Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
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Accession | NC_009901 |
Length | 5,174,581 |
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The map label for this gene is oadA [H]
Identifier: 157961027
GI number: 157961027
Start: 1459138
End: 1460949
Strand: Direct
Name: oadA [H]
Synonym: Spea_1199
Alternate gene names: 157961027
Gene position: 1459138-1460949 (Clockwise)
Preceding gene: 157961026
Following gene: 157961028
Centisome position: 28.2
GC content: 47.02
Gene sequence:
>1812_bases ATGAGCAAGCCATTGGCTTTAACTGATGTTGTCTTAAGAGATGCACACCAATCTATTCTCGCTACTCGTTTGCGTACCGA AGATATGTTACCTATTGCGCCACTACTGGATAAGGTGGGCCTTTGGTCTATAGAGTCATGGGGCGGTGCCACTTTTGACT CTTGTATTCGTTATTTAGGTGAAGATCCTTGGGAGAGGATCCGTGAACTCAAGAAGGTTATGCCTAATACACCTCAACAG ATGTTATTGCGCGGACAAAACCTCCTAGGTTACCGTCACTATGCAGATGACCTAGTACATCGTTTTGTTGAGCGAGCCCA TACCAATGGTGTCGATGTATTCCGTGTCTTCGATGCGATGAACGATGTGCGCAACCTAGAAACTGCGGTTAAAGCTGTTG TCGAAGTCGGCGGCCATGCTCAAGGCACACTATCTTATACTACTAGCCCAGTGCATAACTTGACCACTTGGATCTATATG GCAAAGCGTATCGAAGATATGGGTTGCCATTCTCTGTGTATTAAAGACATGGCTGGGCTATTAAAGCCATTTGAAGCATT TGAGCTTATTAGCCAAATTAAGTCGCAAACCGATCTGGTTTTATCTCTGCACTGTCATGCCACTACAGGCCTAAGTACGG CAACCTATCAAAAAGCCATTGAAGCTGGCATCGATGTCCTCGATACGGCTATCTCTTCAATGAGTCAGACCTATGGACAC AGTGCAACTGAAACCTTGGTTGCTATGGTTGAAGGCACTGATAGAGCAACGGGTTACGATATGGCGTTGCTTGAAGAGAT CGCGGCTTACTTTAGAATCATACGTAAGAAGTATGCGGCTTTCGAAGGTGAGCTAAAGGGGATCGACTCACGTATCCTGC GTGCTCAAGTGCCTGGTGGAATGCTGACTAATATGGAAAGCCAGCTCAAAGAGCAGGGCGCCGCTGACAAGTTAGATCTT GTACTTGAGGAGATCCCTCGAGTACGAGAAGACTTAGGTTTCTTGCCTTTAGTCACGCCAACCTCACAAATCGTTGGTAC TCAGTCTGTTATCAACGTACTAACAGGTGAGCGTTATAAATCAATGACTAAAGAAACTGAAGGGGTATTAAAAGGTGAAT ACGGTGCAACACCTGCCCCTGTTAATGCCGAACTTCAGCAGCGTGTATTGGCTGGCAAAGAAGCGATTACCTGCCGCCCG GCAGACTTGCTTGAGTCTGAATTAGATAAATTGCGCATCGAGTTAAAAGAGAAAGCCGCTGCCGATGGCATAACGCTTGC TGAAGAGCTCGATGATGACGTTCTGACATACGCATTATTCCCACAGATCGGTCTTAAATTCCTTAGTAATCGTAATAACC CTGATGTGTTTGAGCCAAAGCCTGAGGTGGCGGCTAAAGCACTGGAGGAAGCTAAGAAGGCTGAGATTGCAGCGGCCAAT AAGCAAGGGCCAGAAACTTATACTGTTACTGTTCAAGGCCAAAGCTTTGTGGTTGAAGTCGCAGAAGGGGGGGATATCAG TCAGATCACCCCAAGCGAGAATGTAGTGCCGTTTACTGCACCAGTTCAAGCTGCGCCAGTTGTGGATCTATCTGCAGTTA AGCATGAGCAGAATGCGCCGCTTTCGGGCAATATCTTTAAAGTACACGTCTCGCCTGGCGATAGCGTCAAAGAGGGGGAT GTTGTGATCATTCTAGAAGCGATGAAGATGGAAACCGAAGTTCGTGCAGAGGCCGATGGGGTGATCTCAAAGGTTTGGGT TAAAGAAGGTGACGCTGTCGCAGTGGGTAGTCAATTGTTGGCATTAGCTTAG
Upstream 100 bases:
>100_bases AATCGAGTCAATCCGCAGTGAGCCCATTAATGGCGGCGGTTATTACTGCTGCAATTCATCAGCACCGTAAAAAAGCATAA TAAAAGTAGGGAGTTTTTGT
Downstream 100 bases:
>100_bases GGGTCATCATGGAAGGATTAATCGCGTTTTGGTCTGAATCTGGCATTGCTAACTTTACCTCGGGCCAATTGCTAATGATG GGCGTGGGTTGCCTGTTGTT
Product: oxaloacetate decarboxylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 603; Mature: 602
Protein sequence:
>603_residues MSKPLALTDVVLRDAHQSILATRLRTEDMLPIAPLLDKVGLWSIESWGGATFDSCIRYLGEDPWERIRELKKVMPNTPQQ MLLRGQNLLGYRHYADDLVHRFVERAHTNGVDVFRVFDAMNDVRNLETAVKAVVEVGGHAQGTLSYTTSPVHNLTTWIYM AKRIEDMGCHSLCIKDMAGLLKPFEAFELISQIKSQTDLVLSLHCHATTGLSTATYQKAIEAGIDVLDTAISSMSQTYGH SATETLVAMVEGTDRATGYDMALLEEIAAYFRIIRKKYAAFEGELKGIDSRILRAQVPGGMLTNMESQLKEQGAADKLDL VLEEIPRVREDLGFLPLVTPTSQIVGTQSVINVLTGERYKSMTKETEGVLKGEYGATPAPVNAELQQRVLAGKEAITCRP ADLLESELDKLRIELKEKAAADGITLAEELDDDVLTYALFPQIGLKFLSNRNNPDVFEPKPEVAAKALEEAKKAEIAAAN KQGPETYTVTVQGQSFVVEVAEGGDISQITPSENVVPFTAPVQAAPVVDLSAVKHEQNAPLSGNIFKVHVSPGDSVKEGD VVIILEAMKMETEVRAEADGVISKVWVKEGDAVAVGSQLLALA
Sequences:
>Translated_603_residues MSKPLALTDVVLRDAHQSILATRLRTEDMLPIAPLLDKVGLWSIESWGGATFDSCIRYLGEDPWERIRELKKVMPNTPQQ MLLRGQNLLGYRHYADDLVHRFVERAHTNGVDVFRVFDAMNDVRNLETAVKAVVEVGGHAQGTLSYTTSPVHNLTTWIYM AKRIEDMGCHSLCIKDMAGLLKPFEAFELISQIKSQTDLVLSLHCHATTGLSTATYQKAIEAGIDVLDTAISSMSQTYGH SATETLVAMVEGTDRATGYDMALLEEIAAYFRIIRKKYAAFEGELKGIDSRILRAQVPGGMLTNMESQLKEQGAADKLDL VLEEIPRVREDLGFLPLVTPTSQIVGTQSVINVLTGERYKSMTKETEGVLKGEYGATPAPVNAELQQRVLAGKEAITCRP ADLLESELDKLRIELKEKAAADGITLAEELDDDVLTYALFPQIGLKFLSNRNNPDVFEPKPEVAAKALEEAKKAEIAAAN KQGPETYTVTVQGQSFVVEVAEGGDISQITPSENVVPFTAPVQAAPVVDLSAVKHEQNAPLSGNIFKVHVSPGDSVKEGD VVIILEAMKMETEVRAEADGVISKVWVKEGDAVAVGSQLLALA >Mature_602_residues SKPLALTDVVLRDAHQSILATRLRTEDMLPIAPLLDKVGLWSIESWGGATFDSCIRYLGEDPWERIRELKKVMPNTPQQM LLRGQNLLGYRHYADDLVHRFVERAHTNGVDVFRVFDAMNDVRNLETAVKAVVEVGGHAQGTLSYTTSPVHNLTTWIYMA KRIEDMGCHSLCIKDMAGLLKPFEAFELISQIKSQTDLVLSLHCHATTGLSTATYQKAIEAGIDVLDTAISSMSQTYGHS ATETLVAMVEGTDRATGYDMALLEEIAAYFRIIRKKYAAFEGELKGIDSRILRAQVPGGMLTNMESQLKEQGAADKLDLV LEEIPRVREDLGFLPLVTPTSQIVGTQSVINVLTGERYKSMTKETEGVLKGEYGATPAPVNAELQQRVLAGKEAITCRPA DLLESELDKLRIELKEKAAADGITLAEELDDDVLTYALFPQIGLKFLSNRNNPDVFEPKPEVAAKALEEAKKAEIAAANK QGPETYTVTVQGQSFVVEVAEGGDISQITPSENVVPFTAPVQAAPVVDLSAVKHEQNAPLSGNIFKVHVSPGDSVKEGDV VIILEAMKMETEVRAEADGVISKVWVKEGDAVAVGSQLLALA
Specific function: Lyase and sodium transporter [H]
COG id: COG5016
COG function: function code C; Pyruvate/oxaloacetate carboxyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 biotinyl-binding domain [H]
Homologues:
Organism=Homo sapiens, GI106049528, Length=635, Percent_Identity=32.4409448818898, Blast_Score=281, Evalue=1e-75, Organism=Homo sapiens, GI106049295, Length=635, Percent_Identity=32.4409448818898, Blast_Score=281, Evalue=1e-75, Organism=Homo sapiens, GI106049292, Length=635, Percent_Identity=32.4409448818898, Blast_Score=281, Evalue=1e-75, Organism=Caenorhabditis elegans, GI17562816, Length=631, Percent_Identity=31.5372424722662, Blast_Score=302, Evalue=4e-82, Organism=Saccharomyces cerevisiae, GI6319695, Length=634, Percent_Identity=33.1230283911672, Blast_Score=316, Evalue=8e-87, Organism=Saccharomyces cerevisiae, GI6321376, Length=634, Percent_Identity=32.9652996845426, Blast_Score=306, Evalue=4e-84, Organism=Drosophila melanogaster, GI281363050, Length=627, Percent_Identity=33.1738437001595, Blast_Score=303, Evalue=3e-82, Organism=Drosophila melanogaster, GI24652224, Length=627, Percent_Identity=33.1738437001595, Blast_Score=303, Evalue=3e-82, Organism=Drosophila melanogaster, GI24652222, Length=627, Percent_Identity=33.1738437001595, Blast_Score=303, Evalue=3e-82, Organism=Drosophila melanogaster, GI24652220, Length=627, Percent_Identity=33.1738437001595, Blast_Score=303, Evalue=3e-82, Organism=Drosophila melanogaster, GI24652218, Length=627, Percent_Identity=33.1738437001595, Blast_Score=303, Evalue=3e-82, Organism=Drosophila melanogaster, GI24652212, Length=627, Percent_Identity=33.1738437001595, Blast_Score=302, Evalue=3e-82, Organism=Drosophila melanogaster, GI24652210, Length=627, Percent_Identity=33.1738437001595, Blast_Score=302, Evalue=3e-82, Organism=Drosophila melanogaster, GI24652214, Length=627, Percent_Identity=33.1738437001595, Blast_Score=302, Evalue=3e-82, Organism=Drosophila melanogaster, GI19921944, Length=627, Percent_Identity=33.1738437001595, Blast_Score=302, Evalue=3e-82, Organism=Drosophila melanogaster, GI24652216, Length=627, Percent_Identity=33.1738437001595, Blast_Score=302, Evalue=3e-82,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001882 - InterPro: IPR000089 - InterPro: IPR003379 - InterPro: IPR005776 - InterPro: IPR000891 - InterPro: IPR011053 [H]
Pfam domain/function: PF00364 Biotin_lipoyl; PF00682 HMGL-like; PF02436 PYC_OADA [H]
EC number: =4.1.1.3 [H]
Molecular weight: Translated: 65840; Mature: 65709
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: PS50991 PYR_CT ; PS50968 BIOTINYL_LIPOYL ; PS00188 BIOTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKPLALTDVVLRDAHQSILATRLRTEDMLPIAPLLDKVGLWSIESWGGATFDSCIRYLG CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEECCCCCCCHHHHHHHHC EDPWERIRELKKVMPNTPQQMLLRGQNLLGYRHYADDLVHRFVERAHTNGVDVFRVFDAM CCHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH NDVRNLETAVKAVVEVGGHAQGTLSYTTSPVHNLTTWIYMAKRIEDMGCHSLCIKDMAGL HHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LKPFEAFELISQIKSQTDLVLSLHCHATTGLSTATYQKAIEAGIDVLDTAISSMSQTYGH HCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC SATETLVAMVEGTDRATGYDMALLEEIAAYFRIIRKKYAAFEGELKGIDSRILRAQVPGG HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHCCCCC MLTNMESQLKEQGAADKLDLVLEEIPRVREDLGFLPLVTPTSQIVGTQSVINVLTGERYK HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCHHHH SMTKETEGVLKGEYGATPAPVNAELQQRVLAGKEAITCRPADLLESELDKLRIELKEKAA HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHC ADGITLAEELDDDVLTYALFPQIGLKFLSNRNNPDVFEPKPEVAAKALEEAKKAEIAAAN CCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC KQGPETYTVTVQGQSFVVEVAEGGDISQITPSENVVPFTAPVQAAPVVDLSAVKHEQNAP CCCCCEEEEEEECCEEEEEEECCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHCCCCC LSGNIFKVHVSPGDSVKEGDVVIILEAMKMETEVRAEADGVISKVWVKEGDAVAVGSQLL CCCCEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHH ALA HCC >Mature Secondary Structure SKPLALTDVVLRDAHQSILATRLRTEDMLPIAPLLDKVGLWSIESWGGATFDSCIRYLG CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEECCCCCCCHHHHHHHHC EDPWERIRELKKVMPNTPQQMLLRGQNLLGYRHYADDLVHRFVERAHTNGVDVFRVFDAM CCHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH NDVRNLETAVKAVVEVGGHAQGTLSYTTSPVHNLTTWIYMAKRIEDMGCHSLCIKDMAGL HHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LKPFEAFELISQIKSQTDLVLSLHCHATTGLSTATYQKAIEAGIDVLDTAISSMSQTYGH HCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC SATETLVAMVEGTDRATGYDMALLEEIAAYFRIIRKKYAAFEGELKGIDSRILRAQVPGG HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHCCCCC MLTNMESQLKEQGAADKLDLVLEEIPRVREDLGFLPLVTPTSQIVGTQSVINVLTGERYK HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCHHHH SMTKETEGVLKGEYGATPAPVNAELQQRVLAGKEAITCRPADLLESELDKLRIELKEKAA HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHC ADGITLAEELDDDVLTYALFPQIGLKFLSNRNNPDVFEPKPEVAAKALEEAKKAEIAAAN CCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC KQGPETYTVTVQGQSFVVEVAEGGDISQITPSENVVPFTAPVQAAPVVDLSAVKHEQNAP CCCCCEEEEEEECCEEEEEEECCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHCCCCC LSGNIFKVHVSPGDSVKEGDVVIILEAMKMETEVRAEADGVISKVWVKEGDAVAVGSQLL CCCCEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHH ALA HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2454915 [H]