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The map label for this gene is 157825734

Identifier: 157825734

GI number: 157825734

Start: 597855

End: 599537

Strand: Direct

Name: 157825734

Synonym: A1C_03300

Alternate gene names: NA

Gene position: 597855-599537 (Clockwise)

Preceding gene: 157825727

Following gene: 157825735

Centisome position: 48.56

GC content: 35.59

Gene sequence:

>1683_bases
ATGTCATCATTCAACATCAAAAATCATAAAAATGATCTGCTATTTGTACCGCTAGGAGGATCCAATGAAATAGGTATGAA
TCTTAATCTTTACCATTATAAAGGTAAATGGTTAATGATTGATTGCGGTAGCGGTTTTGCCGATGATTACTTACCTGGTG
TTGATATGATAATTGCCGATAGTCGCTTTATAGAGAAATATAAAAAAGATATAGTAGGTCTGATTTTAACTCATGCTCAC
GAGGATCATTTAGGCGGTGTACAATATTTATGGAGTAGCCTTAAATGTCCTATTTATACTACTACTTTCACAGCAAATTT
TTTAAAAATTCGTTTAAATGAATATGATTTTGCTAAAAATATAAAAATTCATGAAGTGAAATCTGGTAGTAAAATAAGTC
TAGATCCTTTTTCCTTAGAGATGGTGCCACTGACTCACTCGGCTCCTGAAATGCAAGCAATTATGATCCGTACGGATGCA
GGTAATATTTTACATACGGGAGATTGGAAATTTGATAATGATCCTGTACTTGGTCAAAAAGCCGATGAGGAGCTTCTGAA
GTCTTATGGAGATGAAGGTGTTCTTGCACTTGTTTGTGATTCAACTAACGTGTTTAATAAAGGAAGCTCAGGGTCTGAGG
GAGATGTTAGAAAAAGTTTAGTAGATATCATAGCCGGATGCCCTCAAATGGTAGTAGTTTCAACCTTTGCATCTAATTTA
GCACGGCTTGATACAATAATTCATGCTGCAGGACTGGCCGGTAGAAAAGTAGTCTTAACCGGTAGAAGTTTGCATCGTAT
GATGCTTGCAGCTCAAGAAAGCGGCTATTTCAAAGATATTGCTCCTCTAATTAGTGAACGTGATGTTAGTAGATTTAGCA
GAGAAGAATTATTAGTCATTGCTACCGGTTGTCAAGGTGAGCCTATGGCAGCAACTGCAAAACTGGCTAGTAATTCTCAC
CCGTCAATAAGACTTGCTCCTAAGGATACGATGATTTTTTCTTCAAAAATTATTCCTGGTAATGAAAAGAAAATATTCAG
ACTATTTAATATATTTGTTAAAGCTGGTGTAGAAGTGATTACTGAACGTGACCATTTTGTGCATGTTTCAGGACATCCAT
CGATTGACGAGCTGCACAAAATGTATTCTCTAATTAGACCAAATATTTGTATACCTGTTCACGGCGAGCCTATACATATT
CATGAACATGTTAAGCTTGCTAAGAAAAATGGTATAAAACAGGCAGTAGAGGTTGAAAATGGTAGTGTAGTATTGCTTGA
ACCTAATAATGCAACAGTAATTTCAAAAGTTGAAAATGGTTATTTAGCTGTAGATGGTAATTATTTACTCCCTGTAGAAT
CTCCGATTTTCAAAGCTAGAAGACGTATGTGTGAGTCGGGTATCGTTGTAGCATCAGTAGTAATTAATAAAAAAGGGATG
CTTGCTGCAAACCCAATTCTGTCTATGCCTGGTCTGCTTGATCCAAAAGAGGATATGGCGTTGGTTAATCTCATTAAAAA
CGATATTCAAGAACTTGTTACCATTCAAAATAAACAGACTAAAAAAGCATTGTCGGATGAACAAGTAATCGAAGCAATAA
AAAGAACAATTCGTAAAACCTTAAAACAAGAAATTAATAAGTCACCCGTTATAATAGTAAACCTTGAGAAAACTGTGGAG
TAG

Upstream 100 bases:

>100_bases
TTATTTATATTCATTATACGAATTTCTTTTTTAATATATAGACGCTTAACTCATAATAAGTTATAAGAATAAAGTAATAA
AATAAATATTAAGTTAAATT

Downstream 100 bases:

>100_bases
TTAAATTGTGATTGTGAGTAAGTATTATTGTATGGTTCGAGAAGCCCGTTCTATGTCATTCCCACATGGTGTTGTTGCGT
GGATACCCTAGCCATCATTG

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 560; Mature: 559

Protein sequence:

>560_residues
MSSFNIKNHKNDLLFVPLGGSNEIGMNLNLYHYKGKWLMIDCGSGFADDYLPGVDMIIADSRFIEKYKKDIVGLILTHAH
EDHLGGVQYLWSSLKCPIYTTTFTANFLKIRLNEYDFAKNIKIHEVKSGSKISLDPFSLEMVPLTHSAPEMQAIMIRTDA
GNILHTGDWKFDNDPVLGQKADEELLKSYGDEGVLALVCDSTNVFNKGSSGSEGDVRKSLVDIIAGCPQMVVVSTFASNL
ARLDTIIHAAGLAGRKVVLTGRSLHRMMLAAQESGYFKDIAPLISERDVSRFSREELLVIATGCQGEPMAATAKLASNSH
PSIRLAPKDTMIFSSKIIPGNEKKIFRLFNIFVKAGVEVITERDHFVHVSGHPSIDELHKMYSLIRPNICIPVHGEPIHI
HEHVKLAKKNGIKQAVEVENGSVVLLEPNNATVISKVENGYLAVDGNYLLPVESPIFKARRRMCESGIVVASVVINKKGM
LAANPILSMPGLLDPKEDMALVNLIKNDIQELVTIQNKQTKKALSDEQVIEAIKRTIRKTLKQEINKSPVIIVNLEKTVE

Sequences:

>Translated_560_residues
MSSFNIKNHKNDLLFVPLGGSNEIGMNLNLYHYKGKWLMIDCGSGFADDYLPGVDMIIADSRFIEKYKKDIVGLILTHAH
EDHLGGVQYLWSSLKCPIYTTTFTANFLKIRLNEYDFAKNIKIHEVKSGSKISLDPFSLEMVPLTHSAPEMQAIMIRTDA
GNILHTGDWKFDNDPVLGQKADEELLKSYGDEGVLALVCDSTNVFNKGSSGSEGDVRKSLVDIIAGCPQMVVVSTFASNL
ARLDTIIHAAGLAGRKVVLTGRSLHRMMLAAQESGYFKDIAPLISERDVSRFSREELLVIATGCQGEPMAATAKLASNSH
PSIRLAPKDTMIFSSKIIPGNEKKIFRLFNIFVKAGVEVITERDHFVHVSGHPSIDELHKMYSLIRPNICIPVHGEPIHI
HEHVKLAKKNGIKQAVEVENGSVVLLEPNNATVISKVENGYLAVDGNYLLPVESPIFKARRRMCESGIVVASVVINKKGM
LAANPILSMPGLLDPKEDMALVNLIKNDIQELVTIQNKQTKKALSDEQVIEAIKRTIRKTLKQEINKSPVIIVNLEKTVE
>Mature_559_residues
SSFNIKNHKNDLLFVPLGGSNEIGMNLNLYHYKGKWLMIDCGSGFADDYLPGVDMIIADSRFIEKYKKDIVGLILTHAHE
DHLGGVQYLWSSLKCPIYTTTFTANFLKIRLNEYDFAKNIKIHEVKSGSKISLDPFSLEMVPLTHSAPEMQAIMIRTDAG
NILHTGDWKFDNDPVLGQKADEELLKSYGDEGVLALVCDSTNVFNKGSSGSEGDVRKSLVDIIAGCPQMVVVSTFASNLA
RLDTIIHAAGLAGRKVVLTGRSLHRMMLAAQESGYFKDIAPLISERDVSRFSREELLVIATGCQGEPMAATAKLASNSHP
SIRLAPKDTMIFSSKIIPGNEKKIFRLFNIFVKAGVEVITERDHFVHVSGHPSIDELHKMYSLIRPNICIPVHGEPIHIH
EHVKLAKKNGIKQAVEVENGSVVLLEPNNATVISKVENGYLAVDGNYLLPVESPIFKARRRMCESGIVVASVVINKKGML
AANPILSMPGLLDPKEDMALVNLIKNDIQELVTIQNKQTKKALSDEQVIEAIKRTIRKTLKQEINKSPVIIVNLEKTVE

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 61938; Mature: 61806

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSFNIKNHKNDLLFVPLGGSNEIGMNLNLYHYKGKWLMIDCGSGFADDYLPGVDMIIAD
CCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEECEEEEEECCCCCCCCCCCCCCEEEEC
SRFIEKYKKDIVGLILTHAHEDHLGGVQYLWSSLKCPIYTTTFTANFLKIRLNEYDFAKN
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEEEECCCCHHCC
IKIHEVKSGSKISLDPFSLEMVPLTHSAPEMQAIMIRTDAGNILHTGDWKFDNDPVLGQK
CEEEEECCCCEEEECCCEEEEEEECCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCC
ADEELLKSYGDEGVLALVCDSTNVFNKGSSGSEGDVRKSLVDIIAGCPQMVVVSTFASNL
HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
ARLDTIIHAAGLAGRKVVLTGRSLHRMMLAAQESGYFKDIAPLISERDVSRFSREELLVI
HHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE
ATGCQGEPMAATAKLASNSHPSIRLAPKDTMIFSSKIIPGNEKKIFRLFNIFVKAGVEVI
EECCCCCCCHHHHHHHCCCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHEE
TERDHFVHVSGHPSIDELHKMYSLIRPNICIPVHGEPIHIHEHVKLAKKNGIKQAVEVEN
ECCCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCCEEEEHHHHHHHHHCCCCEEEEECC
GSVVLLEPNNATVISKVENGYLAVDGNYLLPVESPIFKARRRMCESGIVVASVVINKKGM
CCEEEECCCCCEEEEEECCCEEEECCCEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCC
LAANPILSMPGLLDPKEDMALVNLIKNDIQELVTIQNKQTKKALSDEQVIEAIKRTIRKT
EEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHH
LKQEINKSPVIIVNLEKTVE
HHHHCCCCCEEEEEECCCCC
>Mature Secondary Structure 
SSFNIKNHKNDLLFVPLGGSNEIGMNLNLYHYKGKWLMIDCGSGFADDYLPGVDMIIAD
CCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEECEEEEEECCCCCCCCCCCCCCEEEEC
SRFIEKYKKDIVGLILTHAHEDHLGGVQYLWSSLKCPIYTTTFTANFLKIRLNEYDFAKN
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEEEECCCCHHCC
IKIHEVKSGSKISLDPFSLEMVPLTHSAPEMQAIMIRTDAGNILHTGDWKFDNDPVLGQK
CEEEEECCCCEEEECCCEEEEEEECCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCC
ADEELLKSYGDEGVLALVCDSTNVFNKGSSGSEGDVRKSLVDIIAGCPQMVVVSTFASNL
HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
ARLDTIIHAAGLAGRKVVLTGRSLHRMMLAAQESGYFKDIAPLISERDVSRFSREELLVI
HHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE
ATGCQGEPMAATAKLASNSHPSIRLAPKDTMIFSSKIIPGNEKKIFRLFNIFVKAGVEVI
EECCCCCCCHHHHHHHCCCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHEE
TERDHFVHVSGHPSIDELHKMYSLIRPNICIPVHGEPIHIHEHVKLAKKNGIKQAVEVEN
ECCCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCCEEEEHHHHHHHHHCCCCEEEEECC
GSVVLLEPNNATVISKVENGYLAVDGNYLLPVESPIFKARRRMCESGIVVASVVINKKGM
CCEEEECCCCCEEEEEECCCEEEECCCEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCC
LAANPILSMPGLLDPKEDMALVNLIKNDIQELVTIQNKQTKKALSDEQVIEAIKRTIRKT
EEECCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHH
LKQEINKSPVIIVNLEKTVE
HHHHCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]