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The map label for this gene is cycM [H]

Identifier: 157825467

GI number: 157825467

Start: 342546

End: 343073

Strand: Reverse

Name: cycM [H]

Synonym: A1C_01840

Alternate gene names: 157825467

Gene position: 343073-342546 (Counterclockwise)

Preceding gene: 157825469

Following gene: 157825466

Centisome position: 27.87

GC content: 38.45

Gene sequence:

>528_bases
ATGTCTGGAAAAGAATTAAATAAAATTGTTGCAGCCATCCTATCTGCTAGTTTAATTGCTATGATGGTTGGATTTGTTGC
AAATATATTATATAAACCCACTCTAGAGTTACAGCATCGCGGCTACAGCGTTGCGGTTCAAGCATCATCAGACAATCAAG
ATACTACCGCACTAGAGCAGGCACCAATCAATATACCGCAATTGATGAAAACAGCGAATGCCAATAACGGTCGTGAAATA
GCCAAGAAATGTTTAATGTGTCATTCTCTTGATAAAGACGGTCCAAATAAACTAGGACCGCATCTTTGGGATGTAGCAGG
CAGACCAAAAGGAAGCATAGCAGACTATAAATATTCCCCTGCTCTATCAAAACTCAGTGGCGTATGGGATGATGATAGTT
TATTTGCTTTCTTACATAAACCAAGTAGCTATGCACCAGGAACTAAAATGTCCTTTGCCGGTATCTCAAGACCACGAGAC
ATAGCTGACGTCATATTATTTTTAAAAACTTATGTTCATGATAAATAA

Upstream 100 bases:

>100_bases
CAAAGAACAAATATTTTTATAAATTTTTCTTTTATTTATTTAATGCACTTCTCTTACAACTTAAATTATAGTATAAATTC
TAATAAAAAAAACAAAATAA

Downstream 100 bases:

>100_bases
TTACCTCACCGAAATATGGTTAATAATCGGCATAATTTGTGTAGTTGTTGAATTTTTTGCAGTTCCAAATATTGGATTTT
TATTCTTTGGGCTTGGAGCA

Product: cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSGKELNKIVAAILSASLIAMMVGFVANILYKPTLELQHRGYSVAVQASSDNQDTTALEQAPINIPQLMKTANANNGREI
AKKCLMCHSLDKDGPNKLGPHLWDVAGRPKGSIADYKYSPALSKLSGVWDDDSLFAFLHKPSSYAPGTKMSFAGISRPRD
IADVILFLKTYVHDK

Sequences:

>Translated_175_residues
MSGKELNKIVAAILSASLIAMMVGFVANILYKPTLELQHRGYSVAVQASSDNQDTTALEQAPINIPQLMKTANANNGREI
AKKCLMCHSLDKDGPNKLGPHLWDVAGRPKGSIADYKYSPALSKLSGVWDDDSLFAFLHKPSSYAPGTKMSFAGISRPRD
IADVILFLKTYVHDK
>Mature_174_residues
SGKELNKIVAAILSASLIAMMVGFVANILYKPTLELQHRGYSVAVQASSDNQDTTALEQAPINIPQLMKTANANNGREIA
KKCLMCHSLDKDGPNKLGPHLWDVAGRPKGSIADYKYSPALSKLSGVWDDDSLFAFLHKPSSYAPGTKMSFAGISRPRDI
ADVILFLKTYVHDK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=87, Percent_Identity=40.2298850574713, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17539604, Length=96, Percent_Identity=37.5, Blast_Score=74, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17566554, Length=100, Percent_Identity=39, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322508, Length=102, Percent_Identity=38.2352941176471, Blast_Score=87, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6320796, Length=101, Percent_Identity=37.6237623762376, Blast_Score=86, Evalue=3e-18,
Organism=Drosophila melanogaster, GI17137204, Length=103, Percent_Identity=41.747572815534, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI17137228, Length=91, Percent_Identity=37.3626373626374, Blast_Score=84, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 19062; Mature: 18931

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKELNKIVAAILSASLIAMMVGFVANILYKPTLELQHRGYSVAVQASSDNQDTTALEQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEECCCCCHHHHHHH
APINIPQLMKTANANNGREIAKKCLMCHSLDKDGPNKLGPHLWDVAGRPKGSIADYKYSP
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCH
ALSKLSGVWDDDSLFAFLHKPSSYAPGTKMSFAGISRPRDIADVILFLKTYVHDK
HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGKELNKIVAAILSASLIAMMVGFVANILYKPTLELQHRGYSVAVQASSDNQDTTALEQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEECCCCCHHHHHHH
APINIPQLMKTANANNGREIAKKCLMCHSLDKDGPNKLGPHLWDVAGRPKGSIADYKYSP
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCH
ALSKLSGVWDDDSLFAFLHKPSSYAPGTKMSFAGISRPRDIADVILFLKTYVHDK
HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]