| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157960727
Identifier: 157960727
GI number: 157960727
Start: 1094937
End: 1097900
Strand: Reverse
Name: 157960727
Synonym: Spea_0899
Alternate gene names: NA
Gene position: 1097900-1094937 (Counterclockwise)
Preceding gene: 157960729
Following gene: 157960725
Centisome position: 21.22
GC content: 48.38
Gene sequence:
>2964_bases ATGAAGAGTTGGTTACTGTCAAGTTGCGTGTTACTGGGTTTATCGGCCTGCGGAGGGTCTGGGGATTCAGGAGCCGACGA TAATGGTGGCGTCACCCCACCCACGGTTCAAGCACCAAGTGTAGAACTTGGCGATGGGATTACGACATGGAACGATAAGC TAATAACTTTAACTGCCGAGGTTAAGGTGTACGCATCCGGCAACTCAACATTTGAATGGCACCAAGTGTCGGGACCAGAG GTATCATTATCAAACGTCAGCCTTGACGGCGTGACTATCGATGCTAGCGCACTCGAACATGACGCTAGCATTACCCTCAG TCTAATGGTCAAAGATAGCAGCAATCAAACTGCTAGCGATCAAATAAGCATCCAGCTCAATGACAGAATTAGCACGGCAA TGGCAAACGGCGACGCCAGTATTGCAACCGACCTCTCGCCACAAATTGCCAAGCGAGCCCTAAATCATATCGAGCAATAC CGCCTAGATGGCAAGACACTGCTAGAAAGTATCTACAAAAACGATACCGTTGAATATGATCAAGGGCGTCATTCACAGAT GATCCAACTTGCTGGGGCCGAACACGCTTACCCGCAGAATAAAGCCTACGCTATAGTCACAGGTAATAAAGGCCTAACTT TTGCTGCCACCAACGATAAAGCAGGCCAACGTAATGCCGCCTTTGGTACCGATATTATCTCTAGTATGCAACAGGGTCAT AATGCCAGTTTCGAGCCTAGTTTCAAGCGACTACTCGGCTGGATGTTAGCGCAAGATCAAACAGCCCTTGCAGAGCCTAA GCAGATAAGACTGTTTTTGATGAGTGGTAATACCGTTAATCGCATCAATAGCTGGATTGAGCTGCATTATCCCAATTGGC AGGTCGAAACCTGCAGCGATGAAGCAACACTCTCAAGCTGTTTGGCCGAGGCGCAATTAGTGCTCACCGGATCATCAGAG CTATTTACAATCGAGACTGTTGCACCACTTATCGCCCAAATACAAGCTGACAAACAGCCTATTTTATATCTGCATCTCCA CAGCTGGAATAGCGTACCATTAACGCAAACCGTGCTTAACCCTATGGGCTTTAGCATGCAAGGTCCTGGCGGTCCTGGGA ACTACTTCGCTCAAGACAAGGCCGACTGGTCCTCTGTGACGGCGATGCTTGATAGCTACAGTGCGCTAGATAAAGAACAG CTATGGTTAACACTTTTTGATAGCGAGCGAGTCGACTTTAACCTTGCTAACTGCGCCAGCAGTTGTGATGCCAAATTTAA CGATGTCTATCGTCCAGCTCTTGCGACTATCCGTAGTAACATTCAAGCTCTAGAAACCAATAAGCTCGATATCTTTAATC AAGCCGATTACTCTTTGTATAAGTTGCTAATTATTCTCGGTGATAACTACCGCCAGCAGATCCAGTACCCTATGGATGTG GCGACAACCGACAGCTTAAGCTACCTCAAAGCCTATTTCGCCGACCATAGCGTGTATAACTTCCGTGATATTAACGCCGT ACCAAAAGACTTAGGCAACTTTAGTCGCACTGACTTTAGCCATATTACCGCCGTCGACCAAGATGTGAGTTTGGTGAGTA AAAAAGGCTTTCGCTCAGCAGGCGTGTACGCCCTCCCAGGCCAAACCGTGAGTGTGACGAGAAAGGACAATAGCGAGTTA CGCACTTGGGTGTTTATCAACACGCTACGCTCTGGCTCAACCCATGAGTTTGCAAGCGGAGGCTATAACCGCCCTAAACT TTTGCAATCGACTCATATCGAAGTCAAAGCTGGTGAAACCATTAAGTTTACCAGTCCCTATGGCGGCCCGATGCAAGTCC GCTTTGACCAAACTGATCTGGCGACACAATTTAGCTTTCAGCAGGTTGGGCAGCATCCGTACTGGCGTAAAGGCATGGAC GGCAATCAGTTTATGCAAGACTTAGCGGCCAATCAGTATGACTGGGCTGAACTTGCAAGCGAACATTTTGAGGTGCACTC TAAGATCGATAAGATGCAGGCCACCATGGAGCATGAGCCACTTTGGAATACCCCCGAGAAAATGGCAGCCGCGATCATGA CTCAGGTACATAACTACCCACATCTGTTAGCAGGATTTAAGGGGCCGTTTATCGATGAGGTTGCAGAGATCACCGAGTTT GCAGCCAGTCAAGGCTGGCAAGTCGATAGCATAGATACTGTTAAGCATATGAATGCCGACCAAGCCACCTGTGGTTATGG CTGCTCAGGCAACCCTTACGATGCATACTGGTCATTTAGCCCAACAAGCCATGGTGACATTCATGAGCTCGGCCATGGCC TTGAAAAAGGACGTTTGCGCTTCGATGGCCATGACGGTCACTCTTCAACTAACCCATATTCTTACTACACCAAGTCGCGT GCCTATACAGAGCTTGGCAAGTTACCCTCTTGCCAAGGGTTAGATATCAACGATGAGTTCGCCGTACTGCAAGCAAGTAT GAATCAAGCCGATCCGTTCGCTTACATGCAAGCCGCGAAACTAACCAGCTGGTCGAACGGTATGGCCACCATGCTACAGA TGATGGTTGCCGCGCAGAAACATAGCGCGCTCGAAAACGGTTGGCATCTTCTCGCTAGGCTGCACATATTACTACGCGAG TTTGAGCGCGCTAAAGGCTCGGAAGAACTCTGGCTTCAGAAACGTGAGCAGCTAGGTTTCAGTCTATTCTCTCTCGATGC CGCCAAGAACATCTCCAATAATGACTTCTTGATGGTAGCTATGAGCTACGCCACTAAACTGGATTATCGCGAGCTGTATC AAATGTGGGGCTTAACTACGACGCCATTGGCAAAAGAGCAGCTTGCTAGCTTTAACTTCACAGTTATCGACAGAAAAGTC TACGTCTACAATCCGGGGGATTATTGCTTAAGCTTAGATCTGCAGGCAGTTGCCGTAGACGGTCAGCAAGCATGGCCGCT ATAA
Upstream 100 bases:
>100_bases CCGCCTTAACCATTGTTTTTTAAGGTTTATTTTCTTGGCTTGTTGATTTTGATATCAAAAGCACTCAAGATGTGTCCAAA CTGCATGGAGTGTTAACAAA
Downstream 100 bases:
>100_bases ACATCGCTAATCCACCAGCTATTGGATAAGTCGCAATAATCACGACAAGAAAAGCCACCTAATACCAATCCATGATATTA GGTGGCTTATTAATTTATCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 987; Mature: 987
Protein sequence:
>987_residues MKSWLLSSCVLLGLSACGGSGDSGADDNGGVTPPTVQAPSVELGDGITTWNDKLITLTAEVKVYASGNSTFEWHQVSGPE VSLSNVSLDGVTIDASALEHDASITLSLMVKDSSNQTASDQISIQLNDRISTAMANGDASIATDLSPQIAKRALNHIEQY RLDGKTLLESIYKNDTVEYDQGRHSQMIQLAGAEHAYPQNKAYAIVTGNKGLTFAATNDKAGQRNAAFGTDIISSMQQGH NASFEPSFKRLLGWMLAQDQTALAEPKQIRLFLMSGNTVNRINSWIELHYPNWQVETCSDEATLSSCLAEAQLVLTGSSE LFTIETVAPLIAQIQADKQPILYLHLHSWNSVPLTQTVLNPMGFSMQGPGGPGNYFAQDKADWSSVTAMLDSYSALDKEQ LWLTLFDSERVDFNLANCASSCDAKFNDVYRPALATIRSNIQALETNKLDIFNQADYSLYKLLIILGDNYRQQIQYPMDV ATTDSLSYLKAYFADHSVYNFRDINAVPKDLGNFSRTDFSHITAVDQDVSLVSKKGFRSAGVYALPGQTVSVTRKDNSEL RTWVFINTLRSGSTHEFASGGYNRPKLLQSTHIEVKAGETIKFTSPYGGPMQVRFDQTDLATQFSFQQVGQHPYWRKGMD GNQFMQDLAANQYDWAELASEHFEVHSKIDKMQATMEHEPLWNTPEKMAAAIMTQVHNYPHLLAGFKGPFIDEVAEITEF AASQGWQVDSIDTVKHMNADQATCGYGCSGNPYDAYWSFSPTSHGDIHELGHGLEKGRLRFDGHDGHSSTNPYSYYTKSR AYTELGKLPSCQGLDINDEFAVLQASMNQADPFAYMQAAKLTSWSNGMATMLQMMVAAQKHSALENGWHLLARLHILLRE FERAKGSEELWLQKREQLGFSLFSLDAAKNISNNDFLMVAMSYATKLDYRELYQMWGLTTTPLAKEQLASFNFTVIDRKV YVYNPGDYCLSLDLQAVAVDGQQAWPL
Sequences:
>Translated_987_residues MKSWLLSSCVLLGLSACGGSGDSGADDNGGVTPPTVQAPSVELGDGITTWNDKLITLTAEVKVYASGNSTFEWHQVSGPE VSLSNVSLDGVTIDASALEHDASITLSLMVKDSSNQTASDQISIQLNDRISTAMANGDASIATDLSPQIAKRALNHIEQY RLDGKTLLESIYKNDTVEYDQGRHSQMIQLAGAEHAYPQNKAYAIVTGNKGLTFAATNDKAGQRNAAFGTDIISSMQQGH NASFEPSFKRLLGWMLAQDQTALAEPKQIRLFLMSGNTVNRINSWIELHYPNWQVETCSDEATLSSCLAEAQLVLTGSSE LFTIETVAPLIAQIQADKQPILYLHLHSWNSVPLTQTVLNPMGFSMQGPGGPGNYFAQDKADWSSVTAMLDSYSALDKEQ LWLTLFDSERVDFNLANCASSCDAKFNDVYRPALATIRSNIQALETNKLDIFNQADYSLYKLLIILGDNYRQQIQYPMDV ATTDSLSYLKAYFADHSVYNFRDINAVPKDLGNFSRTDFSHITAVDQDVSLVSKKGFRSAGVYALPGQTVSVTRKDNSEL RTWVFINTLRSGSTHEFASGGYNRPKLLQSTHIEVKAGETIKFTSPYGGPMQVRFDQTDLATQFSFQQVGQHPYWRKGMD GNQFMQDLAANQYDWAELASEHFEVHSKIDKMQATMEHEPLWNTPEKMAAAIMTQVHNYPHLLAGFKGPFIDEVAEITEF AASQGWQVDSIDTVKHMNADQATCGYGCSGNPYDAYWSFSPTSHGDIHELGHGLEKGRLRFDGHDGHSSTNPYSYYTKSR AYTELGKLPSCQGLDINDEFAVLQASMNQADPFAYMQAAKLTSWSNGMATMLQMMVAAQKHSALENGWHLLARLHILLRE FERAKGSEELWLQKREQLGFSLFSLDAAKNISNNDFLMVAMSYATKLDYRELYQMWGLTTTPLAKEQLASFNFTVIDRKV YVYNPGDYCLSLDLQAVAVDGQQAWPL >Mature_987_residues MKSWLLSSCVLLGLSACGGSGDSGADDNGGVTPPTVQAPSVELGDGITTWNDKLITLTAEVKVYASGNSTFEWHQVSGPE VSLSNVSLDGVTIDASALEHDASITLSLMVKDSSNQTASDQISIQLNDRISTAMANGDASIATDLSPQIAKRALNHIEQY RLDGKTLLESIYKNDTVEYDQGRHSQMIQLAGAEHAYPQNKAYAIVTGNKGLTFAATNDKAGQRNAAFGTDIISSMQQGH NASFEPSFKRLLGWMLAQDQTALAEPKQIRLFLMSGNTVNRINSWIELHYPNWQVETCSDEATLSSCLAEAQLVLTGSSE LFTIETVAPLIAQIQADKQPILYLHLHSWNSVPLTQTVLNPMGFSMQGPGGPGNYFAQDKADWSSVTAMLDSYSALDKEQ LWLTLFDSERVDFNLANCASSCDAKFNDVYRPALATIRSNIQALETNKLDIFNQADYSLYKLLIILGDNYRQQIQYPMDV ATTDSLSYLKAYFADHSVYNFRDINAVPKDLGNFSRTDFSHITAVDQDVSLVSKKGFRSAGVYALPGQTVSVTRKDNSEL RTWVFINTLRSGSTHEFASGGYNRPKLLQSTHIEVKAGETIKFTSPYGGPMQVRFDQTDLATQFSFQQVGQHPYWRKGMD GNQFMQDLAANQYDWAELASEHFEVHSKIDKMQATMEHEPLWNTPEKMAAAIMTQVHNYPHLLAGFKGPFIDEVAEITEF AASQGWQVDSIDTVKHMNADQATCGYGCSGNPYDAYWSFSPTSHGDIHELGHGLEKGRLRFDGHDGHSSTNPYSYYTKSR AYTELGKLPSCQGLDINDEFAVLQASMNQADPFAYMQAAKLTSWSNGMATMLQMMVAAQKHSALENGWHLLARLHILLRE FERAKGSEELWLQKREQLGFSLFSLDAAKNISNNDFLMVAMSYATKLDYRELYQMWGLTTTPLAKEQLASFNFTVIDRKV YVYNPGDYCLSLDLQAVAVDGQQAWPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 109431; Mature: 109431
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSWLLSSCVLLGLSACGGSGDSGADDNGGVTPPTVQAPSVELGDGITTWNDKLITLTAE CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEECCCEEEEEEEE VKVYASGNSTFEWHQVSGPEVSLSNVSLDGVTIDASALEHDASITLSLMVKDSSNQTASD EEEEECCCCEEEEEECCCCEEEECEEEECCEEEEHHHHCCCCEEEEEEEEECCCCCCCCC QISIQLNDRISTAMANGDASIATDLSPQIAKRALNHIEQYRLDGKTLLESIYKNDTVEYD EEEEEECCCCHHHHCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC QGRHSQMIQLAGAEHAYPQNKAYAIVTGNKGLTFAATNDKAGQRNAAFGTDIISSMQQGH CCCCHHHEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC NASFEPSFKRLLGWMLAQDQTALAEPKQIRLFLMSGNTVNRINSWIELHYPNWQVETCSD CCCCCHHHHHHHHHHHHCCCHHHCCCCEEEEEEEECCCHHHCCCEEEEECCCCEEEECCC EATLSSCLAEAQLVLTGSSELFTIETVAPLIAQIQADKQPILYLHLHSWNSVPLTQTVLN HHHHHHHHHCCEEEEECCCCEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHC PMGFSMQGPGGPGNYFAQDKADWSSVTAMLDSYSALDKEQLWLTLFDSERVDFNLANCAS CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEHHHHHH SCDAKFNDVYRPALATIRSNIQALETNKLDIFNQADYSLYKLLIILGDNYRQQIQYPMDV HCCCHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCHHEEEEEEEECCCHHHHCCCCCCC ATTDSLSYLKAYFADHSVYNFRDINAVPKDLGNFSRTDFSHITAVDQDVSLVSKKGFRSA CCCCHHHHHHHHHHCCCCCCEECCCCCHHHHCCCCCCCCHHHEECCCHHHHHHHCCCCCC GVYALPGQTVSVTRKDNSELRTWVFINTLRSGSTHEFASGGYNRPKLLQSTHIEVKAGET CEEEECCCEEEEEECCCCCEEEEEEEEECCCCCCCCHHCCCCCCCCHHHCCEEEEECCCE IKFTSPYGGPMQVRFDQTDLATQFSFQQVGQHPYWRKGMDGNQFMQDLAANQYDWAELAS EEEECCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHH EHFEVHSKIDKMQATMEHEPLWNTPEKMAAAIMTQVHNYPHLLAGFKGPFIDEVAEITEF HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHH AASQGWQVDSIDTVKHMNADQATCGYGCSGNPYDAYWSFSPTSHGDIHELGHGLEKGRLR HHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHCCCHHHCCEE FDGHDGHSSTNPYSYYTKSRAYTELGKLPSCQGLDINDEFAVLQASMNQADPFAYMQAAK ECCCCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHH LTSWSNGMATMLQMMVAAQKHSALENGWHLLARLHILLREFERAKGSEELWLQKREQLGF HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC SLFSLDAAKNISNNDFLMVAMSYATKLDYRELYQMWGLTTTPLAKEQLASFNFTVIDRKV EEEEEHHHCCCCCCCEEEEEEHHHHHCCHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEE YVYNPGDYCLSLDLQAVAVDGQQAWPL EEECCCCEEEEEEEEEEEECCCCCCCC >Mature Secondary Structure MKSWLLSSCVLLGLSACGGSGDSGADDNGGVTPPTVQAPSVELGDGITTWNDKLITLTAE CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEECCCEEEEEEEE VKVYASGNSTFEWHQVSGPEVSLSNVSLDGVTIDASALEHDASITLSLMVKDSSNQTASD EEEEECCCCEEEEEECCCCEEEECEEEECCEEEEHHHHCCCCEEEEEEEEECCCCCCCCC QISIQLNDRISTAMANGDASIATDLSPQIAKRALNHIEQYRLDGKTLLESIYKNDTVEYD EEEEEECCCCHHHHCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC QGRHSQMIQLAGAEHAYPQNKAYAIVTGNKGLTFAATNDKAGQRNAAFGTDIISSMQQGH CCCCHHHEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC NASFEPSFKRLLGWMLAQDQTALAEPKQIRLFLMSGNTVNRINSWIELHYPNWQVETCSD CCCCCHHHHHHHHHHHHCCCHHHCCCCEEEEEEEECCCHHHCCCEEEEECCCCEEEECCC EATLSSCLAEAQLVLTGSSELFTIETVAPLIAQIQADKQPILYLHLHSWNSVPLTQTVLN HHHHHHHHHCCEEEEECCCCEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHC PMGFSMQGPGGPGNYFAQDKADWSSVTAMLDSYSALDKEQLWLTLFDSERVDFNLANCAS CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEHHHHHH SCDAKFNDVYRPALATIRSNIQALETNKLDIFNQADYSLYKLLIILGDNYRQQIQYPMDV HCCCHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCHHEEEEEEEECCCHHHHCCCCCCC ATTDSLSYLKAYFADHSVYNFRDINAVPKDLGNFSRTDFSHITAVDQDVSLVSKKGFRSA CCCCHHHHHHHHHHCCCCCCEECCCCCHHHHCCCCCCCCHHHEECCCHHHHHHHCCCCCC GVYALPGQTVSVTRKDNSELRTWVFINTLRSGSTHEFASGGYNRPKLLQSTHIEVKAGET CEEEECCCEEEEEECCCCCEEEEEEEEECCCCCCCCHHCCCCCCCCHHHCCEEEEECCCE IKFTSPYGGPMQVRFDQTDLATQFSFQQVGQHPYWRKGMDGNQFMQDLAANQYDWAELAS EEEECCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHH EHFEVHSKIDKMQATMEHEPLWNTPEKMAAAIMTQVHNYPHLLAGFKGPFIDEVAEITEF HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHH AASQGWQVDSIDTVKHMNADQATCGYGCSGNPYDAYWSFSPTSHGDIHELGHGLEKGRLR HHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHCCCHHHCCEE FDGHDGHSSTNPYSYYTKSRAYTELGKLPSCQGLDINDEFAVLQASMNQADPFAYMQAAK ECCCCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHH LTSWSNGMATMLQMMVAAQKHSALENGWHLLARLHILLREFERAKGSEELWLQKREQLGF HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC SLFSLDAAKNISNNDFLMVAMSYATKLDYRELYQMWGLTTTPLAKEQLASFNFTVIDRKV EEEEEHHHCCCCCCCEEEEEEHHHHHCCHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEE YVYNPGDYCLSLDLQAVAVDGQQAWPL EEECCCCEEEEEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA