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The map label for this gene is capD

Identifier: 157825584

GI number: 157825584

Start: 453327

End: 454352

Strand: Direct

Name: capD

Synonym: A1C_02485

Alternate gene names: 157825584

Gene position: 453327-454352 (Clockwise)

Preceding gene: 157825583

Following gene: 157825585

Centisome position: 36.82

GC content: 34.7

Gene sequence:

>1026_bases
ATGTTTGTAGATAAAACTTTAATGATTACAGGAGGCACTGGTTCGTTTGGTAATGCGGTGCTTTCTCGTTTTCTTAAATC
CGATATTATTAACGATATTAAAGAAATTAGAATTTTCAGTAGAGACGAAAAAAAGCAAGAAGATATGCGTATTGCTTTAA
GTAATCCGAAACTTAAATTCTATATCGGAGATGTGCGTAATTATAAAAGTATTGATGAGGCGATGCGTGGTGTAGATTAT
GTATTTCATGCTGCTGCTTTAAAGCAAGTTCCGACCTGTGAATTTTATCCGATGGAAGCAATCAATACTAACGTTTTAGG
TGCTGAAAATGTGTTAAGTGCTGCTATTAATAATAAAGTAGCAAAAGTTATTGTATTGAGTACCGATAAGGCTGTATATC
CAATTAATGCAATGGGATTATCTAAGGCATTAATGGAAAAGTTATCAATAGCAAAAGCTCGTATGTGTAGCCAAGGTGAA
ACTGTGCTTTGCGTTACTAGATACGGTAATGTTATGGCATCTCGCGGTTCAGTGATTCCTCTTTTTATTAATCAAATAAA
ACAGGGTAAGGAATTAACTATTACCGAGCCTTCAATGACACGTTTTTTAATGTCGCTTGTAGATTCCGTAGATTTGGTTT
TATATGCGTTTGAGCATGGTCGTCAGGGTGATATTTTTGTACAAAAATCTCCAGCAAGTACAATTGAGATACTTGCAAAA
GCGTTACAAGAGATATTCGGTAGTAAAAACAAAATACGTTTTATCGGTACACGTCATGGAGAGAAGCATTATGAATCGTT
AGTATCATCCGAAGATATGGCAAAGGCAGATGATTTAGGTGGTTATTACCGTATTCCTATGGATGGGCGTGATCTTAATT
ATGCAAAATATTTTGTTGAAGGCGAAAAGAAAGTGGCACTTTTAGAGGATTACACTTCGCATAATACAAAACGTTTAAAT
TTAGAAGAAGTAAAAAAGTTGTTGCTGACTCTTGATTACATACAAGAGGAGCTAAAAAATGCTTAA

Upstream 100 bases:

>100_bases
ACTGGATTGCCGCTTCAATGCTACGCACCTCCTAGCAATGACTGAGAAATCAAACTGTAATGATGGGGTAAATAATAACA
AAATAGGTACTAAATATATA

Downstream 100 bases:

>100_bases
GGTAATGACTATTGTCGGTACTCGTCCTGAACTGATTAAACTATGCTGCGTGATTTCCGAGTTTGATAAATATACTAATC
ATATCCTAGTTCACACCGGT

Product: CapD protein

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MFVDKTLMITGGTGSFGNAVLSRFLKSDIINDIKEIRIFSRDEKKQEDMRIALSNPKLKFYIGDVRNYKSIDEAMRGVDY
VFHAAALKQVPTCEFYPMEAINTNVLGAENVLSAAINNKVAKVIVLSTDKAVYPINAMGLSKALMEKLSIAKARMCSQGE
TVLCVTRYGNVMASRGSVIPLFINQIKQGKELTITEPSMTRFLMSLVDSVDLVLYAFEHGRQGDIFVQKSPASTIEILAK
ALQEIFGSKNKIRFIGTRHGEKHYESLVSSEDMAKADDLGGYYRIPMDGRDLNYAKYFVEGEKKVALLEDYTSHNTKRLN
LEEVKKLLLTLDYIQEELKNA

Sequences:

>Translated_341_residues
MFVDKTLMITGGTGSFGNAVLSRFLKSDIINDIKEIRIFSRDEKKQEDMRIALSNPKLKFYIGDVRNYKSIDEAMRGVDY
VFHAAALKQVPTCEFYPMEAINTNVLGAENVLSAAINNKVAKVIVLSTDKAVYPINAMGLSKALMEKLSIAKARMCSQGE
TVLCVTRYGNVMASRGSVIPLFINQIKQGKELTITEPSMTRFLMSLVDSVDLVLYAFEHGRQGDIFVQKSPASTIEILAK
ALQEIFGSKNKIRFIGTRHGEKHYESLVSSEDMAKADDLGGYYRIPMDGRDLNYAKYFVEGEKKVALLEDYTSHNTKRLN
LEEVKKLLLTLDYIQEELKNA
>Mature_341_residues
MFVDKTLMITGGTGSFGNAVLSRFLKSDIINDIKEIRIFSRDEKKQEDMRIALSNPKLKFYIGDVRNYKSIDEAMRGVDY
VFHAAALKQVPTCEFYPMEAINTNVLGAENVLSAAINNKVAKVIVLSTDKAVYPINAMGLSKALMEKLSIAKARMCSQGE
TVLCVTRYGNVMASRGSVIPLFINQIKQGKELTITEPSMTRFLMSLVDSVDLVLYAFEHGRQGDIFVQKSPASTIEILAK
ALQEIFGSKNKIRFIGTRHGEKHYESLVSSEDMAKADDLGGYYRIPMDGRDLNYAKYFVEGEKKVALLEDYTSHNTKRLN
LEEVKKLLLTLDYIQEELKNA

Specific function: Epimerizes UDP-galactose to UDP-glucose

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAPD_RICAH (A8GN21)

Other databases:

- EMBL:   CP000847
- RefSeq:   YP_001493304.1
- ProteinModelPortal:   A8GN21
- SMR:   A8GN21
- STRING:   A8GN21
- GeneID:   5645868
- GenomeReviews:   CP000847_GR
- KEGG:   rak:A1C_02485
- NMPDR:   fig|293614.3.peg.462
- eggNOG:   COG1086
- HOGENOM:   HBG429349
- OMA:   INAMGLS
- ProtClustDB:   CLSK870330
- BioCyc:   RAKA293614:A1C_02485-MONOMER
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR003869
- InterPro:   IPR013692
- Gene3D:   G3DSA:3.40.50.720
- PANTHER:   PTHR10366:SF23

Pfam domain/function: PF08485 Polysacc_syn_2C; PF02719 Polysacc_synt_2

EC number: =5.1.3.2

Molecular weight: Translated: 38286; Mature: 38286

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDKTLMITGGTGSFGNAVLSRFLKSDIINDIKEIRIFSRDEKKQEDMRIALSNPKLKF
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCEEEE
YIGDVRNYKSIDEAMRGVDYVFHAAALKQVPTCEFYPMEAINTNVLGAENVLSAAINNKV
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCE
AKVIVLSTDKAVYPINAMGLSKALMEKLSIAKARMCSQGETVLCVTRYGNVMASRGSVIP
EEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHH
LFINQIKQGKELTITEPSMTRFLMSLVDSVDLVLYAFEHGRQGDIFVQKSPASTIEILAK
HHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHH
ALQEIFGSKNKIRFIGTRHGEKHYESLVSSEDMAKADDLGGYYRIPMDGRDLNYAKYFVE
HHHHHHCCCCEEEEEECCCCHHHHHHHHCCCHHHHHHCCCCEEECCCCCCCCCCEEEEEC
GEKKVALLEDYTSHNTKRLNLEEVKKLLLTLDYIQEELKNA
CCCEEEEEEHHHCCCCEEECHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFVDKTLMITGGTGSFGNAVLSRFLKSDIINDIKEIRIFSRDEKKQEDMRIALSNPKLKF
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCEEEE
YIGDVRNYKSIDEAMRGVDYVFHAAALKQVPTCEFYPMEAINTNVLGAENVLSAAINNKV
EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCE
AKVIVLSTDKAVYPINAMGLSKALMEKLSIAKARMCSQGETVLCVTRYGNVMASRGSVIP
EEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHH
LFINQIKQGKELTITEPSMTRFLMSLVDSVDLVLYAFEHGRQGDIFVQKSPASTIEILAK
HHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHH
ALQEIFGSKNKIRFIGTRHGEKHYESLVSSEDMAKADDLGGYYRIPMDGRDLNYAKYFVE
HHHHHHCCCCEEEEEECCCCHHHHHHHHCCCHHHHHHCCCCEEECCCCCCCCCCEEEEEC
GEKKVALLEDYTSHNTKRLNLEEVKKLLLTLDYIQEELKNA
CCCEEEEEEHHHCCCCEEECHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA