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The map label for this gene is recO

Identifier: 157825871

GI number: 157825871

Start: 729544

End: 730257

Strand: Direct

Name: recO

Synonym: A1C_04050

Alternate gene names: 157825871

Gene position: 729544-730257 (Clockwise)

Preceding gene: 157825870

Following gene: 157825872

Centisome position: 59.26

GC content: 28.29

Gene sequence:

>714_bases
ATGAATATCAAAGATGTAGGAGTAATAATTTCTAAAAAACCTTTGAAAGAAAATACATTTATTATTACGGTTTGTACTAA
AAATCATGGTTTATATTCGGGAGTTGTAAAAGAATCTTCTAAAAAAAGCAAATTTATATATCAGGAAGGGAATATTGTAG
ATTTCCTCTGGCAGGCGAGACTACACGAACATATCGGCATTGCTAAATGTGAACTCATAAAATCTTACACTGGTTATTTG
ATCATAAATAAAACTAAATTATATGCCTTTAATTCCATTATATCTTTAATCAAAGAGTTATGTCATGAAAGAGAAAAGCA
TTCTAATTTTTTTTCATTTCTACTTAACTATTTAGATAATTTATCAAAAAATTTTTGTTTTCGTGATTATATTAATTTTG
AGCTAACTTTACTTGCCAAGACTGGTTATAAGCTTGATCTTACAAAGTGCGGCGTGACTCACGTTACAACTGATTTAACC
TATGTATCACCTAAATCAGCTAGAGCATTATCATATGAAGTAGGGAAGCCTTACAAAGATAAATTATTGATTTTACCAAA
ATTTTTACTTTCAGATGATAGTGAGATTACATTAGAAGAAAAAAGACAAGCTTTAACTCTAACAAACTATTTTTTTAATA
GATATTTATTTCATAATAATAGACAACCTGAAGCACGCCAAACTTTTGTGGGGTATATACTTAATGAGGGCTAA

Upstream 100 bases:

>100_bases
ACACTCTATGTCATACCGTGGTTTGACCACGGTATCCAAAAAAAATTAAAAAAGACTGGATACCGCAGTCAATCCGCGGT
ATGATCACCAAGGAAAAACT

Downstream 100 bases:

>100_bases
GCGGTCTTGTTGTATGGACTGGTTTTGCGTCATTGCGAGGAAATTACGAAGTGATTGACGAAGCAATCCAGTTAAAAATG
CTATTCTATATCATTTCTAA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNIKDVGVIISKKPLKENTFIITVCTKNHGLYSGVVKESSKKSKFIYQEGNIVDFLWQARLHEHIGIAKCELIKSYTGYL
IINKTKLYAFNSIISLIKELCHEREKHSNFFSFLLNYLDNLSKNFCFRDYINFELTLLAKTGYKLDLTKCGVTHVTTDLT
YVSPKSARALSYEVGKPYKDKLLILPKFLLSDDSEITLEEKRQALTLTNYFFNRYLFHNNRQPEARQTFVGYILNEG

Sequences:

>Translated_237_residues
MNIKDVGVIISKKPLKENTFIITVCTKNHGLYSGVVKESSKKSKFIYQEGNIVDFLWQARLHEHIGIAKCELIKSYTGYL
IINKTKLYAFNSIISLIKELCHEREKHSNFFSFLLNYLDNLSKNFCFRDYINFELTLLAKTGYKLDLTKCGVTHVTTDLT
YVSPKSARALSYEVGKPYKDKLLILPKFLLSDDSEITLEEKRQALTLTNYFFNRYLFHNNRQPEARQTFVGYILNEG
>Mature_237_residues
MNIKDVGVIISKKPLKENTFIITVCTKNHGLYSGVVKESSKKSKFIYQEGNIVDFLWQARLHEHIGIAKCELIKSYTGYL
IINKTKLYAFNSIISLIKELCHEREKHSNFFSFLLNYLDNLSKNFCFRDYINFELTLLAKTGYKLDLTKCGVTHVTTDLT
YVSPKSARALSYEVGKPYKDKLLILPKFLLSDDSEITLEEKRQALTLTNYFFNRYLFHNNRQPEARQTFVGYILNEG

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_RICAH (A8GNV8)

Other databases:

- EMBL:   CP000847
- RefSeq:   YP_001493591.1
- ProteinModelPortal:   A8GNV8
- STRING:   A8GNV8
- GeneID:   5645276
- GenomeReviews:   CP000847_GR
- KEGG:   rak:A1C_04050
- NMPDR:   fig|293614.3.peg.759
- eggNOG:   COG1381
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   PRK00085
- BioCyc:   RAKA293614:A1C_04050-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 27524; Mature: 27524

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKDVGVIISKKPLKENTFIITVCTKNHGLYSGVVKESSKKSKFIYQEGNIVDFLWQAR
CCCCCEEEEEECCCCCCCCEEEEEEECCCCEEHHHHHCCCCCCEEEEECCCCHHHHHHHH
LHEHIGIAKCELIKSYTGYLIINKTKLYAFNSIISLIKELCHEREKHSNFFSFLLNYLDN
HHHHCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKNFCFRDYINFELTLLAKTGYKLDLTKCGVTHVTTDLTYVSPKSARALSYEVGKPYKD
HHHCCEEEEECCEEEEEEEECCCEEEEECCCCEEEEECEEEECCCCCCEEEEECCCCCCC
KLLILPKFLLSDDSEITLEEKRQALTLTNYFFNRYLFHNNRQPEARQTFVGYILNEG
CEEEEEHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEECCC
>Mature Secondary Structure
MNIKDVGVIISKKPLKENTFIITVCTKNHGLYSGVVKESSKKSKFIYQEGNIVDFLWQAR
CCCCCEEEEEECCCCCCCCEEEEEEECCCCEEHHHHHCCCCCCEEEEECCCCHHHHHHHH
LHEHIGIAKCELIKSYTGYLIINKTKLYAFNSIISLIKELCHEREKHSNFFSFLLNYLDN
HHHHCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKNFCFRDYINFELTLLAKTGYKLDLTKCGVTHVTTDLTYVSPKSARALSYEVGKPYKD
HHHCCEEEEECCEEEEEEEECCCEEEEECCCCEEEEECEEEECCCCCCEEEEECCCCCCC
KLLILPKFLLSDDSEITLEEKRQALTLTNYFFNRYLFHNNRQPEARQTFVGYILNEG
CEEEEEHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA