Click here to switch to the map view.

The map label for this gene is ycfM [C]

Identifier: 157960652

GI number: 157960652

Start: 1023747

End: 1024352

Strand: Reverse

Name: ycfM [C]

Synonym: Spea_0824

Alternate gene names: 157960652

Gene position: 1024352-1023747 (Counterclockwise)

Preceding gene: 157960653

Following gene: 157960651

Centisome position: 19.8

GC content: 42.9

Gene sequence:

>606_bases
ATGGAACTTACTATGAAACAATTTAAAGTCATTTTTATTCTTGCAGCAGTTATCGGTTTATCTGCCTGCCAATCAAAAGT
TGAATACGGTGATGCCACAGAAGTGGAAACCGTTAACGAGAACTTCGGCTCAACCGATCTTCAAGCTATAGCCGCTAAGA
TGGTCGACAGCATGCTGACCTTCCCACCCGTTGTGGCGATGACAGCCAATGACCGCCCAATTATTTTTGTCGATAAGATC
AAGAACAAAACCTCTGAGCATATCGATACAGAATCAGTTACCGATTCAATCAGCAACAAGCTACTACGCTCAGGTAAATT
CCGCTTTATCGATATGACCAAAGTGGATTCAGTTCGTAAGCAGCTAGATTACCAGAACAACTCAGGCATGGTTGATCCAT
CGACTGCAATTAACTTCGGTCGTCAAATTGGTGCCCAGTTCATGCTATACGGCAACCTGTCTAGCATCGTTAAGCAAGAT
GGCAGCACTAAAGACGTTTACTACAAGATGACCATGCGTTTAATGGATCTTGAAACAGGCCTAATCGAATGGTCTGATGA
GAAAGAGATCCGCAAGGTTAAGTCTAAGTCTTTCTTAGGCCTATAA

Upstream 100 bases:

>100_bases
ATCCCATTGAAGTAAAAAGCGGACGTACAACCTTAGTCTGGGTAATTGACACTGGTAATTACACCCGTTTTTATTCAATA
ATCATTTAGCAATCACTTGT

Downstream 100 bases:

>100_bases
TTGTGTAACGGATTTACCCTCCAATAAAAAAGCCAGCAAGTTGCTGGCTTTTTTATTGGCTAAAATTGAGCGTTTTAATG
CTTCTTCAGCCACTCGAAAT

Product: membrane lipoprotein lipid attachment site

Products: NA

Alternate protein names: Membrane Lipoprotein Lipid Attachment Site

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MELTMKQFKVIFILAAVIGLSACQSKVEYGDATEVETVNENFGSTDLQAIAAKMVDSMLTFPPVVAMTANDRPIIFVDKI
KNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDSVRKQLDYQNNSGMVDPSTAINFGRQIGAQFMLYGNLSSIVKQD
GSTKDVYYKMTMRLMDLETGLIEWSDEKEIRKVKSKSFLGL

Sequences:

>Translated_201_residues
MELTMKQFKVIFILAAVIGLSACQSKVEYGDATEVETVNENFGSTDLQAIAAKMVDSMLTFPPVVAMTANDRPIIFVDKI
KNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDSVRKQLDYQNNSGMVDPSTAINFGRQIGAQFMLYGNLSSIVKQD
GSTKDVYYKMTMRLMDLETGLIEWSDEKEIRKVKSKSFLGL
>Mature_201_residues
MELTMKQFKVIFILAAVIGLSACQSKVEYGDATEVETVNENFGSTDLQAIAAKMVDSMLTFPPVVAMTANDRPIIFVDKI
KNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDSVRKQLDYQNNSGMVDPSTAINFGRQIGAQFMLYGNLSSIVKQD
GSTKDVYYKMTMRLMDLETGLIEWSDEKEIRKVKSKSFLGL

Specific function: Unknown

COG id: COG3417

COG function: function code R; Collagen-binding surface adhesin SpaP (antigen I/II family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22536; Mature: 22536

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELTMKQFKVIFILAAVIGLSACQSKVEYGDATEVETVNENFGSTDLQAIAAKMVDSMLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHC
FPPVVAMTANDRPIIFVDKIKNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDSVRK
CCCEEEEECCCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
QLDYQNNSGMVDPSTAINFGRQIGAQFMLYGNLSSIVKQDGSTKDVYYKMTMRLMDLETG
HHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHCC
LIEWSDEKEIRKVKSKSFLGL
CCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MELTMKQFKVIFILAAVIGLSACQSKVEYGDATEVETVNENFGSTDLQAIAAKMVDSMLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHC
FPPVVAMTANDRPIIFVDKIKNKTSEHIDTESVTDSISNKLLRSGKFRFIDMTKVDSVRK
CCCEEEEECCCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
QLDYQNNSGMVDPSTAINFGRQIGAQFMLYGNLSSIVKQDGSTKDVYYKMTMRLMDLETG
HHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHCC
LIEWSDEKEIRKVKSKSFLGL
CCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA