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The map label for this gene is rbfA

Identifier: 157825722

GI number: 157825722

Start: 591815

End: 592204

Strand: Reverse

Name: rbfA

Synonym: A1C_03240

Alternate gene names: 157825722

Gene position: 592204-591815 (Counterclockwise)

Preceding gene: 157825723

Following gene: 157825721

Centisome position: 48.11

GC content: 26.92

Gene sequence:

>390_bases
ATGAAAAAATTAACCAAAACTAATTCTCATAGACAACAAAAATTAGCAAGCATTATAAATGAAGCATTAATCGAAATTCT
AAGACGTGGTAAAATGCTGGATAGCAGACTTTTTAATTGTCCGCTCACTATTACGAAAGTTATAGTTACTGCTGATCTAA
AAATAGCTAATTGTTATTTCTTGCCTTTTAATACTAAACTAACAATAAATGAAGTTATGAATGCATTAAATAATTCTAAA
AAAGCTATCAGAAATTTTATTACTAATAAAATAAATGTGAAATTCTCACCTGATATAAGATTTCATTACGATCACGGATT
TGATAATGCTATAAAAGTGGAAGAGTTGCTAAAAAATATACAAGTTCTAGGGGATAAACTCAATCATTGA

Upstream 100 bases:

>100_bases
ATTCTCTGGTTTTGTTAAAACAAAATTTCTAAAATTTTTAGTGATTGGTTGTTTGGCAAAAGTATGCTATTATGCTCTAG
AATTGTATATATTTTAACTT

Downstream 100 bases:

>100_bases
AAATAATAATTATCTGTTATACTAAACACGCTTAAAAATTAAACTTTAATACAACAGCCACCTAGCATAAATGGACTAAA
GGCTATAAATGTTTTGCAAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFNCPLTITKVIVTADLKIANCYFLPFNTKLTINEVMNALNNSK
KAIRNFITNKINVKFSPDIRFHYDHGFDNAIKVEELLKNIQVLGDKLNH

Sequences:

>Translated_129_residues
MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFNCPLTITKVIVTADLKIANCYFLPFNTKLTINEVMNALNNSK
KAIRNFITNKINVKFSPDIRFHYDHGFDNAIKVEELLKNIQVLGDKLNH
>Mature_129_residues
MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFNCPLTITKVIVTADLKIANCYFLPFNTKLTINEVMNALNNSK
KAIRNFITNKINVKFSPDIRFHYDHGFDNAIKVEELLKNIQVLGDKLNH

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_RICAH (A8GNF9)

Other databases:

- EMBL:   CP000847
- RefSeq:   YP_001493442.1
- ProteinModelPortal:   A8GNF9
- STRING:   A8GNF9
- GeneID:   5645226
- GenomeReviews:   CP000847_GR
- KEGG:   rak:A1C_03240
- NMPDR:   fig|293614.3.peg.608
- eggNOG:   COG0858
- HOGENOM:   HBG586444
- OMA:   KINMKFS
- ProtClustDB:   PRK00521
- BioCyc:   RAKA293614:A1C_03240-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14896; Mature: 14896

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFNCPLTITKVIVTADLKIANCYF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHCCCEEEEEEE
LPFNTKLTINEVMNALNNSKKAIRNFITNKINVKFSPDIRFHYDHGFDNAIKVEELLKNI
ECCCCCEEHHHHHHHHCCHHHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHH
QVLGDKLNH
HHHHHHCCC
>Mature Secondary Structure
MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFNCPLTITKVIVTADLKIANCYF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHCCCEEEEEEE
LPFNTKLTINEVMNALNNSKKAIRNFITNKINVKFSPDIRFHYDHGFDNAIKVEELLKNI
ECCCCCEEHHHHHHHHCCHHHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHH
QVLGDKLNH
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA