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The map label for this gene is nusB [H]

Identifier: 157960994

GI number: 157960994

Start: 1411257

End: 1411664

Strand: Direct

Name: nusB [H]

Synonym: Spea_1166

Alternate gene names: 157960994

Gene position: 1411257-1411664 (Clockwise)

Preceding gene: 157960993

Following gene: 157960995

Centisome position: 27.27

GC content: 44.85

Gene sequence:

>408_bases
ATGAAGCCTTCAGAGCGCCGTAAGGCACGCCGTTTAGCCGTTCAGGCCATCTATTCATGGCAGCTAAGTGGTAACAATAT
TGCTGATGTTGAGCATGAGTTTCTAACTGAACAAGATGTTGCTGGCGTTGATATCGCTTACTTCCGTGAGCTATTAGGTG
GCGTTGCAACTAAGAAGAGTCAATTGGATGAGCTAATTACTCCATTCGTGACTCGTCCACTCGATGAAGTGGATCCAGTT
GAAAAAGCGATTGTACGTATCGCAACTTATGAACTGACATTCCGTAAGGATGTGCCTTACAAGGTAGCGATTAACGAAGC
TATCGAGCTTGCAAAAGCATTCGGCGCAGAAGATGGACATAAGTTTGTTAACGGCATTCTAGATAAGCTGGTAGCACGCA
ATAAGTAG

Upstream 100 bases:

>100_bases
CTAAAGCAGGTAACAAGGGCGGTGAAGCTGCACTTGGTCTGCTAGAGATGGTTAACGTTCTGCAAGCACTTGAAGAACAG
CTGTAATTTAGGACAATTTA

Downstream 100 bases:

>100_bases
TAGAAACGGCATCTTCGGATGCCGTTTTTGTTATATCCGCTAGGGAGCGAAGAACAGTCCGCGTATTCCCACTTTGAGCA
AGCCTTATGGCTTCCTTTTT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQDVAGVDIAYFRELLGGVATKKSQLDELITPFVTRPLDEVDPV
EKAIVRIATYELTFRKDVPYKVAINEAIELAKAFGAEDGHKFVNGILDKLVARNK

Sequences:

>Translated_135_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQDVAGVDIAYFRELLGGVATKKSQLDELITPFVTRPLDEVDPV
EKAIVRIATYELTFRKDVPYKVAINEAIELAKAFGAEDGHKFVNGILDKLVARNK
>Mature_135_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQDVAGVDIAYFRELLGGVATKKSQLDELITPFVTRPLDEVDPV
EKAIVRIATYELTFRKDVPYKVAINEAIELAKAFGAEDGHKFVNGILDKLVARNK

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=129, Percent_Identity=68.9922480620155, Blast_Score=178, Evalue=1e-46,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 15201; Mature: 15201

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQDVAGVDIAYFRELLGGVATKKS
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH
QLDELITPFVTRPLDEVDPVEKAIVRIATYELTFRKDVPYKVAINEAIELAKAFGAEDGH
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCHH
KFVNGILDKLVARNK
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQDVAGVDIAYFRELLGGVATKKS
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH
QLDELITPFVTRPLDEVDPVEKAIVRIATYELTFRKDVPYKVAINEAIELAKAFGAEDGH
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCHH
KFVNGILDKLVARNK
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA