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The map label for this gene is radA [H]

Identifier: 157825869

GI number: 157825869

Start: 727815

End: 729155

Strand: Direct

Name: radA [H]

Synonym: A1C_04040

Alternate gene names: 157825869

Gene position: 727815-729155 (Clockwise)

Preceding gene: 157825868

Following gene: 157825870

Centisome position: 59.12

GC content: 37.06

Gene sequence:

>1341_bases
ATGACAAAAGACAAGAAGCATTATATCTGTTCTAACTGTGGAAATACTAGTCCTAAATGGTCAGGGCAGTGCTTTGACTG
CGGTGTATGGGGTTGTATTGTCGAAGAGATAGTAAGTTCAAATAAAGCAATTGTTAAAACAGGTAGCAAACAAGATTTCG
ATAAACTTTCAGGTCACGTAGCCGCACAGTTACACATCCCTACACCTATAGGTGAATTAAATAAAGTCCTAGGGGGCGGT
TTGGTGCTTGGTTCTGCTATATTAATAGGAGGAGACCCTGGCATAGGCAAATCTACTTTGTTACTACAACTAGCAGCCAG
TAATTTTGTATCAAAGATCAATTGCTTATATATAACGGGCGAAGAATCATTAGACCAAATAAAATTAAGGGCAATAAGGC
TAAATCTAACGAACTATAATACCGATATTTTAGCAGCCACTAATGTGGAAGATATTATTGCGAGTATGGAAGCTAATAAA
AATAATATTGATTTGGTAGTGATTGATTCTATTCAAACAATTACCACAAAAGCATTACAATCGCCTCCAGGCACTGTTTC
ACAAATTCGTACATGTGCAAATGAACTTGTTAATTATTCTAAGCAAAACAATATAATTATTTTATTAAGCTGTCACGTAA
CTAAAGACGGTCATCTAGCAGGTCCTAAGATACTTGAGCATTTAGTTGATACCGTGCTATATTTCGAGGGAGATCATAAT
AATCATTTCCGTATTTTACGTTCATATAAAAATCGTTTTGGCGGTGTTGGTGAAATAGGAGTATTTGAGATGAGCGGCAG
CGGGCTTATTGAAGTAACAAATCCGTCTGAACTATTTTTGATGCAGCGAGAGCAGAACGTTATAGGTACGTCTATTTTTG
CAGGAATTGAAGGCTCAAGTCCATTACTTATGGAAGTACAAGCCCTCATAGTACCTTCAAATATGGTAACTCCTAGACGC
TCTGCGGTGGGCTGGGATGTCAATAGATTATCAATGATACTTGCCGTACTTAGTAGTAGGATAGGACTTAATCTTGCTAA
TTATGAAGTATATTTAAGCATAGCTGGAGGACTTAAAATTACCGATCCTGCTTCGGACCTTGCAGTAGCAGCGAGCTTAA
TATCTGCCGCAACAGGCAAACCAGTTCCTGAACAAAGAGTTTTTTTCGGAGAAATAAGCTTATCGGGTGAGATAAGAAAA
ACTGCAAAAGCAGAAACAAGAATAAAAGAAGCCGTAAAGCTTGGATTTAATAAGATTATCTGCTCTAAACTTGAGCATTT
AACGTATGACTTTATATCTTCCGTCTCACATTTAAAGGATTTACAAGAGATAATTAGATGA

Upstream 100 bases:

>100_bases
GATCAGCATTGTTGCATAGTTCGAAAAACCTACTCTATGTGTTATTCCAGCGTAGGCGGGAATAACACAGAACCACGTAA
CAAGACATTCAAAAACAAAC

Downstream 100 bases:

>100_bases
AAACGTATGTTGTAGTAAATTTGGAAGAAGCACGTAATTTTTTATCTAGTATAGAAGCACAGCTGATATTAACAAATAAT
GCCTATAGCGTAAAATATTA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MTKDKKHYICSNCGNTSPKWSGQCFDCGVWGCIVEEIVSSNKAIVKTGSKQDFDKLSGHVAAQLHIPTPIGELNKVLGGG
LVLGSAILIGGDPGIGKSTLLLQLAASNFVSKINCLYITGEESLDQIKLRAIRLNLTNYNTDILAATNVEDIIASMEANK
NNIDLVVIDSIQTITTKALQSPPGTVSQIRTCANELVNYSKQNNIIILLSCHVTKDGHLAGPKILEHLVDTVLYFEGDHN
NHFRILRSYKNRFGGVGEIGVFEMSGSGLIEVTNPSELFLMQREQNVIGTSIFAGIEGSSPLLMEVQALIVPSNMVTPRR
SAVGWDVNRLSMILAVLSSRIGLNLANYEVYLSIAGGLKITDPASDLAVAASLISAATGKPVPEQRVFFGEISLSGEIRK
TAKAETRIKEAVKLGFNKIICSKLEHLTYDFISSVSHLKDLQEIIR

Sequences:

>Translated_446_residues
MTKDKKHYICSNCGNTSPKWSGQCFDCGVWGCIVEEIVSSNKAIVKTGSKQDFDKLSGHVAAQLHIPTPIGELNKVLGGG
LVLGSAILIGGDPGIGKSTLLLQLAASNFVSKINCLYITGEESLDQIKLRAIRLNLTNYNTDILAATNVEDIIASMEANK
NNIDLVVIDSIQTITTKALQSPPGTVSQIRTCANELVNYSKQNNIIILLSCHVTKDGHLAGPKILEHLVDTVLYFEGDHN
NHFRILRSYKNRFGGVGEIGVFEMSGSGLIEVTNPSELFLMQREQNVIGTSIFAGIEGSSPLLMEVQALIVPSNMVTPRR
SAVGWDVNRLSMILAVLSSRIGLNLANYEVYLSIAGGLKITDPASDLAVAASLISAATGKPVPEQRVFFGEISLSGEIRK
TAKAETRIKEAVKLGFNKIICSKLEHLTYDFISSVSHLKDLQEIIR
>Mature_445_residues
TKDKKHYICSNCGNTSPKWSGQCFDCGVWGCIVEEIVSSNKAIVKTGSKQDFDKLSGHVAAQLHIPTPIGELNKVLGGGL
VLGSAILIGGDPGIGKSTLLLQLAASNFVSKINCLYITGEESLDQIKLRAIRLNLTNYNTDILAATNVEDIIASMEANKN
NIDLVVIDSIQTITTKALQSPPGTVSQIRTCANELVNYSKQNNIIILLSCHVTKDGHLAGPKILEHLVDTVLYFEGDHNN
HFRILRSYKNRFGGVGEIGVFEMSGSGLIEVTNPSELFLMQREQNVIGTSIFAGIEGSSPLLMEVQALIVPSNMVTPRRS
AVGWDVNRLSMILAVLSSRIGLNLANYEVYLSIAGGLKITDPASDLAVAASLISAATGKPVPEQRVFFGEISLSGEIRKT
AKAETRIKEAVKLGFNKIICSKLEHLTYDFISSVSHLKDLQEIIR

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=426, Percent_Identity=41.7840375586854, Blast_Score=353, Evalue=1e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 48292; Mature: 48161

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKDKKHYICSNCGNTSPKWSGQCFDCGVWGCIVEEIVSSNKAIVKTGSKQDFDKLSGHV
CCCCCCCEEECCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCE
AAQLHIPTPIGELNKVLGGGLVLGSAILIGGDPGIGKSTLLLQLAASNFVSKINCLYITG
EEEEECCCCHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCEEEEEEEEC
EESLDQIKLRAIRLNLTNYNTDILAATNVEDIIASMEANKNNIDLVVIDSIQTITTKALQ
CCCHHHEEEEEEEEEEECCCCCEEEECCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHC
SPPGTVSQIRTCANELVNYSKQNNIIILLSCHVTKDGHLAGPKILEHLVDTVLYFEGDHN
CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHEEEECCCC
NHFRILRSYKNRFGGVGEIGVFEMSGSGLIEVTNPSELFLMQREQNVIGTSIFAGIEGSS
CHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEEECCCCCHHHHHEECCCCCC
PLLMEVQALIVPSNMVTPRRSAVGWDVNRLSMILAVLSSRIGLNLANYEVYLSIAGGLKI
CHHEEEEEEEECCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCEEECEEEEEEEECCEEE
TDPASDLAVAASLISAATGKPVPEQRVFFGEISLSGEIRKTAKAETRIKEAVKLGFNKII
CCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
CSKLEHLTYDFISSVSHLKDLQEIIR
HHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TKDKKHYICSNCGNTSPKWSGQCFDCGVWGCIVEEIVSSNKAIVKTGSKQDFDKLSGHV
CCCCCCEEECCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCE
AAQLHIPTPIGELNKVLGGGLVLGSAILIGGDPGIGKSTLLLQLAASNFVSKINCLYITG
EEEEECCCCHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCEEEEEEEEC
EESLDQIKLRAIRLNLTNYNTDILAATNVEDIIASMEANKNNIDLVVIDSIQTITTKALQ
CCCHHHEEEEEEEEEEECCCCCEEEECCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHC
SPPGTVSQIRTCANELVNYSKQNNIIILLSCHVTKDGHLAGPKILEHLVDTVLYFEGDHN
CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHEEEECCCC
NHFRILRSYKNRFGGVGEIGVFEMSGSGLIEVTNPSELFLMQREQNVIGTSIFAGIEGSS
CHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEEECCCCCHHHHHEECCCCCC
PLLMEVQALIVPSNMVTPRRSAVGWDVNRLSMILAVLSSRIGLNLANYEVYLSIAGGLKI
CHHEEEEEEEECCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCEEECEEEEEEEECCEEE
TDPASDLAVAASLISAATGKPVPEQRVFFGEISLSGEIRKTAKAETRIKEAVKLGFNKII
CCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
CSKLEHLTYDFISSVSHLKDLQEIIR
HHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA