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The map label for this gene is yebA [H]

Identifier: 157825685

GI number: 157825685

Start: 551338

End: 552672

Strand: Direct

Name: yebA [H]

Synonym: A1C_03035

Alternate gene names: 157825685

Gene position: 551338-552672 (Clockwise)

Preceding gene: 157825679

Following gene: 157825686

Centisome position: 44.79

GC content: 31.01

Gene sequence:

>1335_bases
ATGAATGATACCGCACAATCTTATGATTTTAATGGCGTATTGCCATCATCTTTTATTAGTGCACATCTTAGGAAAGTTCT
CATCTCTTCGTCCTTATTATTATTTATAGGATTAGTTTTTTTCGTCTCTTTTGCCGTTAATAATTATGTTAACAACACTT
TATCCATCACTTTAGTACAACCTGATAGTGATGAAGAAGAAACAATTTCATTTAAAGAAGTAGTAGTAAAAAAAGGCGAT
ACTATAAAGTCAATTTTAATAGAACAACATATCCCTAAAAATGAAATAGAAAAAATTGTCAGTTTAATAAAAGAGAGAAA
ATTATCCTCTGCTCTTAAAATAGGTCAGCAAATTACTTTTGAGTATGAAACAAAAATTACTGAAAACGAGCATGAAGATC
TAACATCAGAGGTAAAATTCTTAAATAAAATCATTATAATTGTGGATAAGCTCAAGACTATTCAATTAATAAGAGAAAAC
GATAATTTCAAAGTTGAAGAAATTATAGTACCTTTAACTAAAAAAATTGCTAAATCATCGGTAAATATTGAATCAAATTT
TATGTCAGCTCTTAAAAAACTGGGTTTATCAAATAATAGCATAATAGAGCTGATTAATGCTTATGCTTATCAAATCGATT
TTCAACGTCAAATAAAAAGTGGTGATACCGCAACCGTAATAATGGAACAATACGTAACGGAAGACGGTAAATTTTCTCAC
CACGGTAAAATCCTGTATGTTTCATTAAATCTTTCAGGAAAAGAATATAATATATATCGTTATTCCCATGATAATAATGC
AAATAATCATGCATTTTTTTCAGAAGATGGTAAAAGCGTAAAAAGAAGCTTACTTAAAACTCCGTTAAAAATTATAAAAG
TTTCTTCACATTACGGTAATAGAAAACATCCGATACTCGGTTATACTAAAATGCATAAGGGAGTTGACTTTGCAGCTCCA
ACCGGTACGCCTATATATTCCGCAGGAAACGGAGTTATAACGGAGATGGGTTGGAAGTCGGGTTATGGAAAATTTATTCA
GGTAAAACATAGCGGTACGTTATCTACTGCTTATGCTCATGCTTCAAATTTTGCAAAAAATTTAAAAGTGGGAAGCGTAG
TAAAACAGGGGCAGGTTATAGCATATGTTGGGAGTACCGGTAGAGCTAGCGGATCACATTTGCATTATGAAGTTAAAATT
GACGGCAAACATGTTAATCCTATGTCGGTTAAAACAACACCTGGTGTAGAGTTAAACGGAAGAAATTTAGAGAAATTCAA
ACAATTTAAGAAAGAAATAAAAGCTTTAAATGTTAAGCTTGATAAGGAGTTGTAA

Upstream 100 bases:

>100_bases
ATAAAACAAAATTTTACAATTATCTATTGTAATTTGTTTGTATATAATTCATATTATTAGTAATGAAAAATTGATTCAAA
TAATCTTCAGAGCAATTTTA

Downstream 100 bases:

>100_bases
ACTGATAAAGCAGCATAGGTTTCATTATAGGATAGCCGTCATTGCAAGCGACTGAAGGTGTTGTTGTGTGGATAGTCTTA
TGTTATTTCGGCGTGGAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MNDTAQSYDFNGVLPSSFISAHLRKVLISSSLLLFIGLVFFVSFAVNNYVNNTLSITLVQPDSDEEETISFKEVVVKKGD
TIKSILIEQHIPKNEIEKIVSLIKERKLSSALKIGQQITFEYETKITENEHEDLTSEVKFLNKIIIIVDKLKTIQLIREN
DNFKVEEIIVPLTKKIAKSSVNIESNFMSALKKLGLSNNSIIELINAYAYQIDFQRQIKSGDTATVIMEQYVTEDGKFSH
HGKILYVSLNLSGKEYNIYRYSHDNNANNHAFFSEDGKSVKRSLLKTPLKIIKVSSHYGNRKHPILGYTKMHKGVDFAAP
TGTPIYSAGNGVITEMGWKSGYGKFIQVKHSGTLSTAYAHASNFAKNLKVGSVVKQGQVIAYVGSTGRASGSHLHYEVKI
DGKHVNPMSVKTTPGVELNGRNLEKFKQFKKEIKALNVKLDKEL

Sequences:

>Translated_444_residues
MNDTAQSYDFNGVLPSSFISAHLRKVLISSSLLLFIGLVFFVSFAVNNYVNNTLSITLVQPDSDEEETISFKEVVVKKGD
TIKSILIEQHIPKNEIEKIVSLIKERKLSSALKIGQQITFEYETKITENEHEDLTSEVKFLNKIIIIVDKLKTIQLIREN
DNFKVEEIIVPLTKKIAKSSVNIESNFMSALKKLGLSNNSIIELINAYAYQIDFQRQIKSGDTATVIMEQYVTEDGKFSH
HGKILYVSLNLSGKEYNIYRYSHDNNANNHAFFSEDGKSVKRSLLKTPLKIIKVSSHYGNRKHPILGYTKMHKGVDFAAP
TGTPIYSAGNGVITEMGWKSGYGKFIQVKHSGTLSTAYAHASNFAKNLKVGSVVKQGQVIAYVGSTGRASGSHLHYEVKI
DGKHVNPMSVKTTPGVELNGRNLEKFKQFKKEIKALNVKLDKEL
>Mature_444_residues
MNDTAQSYDFNGVLPSSFISAHLRKVLISSSLLLFIGLVFFVSFAVNNYVNNTLSITLVQPDSDEEETISFKEVVVKKGD
TIKSILIEQHIPKNEIEKIVSLIKERKLSSALKIGQQITFEYETKITENEHEDLTSEVKFLNKIIIIVDKLKTIQLIREN
DNFKVEEIIVPLTKKIAKSSVNIESNFMSALKKLGLSNNSIIELINAYAYQIDFQRQIKSGDTATVIMEQYVTEDGKFSH
HGKILYVSLNLSGKEYNIYRYSHDNNANNHAFFSEDGKSVKRSLLKTPLKIIKVSSHYGNRKHPILGYTKMHKGVDFAAP
TGTPIYSAGNGVITEMGWKSGYGKFIQVKHSGTLSTAYAHASNFAKNLKVGSVVKQGQVIAYVGSTGRASGSHLHYEVKI
DGKHVNPMSVKTTPGVELNGRNLEKFKQFKKEIKALNVKLDKEL

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=366, Percent_Identity=31.4207650273224, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI87082174, Length=98, Percent_Identity=42.8571428571429, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49711; Mature: 49711

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDTAQSYDFNGVLPSSFISAHLRKVLISSSLLLFIGLVFFVSFAVNNYVNNTLSITLVQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
PDSDEEETISFKEVVVKKGDTIKSILIEQHIPKNEIEKIVSLIKERKLSSALKIGQQITF
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEE
EYETKITENEHEDLTSEVKFLNKIIIIVDKLKTIQLIRENDNFKVEEIIVPLTKKIAKSS
EEECCCCCCHHHHHHHHHHHHHHHHHEEECHHEEEEEECCCCCCHHHHHHHHHHHHHHHC
VNIESNFMSALKKLGLSNNSIIELINAYAYQIDFQRQIKSGDTATVIMEQYVTEDGKFSH
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEHHHHHCCCCHHEEHHHHHHCCCCCCCC
HGKILYVSLNLSGKEYNIYRYSHDNNANNHAFFSEDGKSVKRSLLKTPLKIIKVSSHYGN
CCEEEEEEEECCCCEEEEEEEECCCCCCCCEEECCCHHHHHHHHHHCCHHEEEEECCCCC
RKHPILGYTKMHKGVDFAAPTGTPIYSAGNGVITEMGWKSGYGKFIQVKHSGTLSTAYAH
CCCCEECHHHHHCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCEEEEECCCCCHHHHHH
ASNFAKNLKVGSVVKQGQVIAYVGSTGRASGSHLHYEVKIDGKHVNPMSVKTTPGVELNG
HHHHHHCCCHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCEECC
RNLEKFKQFKKEIKALNVKLDKEL
CCHHHHHHHHHHHHHHCCEECCCC
>Mature Secondary Structure
MNDTAQSYDFNGVLPSSFISAHLRKVLISSSLLLFIGLVFFVSFAVNNYVNNTLSITLVQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
PDSDEEETISFKEVVVKKGDTIKSILIEQHIPKNEIEKIVSLIKERKLSSALKIGQQITF
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEE
EYETKITENEHEDLTSEVKFLNKIIIIVDKLKTIQLIRENDNFKVEEIIVPLTKKIAKSS
EEECCCCCCHHHHHHHHHHHHHHHHHEEECHHEEEEEECCCCCCHHHHHHHHHHHHHHHC
VNIESNFMSALKKLGLSNNSIIELINAYAYQIDFQRQIKSGDTATVIMEQYVTEDGKFSH
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEHHHHHCCCCHHEEHHHHHHCCCCCCCC
HGKILYVSLNLSGKEYNIYRYSHDNNANNHAFFSEDGKSVKRSLLKTPLKIIKVSSHYGN
CCEEEEEEEECCCCEEEEEEEECCCCCCCCEEECCCHHHHHHHHHHCCHHEEEEECCCCC
RKHPILGYTKMHKGVDFAAPTGTPIYSAGNGVITEMGWKSGYGKFIQVKHSGTLSTAYAH
CCCCEECHHHHHCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCEEEEECCCCCHHHHHH
ASNFAKNLKVGSVVKQGQVIAYVGSTGRASGSHLHYEVKIDGKHVNPMSVKTTPGVELNG
HHHHHHCCCHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCEECC
RNLEKFKQFKKEIKALNVKLDKEL
CCHHHHHHHHHHHHHHCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]