| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is nag096 [H]
Identifier: 157960928
GI number: 157960928
Start: 1331282
End: 1334002
Strand: Direct
Name: nag096 [H]
Synonym: Spea_1100
Alternate gene names: 157960928
Gene position: 1331282-1334002 (Clockwise)
Preceding gene: 157960926
Following gene: 157960929
Centisome position: 25.73
GC content: 46.89
Gene sequence:
>2721_bases ATGAAGATTAGAGTGATAGTTTCAGCAGTAACGCTAGCATTGACAGTTAGCGCATGTTCAAAGCAGAGCGAAACTGAAGA GCTTACTAGTGCCATCTTCCCCATAGAGCAAGGCTCACAAGTCGTTGAACAATCCGCTAGTAATAAAGCGTTGACTCAAG GTTCACTAACTCAAGCTAGATTGAAGAAAATTGGTGAAACCCTAGATATTCGTTACCGCGTGGTGACTAACATCCCAGAC GAGCACTGCGACAAAGATGCGGCCGATGGTCGCTGTTTCCTAGCTGAAATCGACCTGACATCCGAAATCGCTATCGACAG TAAAGACTGGTCTATCTACTACTCTCAAATGCGACCGATTCAAAGCATTGTAGGCGATGAGTTCACTATCTCTCGCATTC AGGGCGACTTACATAAGATCTCCCCTGCAGCTGGCTTTAGCGGCATTAAAAAGGGCCAAACTAAAACGATTCAATTTCGC GGCGAGTTGTGGCAGTTATCAGAAACTGACGCCATGCCAAATTACTACATTGTTGCAGACGGTTTGGAGCCGGTTATTAT TCGCAGTACTCAGCTATCGCTCGACCCTGAAACAGGCATGGAACTACGCCCCTATGTAAGCGCGTTTACCGACAGTGAAA CTCAATATAAGCGTCGTGAAACCGATAAGCTTGAATGGGCGACAACCCAAGTCTTGTACCGCAGTAACCTAGATACACCT AACAGTCCAAAGTTAGCCGAAAATGCTATTTTGCCGACACCAACCAAGGTTGCTCTAAAGAGTGATGCAAAGTCGGTCTC ACTAAAAAGCGGCCTAAAGCTAACACTCAACGGAGTGAGCCCTGGGGCTGTAGATGCTGCGCTACAGCGTCTAGCACAGC TTGGGGTTGAGCAAACTGACAAGGGGATTAAAACGGTACTATTACCTTTGCCTGTCCCCGGAGTTTTGGGAGAGTATCGT CTCGATATCTCTAGCAGCGAGATTAAAATTCTCGCCGCAGACGATGCAGGCTTCTCCTATGGCTTAGCCTCACTGGCAGC ACTGGTTGATGTGGAAACCTTAACAGTCAACCCTATGCTGGTGGAGGATGCGCCGCGCTATGATTTTCGGGGCATGCATA TCGATGTATCGCGTAACTTCCATAGCAAACAGTTAATTCTAGATCTGTTAGATCAAATGGCGGCTTATAAGTTAAATAAG TTACACCTGCATATGGCCGATGATGAAGGTTGGCGCTTAGAAATAGCGGGATTGCCTGAACTAACAGACGTCGGCAGTAA GCGTTGCCATGATCTCAATGAAGATACTTGTCTGCTACCTCAGTTAGGAAGTGGCCCATTTAGCGAGGCTAAAGTTAATG GCTACTATAGCAAAGCAGATTATATTGAAATTCTGCAATACGCTAACGCAAGGCAAATCCAAGTGATCCCATCGATGGAT ATGCCGGGTCATTCTCGCGCCGCAATTAAATCAATGGAAGCGAGATATCGCACCTTGATGGATGCAGATAAAGCCGAACA AGCTAAACAATATCTATTGTCAGACAGTGAAGATAAAACGGTTTATTCATCAATCCAGTACTATAGCGACAACACCTTGA ACGTTTGTATGGAATCAACCTTTACCTTTATCGATAAGGTGATCGATGAAATTGCTGCGCTGCATAAGCAAGCAGGTGTA CCACTGGATCTATATCATATCGGCGCCGATGAAACAGCAGGTGCTTGGATAGAGTCACCAGCATGCAAAGCCTTTATTGC CAATAATGATAAAGGCGTAACCAAGATGGAAGAGCTTGGCGCCTACTTTATTGAAAGAACCGCTAAGCTACTTGCTGATA AAGGTATTGAAGCCGCAGGCTGGAGCGATGGTATGAGCCATACTCGTCCTGAGAACATGCCAAAGCAAGTCCAATCCAAT ATTTGGGATGTAGTGGCTCATGGTGGACACCAGCGTGCGCATCAGCAAGCAAATCTTGGCTGGCAGGCGGTACTCGGACA ACCTGAAGTGCTGTATTTCGATTTCCCCTATGAGGCTGATCCTAAAGAGCATGGTTATTACTGGGCGAGTCGTAATACTA ACTCTAAAAAAATCCATAGCTTTATGGCTGGGAACTTACCCGCCAATGCGGAGCAATGGACCGACATCGAAGCCCTTCCA TTTGAAGCCGATGACACCCTAAAAACAGATGAAGCAGGCAAGGTGATTAACGGGCCCTTAAAAGCATCATTCAGCTTTGC GGGGATTCAAGGTCAGCTATGGAGCGAAACGGTACGCAGTGATGAGGTCGCCGAGTATATGATGTTTCCTCGGCTGATGA TGCTTGCAGAGCGTGCATGGCATCAGCCAAGCTGGGAAGTGCCCTATCAGCATCAAGGCGCTGTTTATAATCAAACTAGC GGCTATTTCACTAAAGAGATGCGCCAAGCCCAAGCCAATGATTGGCACCGAGTAGCTAACACTTTAGGGGCTAAAGAGTT GCTAAAACTCGATAAAGCCAATATTGCCTATAGAGTGCCAACGCCTGGGGCTGTCATTAAAGAGGGGAAGCTGTTTGCCA ATGTTATTTTCCCAGGGCTTAAAATTGAGTACCGCGACGCTGGTGGACAGTGGCAGGCATACGCAGAGGGCGTAGAGGGC GTAGAGGTGACCACTCCGGTTGAAGTTCGAGTTATTGCCGCAGATGGCAAACGTAAAGGACGTACCTTAGTTGTTAATTA A
Upstream 100 bases:
>100_bases CTGAGTAAGATTGAGTTCTCGTTGATTTCCATAAGGGGGAGAAATAACGAGGTCGAGTAAGAGCATTTCACCTTTTAATA ATAGAATCATAGGGAATGTA
Downstream 100 bases:
>100_bases CAGATGGTTAACAGCTGTTGGTGTTACCTATGTAAGCAATAACTAAGCCTAAACGTAGCACTGCTCATGGTATTGCTACG TTTTCCTTTTTTTGTTTGGT
Product: beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-GlcNAcase; Beta-N-acetylhexosaminidase; Beta-NAHase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 906; Mature: 906
Protein sequence:
>906_residues MKIRVIVSAVTLALTVSACSKQSETEELTSAIFPIEQGSQVVEQSASNKALTQGSLTQARLKKIGETLDIRYRVVTNIPD EHCDKDAADGRCFLAEIDLTSEIAIDSKDWSIYYSQMRPIQSIVGDEFTISRIQGDLHKISPAAGFSGIKKGQTKTIQFR GELWQLSETDAMPNYYIVADGLEPVIIRSTQLSLDPETGMELRPYVSAFTDSETQYKRRETDKLEWATTQVLYRSNLDTP NSPKLAENAILPTPTKVALKSDAKSVSLKSGLKLTLNGVSPGAVDAALQRLAQLGVEQTDKGIKTVLLPLPVPGVLGEYR LDISSSEIKILAADDAGFSYGLASLAALVDVETLTVNPMLVEDAPRYDFRGMHIDVSRNFHSKQLILDLLDQMAAYKLNK LHLHMADDEGWRLEIAGLPELTDVGSKRCHDLNEDTCLLPQLGSGPFSEAKVNGYYSKADYIEILQYANARQIQVIPSMD MPGHSRAAIKSMEARYRTLMDADKAEQAKQYLLSDSEDKTVYSSIQYYSDNTLNVCMESTFTFIDKVIDEIAALHKQAGV PLDLYHIGADETAGAWIESPACKAFIANNDKGVTKMEELGAYFIERTAKLLADKGIEAAGWSDGMSHTRPENMPKQVQSN IWDVVAHGGHQRAHQQANLGWQAVLGQPEVLYFDFPYEADPKEHGYYWASRNTNSKKIHSFMAGNLPANAEQWTDIEALP FEADDTLKTDEAGKVINGPLKASFSFAGIQGQLWSETVRSDEVAEYMMFPRLMMLAERAWHQPSWEVPYQHQGAVYNQTS GYFTKEMRQAQANDWHRVANTLGAKELLKLDKANIAYRVPTPGAVIKEGKLFANVIFPGLKIEYRDAGGQWQAYAEGVEG VEVTTPVEVRVIAADGKRKGRTLVVN
Sequences:
>Translated_906_residues MKIRVIVSAVTLALTVSACSKQSETEELTSAIFPIEQGSQVVEQSASNKALTQGSLTQARLKKIGETLDIRYRVVTNIPD EHCDKDAADGRCFLAEIDLTSEIAIDSKDWSIYYSQMRPIQSIVGDEFTISRIQGDLHKISPAAGFSGIKKGQTKTIQFR GELWQLSETDAMPNYYIVADGLEPVIIRSTQLSLDPETGMELRPYVSAFTDSETQYKRRETDKLEWATTQVLYRSNLDTP NSPKLAENAILPTPTKVALKSDAKSVSLKSGLKLTLNGVSPGAVDAALQRLAQLGVEQTDKGIKTVLLPLPVPGVLGEYR LDISSSEIKILAADDAGFSYGLASLAALVDVETLTVNPMLVEDAPRYDFRGMHIDVSRNFHSKQLILDLLDQMAAYKLNK LHLHMADDEGWRLEIAGLPELTDVGSKRCHDLNEDTCLLPQLGSGPFSEAKVNGYYSKADYIEILQYANARQIQVIPSMD MPGHSRAAIKSMEARYRTLMDADKAEQAKQYLLSDSEDKTVYSSIQYYSDNTLNVCMESTFTFIDKVIDEIAALHKQAGV PLDLYHIGADETAGAWIESPACKAFIANNDKGVTKMEELGAYFIERTAKLLADKGIEAAGWSDGMSHTRPENMPKQVQSN IWDVVAHGGHQRAHQQANLGWQAVLGQPEVLYFDFPYEADPKEHGYYWASRNTNSKKIHSFMAGNLPANAEQWTDIEALP FEADDTLKTDEAGKVINGPLKASFSFAGIQGQLWSETVRSDEVAEYMMFPRLMMLAERAWHQPSWEVPYQHQGAVYNQTS GYFTKEMRQAQANDWHRVANTLGAKELLKLDKANIAYRVPTPGAVIKEGKLFANVIFPGLKIEYRDAGGQWQAYAEGVEG VEVTTPVEVRVIAADGKRKGRTLVVN >Mature_906_residues MKIRVIVSAVTLALTVSACSKQSETEELTSAIFPIEQGSQVVEQSASNKALTQGSLTQARLKKIGETLDIRYRVVTNIPD EHCDKDAADGRCFLAEIDLTSEIAIDSKDWSIYYSQMRPIQSIVGDEFTISRIQGDLHKISPAAGFSGIKKGQTKTIQFR GELWQLSETDAMPNYYIVADGLEPVIIRSTQLSLDPETGMELRPYVSAFTDSETQYKRRETDKLEWATTQVLYRSNLDTP NSPKLAENAILPTPTKVALKSDAKSVSLKSGLKLTLNGVSPGAVDAALQRLAQLGVEQTDKGIKTVLLPLPVPGVLGEYR LDISSSEIKILAADDAGFSYGLASLAALVDVETLTVNPMLVEDAPRYDFRGMHIDVSRNFHSKQLILDLLDQMAAYKLNK LHLHMADDEGWRLEIAGLPELTDVGSKRCHDLNEDTCLLPQLGSGPFSEAKVNGYYSKADYIEILQYANARQIQVIPSMD MPGHSRAAIKSMEARYRTLMDADKAEQAKQYLLSDSEDKTVYSSIQYYSDNTLNVCMESTFTFIDKVIDEIAALHKQAGV PLDLYHIGADETAGAWIESPACKAFIANNDKGVTKMEELGAYFIERTAKLLADKGIEAAGWSDGMSHTRPENMPKQVQSN IWDVVAHGGHQRAHQQANLGWQAVLGQPEVLYFDFPYEADPKEHGYYWASRNTNSKKIHSFMAGNLPANAEQWTDIEALP FEADDTLKTDEAGKVINGPLKASFSFAGIQGQLWSETVRSDEVAEYMMFPRLMMLAERAWHQPSWEVPYQHQGAVYNQTS GYFTKEMRQAQANDWHRVANTLGAKELLKLDKANIAYRVPTPGAVIKEGKLFANVIFPGLKIEYRDAGGQWQAYAEGVEG VEVTTPVEVRVIAADGKRKGRTLVVN
Specific function: Unknown
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Homo sapiens, GI4504373, Length=276, Percent_Identity=25.7246376811594, Blast_Score=93, Evalue=1e-18, Organism=Homo sapiens, GI189181666, Length=319, Percent_Identity=24.4514106583072, Blast_Score=87, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17569815, Length=409, Percent_Identity=22.9828850855746, Blast_Score=92, Evalue=2e-18, Organism=Drosophila melanogaster, GI24657468, Length=496, Percent_Identity=21.5725806451613, Blast_Score=83, Evalue=7e-16, Organism=Drosophila melanogaster, GI17647501, Length=496, Percent_Identity=21.5725806451613, Blast_Score=83, Evalue=7e-16, Organism=Drosophila melanogaster, GI281365639, Length=496, Percent_Identity=21.5725806451613, Blast_Score=83, Evalue=1e-15, Organism=Drosophila melanogaster, GI24657474, Length=496, Percent_Identity=21.5725806451613, Blast_Score=83, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR008965 - InterPro: IPR004866 - InterPro: IPR012291 - InterPro: IPR001540 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF03173 CHB_HEX; PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 100420; Mature: 100420
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIRVIVSAVTLALTVSACSKQSETEELTSAIFPIEQGSQVVEQSASNKALTQGSLTQAR CEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHH LKKIGETLDIRYRVVTNIPDEHCDKDAADGRCFLAEIDLTSEIAIDSKDWSIYYSQMRPI HHHCCCCCEEEEEEEECCCHHHCCCCCCCCEEEEEEECCCCEEEECCCCCEEEHHHHHHH QSIVGDEFTISRIQGDLHKISPAAGFSGIKKGQTKTIQFRGELWQLSETDAMPNYYIVAD HHHHCCCEEEHHHHCHHHHCCCCCCCCCCCCCCCEEEEEECCEEECCCCCCCCCEEEEEC GLEPVIIRSTQLSLDPETGMELRPYVSAFTDSETQYKRRETDKLEWATTQVLYRSNLDTP CCCEEEEEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHCCCHHHHHHHHHHEECCCCCC NSPKLAENAILPTPTKVALKSDAKSVSLKSGLKLTLNGVSPGAVDAALQRLAQLGVEQTD CCCCHHHCCCCCCCCCEEECCCCCCEECCCCCEEEECCCCCCHHHHHHHHHHHCCCHHCC KGIKTVLLPLPVPGVLGEYRLDISSSEIKILAADDAGFSYGLASLAALVDVETLTVNPML CCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHEEEEEEECCEE VEDAPRYDFRGMHIDVSRNFHSKQLILDLLDQMAAYKLNKLHLHMADDEGWRLEIAGLPE ECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECEEEEEEECCCCCEEEECCCCC LTDVGSKRCHDLNEDTCLLPQLGSGPFSEAKVNGYYSKADYIEILQYANARQIQVIPSMD HHHCCHHHCCCCCCCCEECCCCCCCCCCCCEECCEECHHHHHHHHHHCCCCEEEEEECCC MPGHSRAAIKSMEARYRTLMDADKAEQAKQYLLSDSEDKTVYSSIQYYSDNTLNVCMEST CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHH FTFIDKVIDEIAALHKQAGVPLDLYHIGADETAGAWIESPACKAFIANNDKGVTKMEELG HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH AYFIERTAKLLADKGIEAAGWSDGMSHTRPENMPKQVQSNIWDVVAHGGHQRAHQQANLG HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCC WQAVLGQPEVLYFDFPYEADPKEHGYYWASRNTNSKKIHSFMAGNLPANAEQWTDIEALP CEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHCCCCEECC FEADDTLKTDEAGKVINGPLKASFSFAGIQGQLWSETVRSDEVAEYMMFPRLMMLAERAW CCCCCCCCCCCCCCEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC HQPSWEVPYQHQGAVYNQTSGYFTKEMRQAQANDWHRVANTLGAKELLKLDKANIAYRVP CCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCEEEECC TPGAVIKEGKLFANVIFPGLKIEYRDAGGQWQAYAEGVEGVEVTTPVEVRVIAADGKRKG CCCCEEECCCEEEEEECCCCEEEEECCCCCCHHHHCCCCCEEEECCEEEEEEEECCCCCC RTLVVN CEEEEC >Mature Secondary Structure MKIRVIVSAVTLALTVSACSKQSETEELTSAIFPIEQGSQVVEQSASNKALTQGSLTQAR CEEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHH LKKIGETLDIRYRVVTNIPDEHCDKDAADGRCFLAEIDLTSEIAIDSKDWSIYYSQMRPI HHHCCCCCEEEEEEEECCCHHHCCCCCCCCEEEEEEECCCCEEEECCCCCEEEHHHHHHH QSIVGDEFTISRIQGDLHKISPAAGFSGIKKGQTKTIQFRGELWQLSETDAMPNYYIVAD HHHHCCCEEEHHHHCHHHHCCCCCCCCCCCCCCCEEEEEECCEEECCCCCCCCCEEEEEC GLEPVIIRSTQLSLDPETGMELRPYVSAFTDSETQYKRRETDKLEWATTQVLYRSNLDTP CCCEEEEEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHCCCHHHHHHHHHHEECCCCCC NSPKLAENAILPTPTKVALKSDAKSVSLKSGLKLTLNGVSPGAVDAALQRLAQLGVEQTD CCCCHHHCCCCCCCCCEEECCCCCCEECCCCCEEEECCCCCCHHHHHHHHHHHCCCHHCC KGIKTVLLPLPVPGVLGEYRLDISSSEIKILAADDAGFSYGLASLAALVDVETLTVNPML CCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHEEEEEEECCEE VEDAPRYDFRGMHIDVSRNFHSKQLILDLLDQMAAYKLNKLHLHMADDEGWRLEIAGLPE ECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHEECEEEEEEECCCCCEEEECCCCC LTDVGSKRCHDLNEDTCLLPQLGSGPFSEAKVNGYYSKADYIEILQYANARQIQVIPSMD HHHCCHHHCCCCCCCCEECCCCCCCCCCCCEECCEECHHHHHHHHHHCCCCEEEEEECCC MPGHSRAAIKSMEARYRTLMDADKAEQAKQYLLSDSEDKTVYSSIQYYSDNTLNVCMEST CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHH FTFIDKVIDEIAALHKQAGVPLDLYHIGADETAGAWIESPACKAFIANNDKGVTKMEELG HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH AYFIERTAKLLADKGIEAAGWSDGMSHTRPENMPKQVQSNIWDVVAHGGHQRAHQQANLG HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCC WQAVLGQPEVLYFDFPYEADPKEHGYYWASRNTNSKKIHSFMAGNLPANAEQWTDIEALP CEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHCCCCEECC FEADDTLKTDEAGKVINGPLKASFSFAGIQGQLWSETVRSDEVAEYMMFPRLMMLAERAW CCCCCCCCCCCCCCEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC HQPSWEVPYQHQGAVYNQTSGYFTKEMRQAQANDWHRVANTLGAKELLKLDKANIAYRVP CCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHCHHHHHHHCCCCEEEECC TPGAVIKEGKLFANVIFPGLKIEYRDAGGQWQAYAEGVEGVEVTTPVEVRVIAADGKRKG CCCCEEECCCEEEEEECCCCEEEEECCCCCCHHHHCCCCCEEEECCEEEEEEEECCCCCC RTLVVN CEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7574618 [H]