHFPSDVSANIVEDAYTFYNKERH GLFHMEPIVDTSRVMSDISHLMTKSKHSWEHIKKLYSIQNV
Sequences:
>Translated_361_residues MTEARNYKNLNLVRANIEDVVNTFMDQHGFTLESIGDMPGAQNGKRVVYGQAGSLYATVDIFFNNTGTSTVQFKTGRNQL LGKRLADCLYETINPVEFESVNMVVDGFIEESISPVLLCTADETYIELQEHHREASKIVWKLISIEFQDELTVTLHTTTR LLQIQGRPLSCYRAFIFNLTELLDLQGLEKVLSRQDDSKVEIIQQEVARSYLQTVMGDSYRHLHKNVEKLLVSGLCVKLA APQLPDYCMLLYPELRSIEGALKGKMALFGLVVGRDGFGGFFEKIPGKYQLEASHRAHFPSDVSANIVEDAYTFYNKERH GLFHMEPIVDTSRVMSDISHLMTKSKHSWEHIKKLYSIQNV >Mature_360_residues TEARNYKNLNLVRANIEDVVNTFMDQHGFTLESIGDMPGAQNGKRVVYGQAGSLYATVDIFFNNTGTSTVQFKTGRNQLL GKRLADCLYETINPVEFESVNMVVDGFIEESISPVLLCTADETYIELQEHHREASKIVWKLISIEFQDELTVTLHTTTRL LQIQGRPLSCYRAFIFNLTELLDLQGLEKVLSRQDDSKVEIIQQEVARSYLQTVMGDSYRHLHKNVEKLLVSGLCVKLAA PQLPDYCMLLYPELRSIEGALKGKMALFGLVVGRDGFGGFFEKIPGKYQLEASHRAHFPSDVSANIVEDAYTFYNKERHG LFHMEPIVDTSRVMSDISHLMTKSKHSWEHIKKLYSIQNV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788983, Length=356, Percent_Identity=59.2696629213483, Blast_Score=434, Evalue=1e-123,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41023; Mature: 40891
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEARNYKNLNLVRANIEDVVNTFMDQHGFTLESIGDMPGAQNGKRVVYGQAGSLYATVD CCCCCCCCCCCEEECCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEECCCCEEEEEE IFFNNTGTSTVQFKTGRNQLLGKRLADCLYETINPVEFESVNMVVDGFIEESISPVLLCT EEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEE ADETYIELQEHHREASKIVWKLISIEFQDELTVTLHTTTRLLQIQGRPLSCYRAFIFNLT CCCHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHH ELLDLQGLEKVLSRQDDSKVEIIQQEVARSYLQTVMGDSYRHLHKNVEKLLVSGLCVKLA HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC APQLPDYCMLLYPELRSIEGALKGKMALFGLVVGRDGFGGFFEKIPGKYQLEASHRAHFP CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHCCCCEEEECCCCCCCC SDVSANIVEDAYTFYNKERHGLFHMEPIVDTSRVMSDISHLMTKSKHSWEHIKKLYSIQN CCCCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC V C >Mature Secondary Structure TEARNYKNLNLVRANIEDVVNTFMDQHGFTLESIGDMPGAQNGKRVVYGQAGSLYATVD CCCCCCCCCCEEECCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEECCCCEEEEEE IFFNNTGTSTVQFKTGRNQLLGKRLADCLYETINPVEFESVNMVVDGFIEESISPVLLCT EEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEE ADETYIELQEHHREASKIVWKLISIEFQDELTVTLHTTTRLLQIQGRPLSCYRAFIFNLT CCCHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHH ELLDLQGLEKVLSRQDDSKVEIIQQEVARSYLQTVMGDSYRHLHKNVEKLLVSGLCVKLA HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC APQLPDYCMLLYPELRSIEGALKGKMALFGLVVGRDGFGGFFEKIPGKYQLEASHRAHFP CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHCCCCEEEECCCCCCCC SDVSANIVEDAYTFYNKERHGLFHMEPIVDTSRVMSDISHLMTKSKHSWEHIKKLYSIQN CCCCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC V C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]