| Definition | Rickettsia akari str. Hartford, complete genome. |
|---|---|
| Accession | NC_009881 |
| Length | 1,231,060 |
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The map label for this gene is pbpC [H]
Identifier: 157825388
GI number: 157825388
Start: 264225
End: 266579
Strand: Reverse
Name: pbpC [H]
Synonym: A1C_01410
Alternate gene names: 157825388
Gene position: 266579-264225 (Counterclockwise)
Preceding gene: 157825397
Following gene: 157825387
Centisome position: 21.65
GC content: 33.25
Gene sequence:
>2355_bases TTGACTATCAAAACCAAATTACTTTTTATTACAATCAGCGGCATTATAATATTATATTTTGCTATTCCTCCTGCTCCATT GCTTAAAGACATAAGCTTCTCACAAAGAGTATTTGACCGAAGCGGCGAGTTAATGCGTATTTCGCTTTCTAAAGACGATA AATATAGAATATTCACTCCTATACGTGAAATACCAGCAAGTTTTATAGAAGCAGTATTGTTATATGAAGATAGGCATTTT TATAAACATTGCGGCATTAACCCAATTTCTTTAGCCAAAGCTTTTTATTATACTTATTTACAGAATAATCGTAAAATAGG CGGCTCTACTATAACAATGCAAATAGCACGTTTAAGATATGGGATAAACTCTTCTACTATTCTTGGTAAAATCCATCAAA TCATTAAAGCTATTCATGTAGAGCTACATTATTCAAAAAATGAAATCCTAGAAGCTTATCTAAACCTAGTGCCTTACGGT AGTAATATTGAAGGGATAACAGCCAGCAGTTATATTTATTTCAATCGTGACCTAAAAGATTTAAATTTGCTCGATATTCT AAGCCTTGCAGTAATCCCACAAAATCCTCTTAAAAGAGGCGGGAATGATATGAATATTTTTCAAGCGCGTAAATATCTAT TTACTGAGTGGCTAACTACTCACCCACAAGATATTATTTATAATAAGTTAATTAGTTTGCCGATTAAATTTAATCAAAAT AAAAATCTTCCTTTTATAGCACCGCATTTCACTTTAGATATCCTGGCAAATAATGATAGTCCTATTATACGTACTACTAT AGATAAGAATTTGCAAACTACTATAGAAAAGCAGGTGCAGCTATATATTAATAACCTGAAAAAATACGGCATTAATAATG CTTCCGTAATTCTTATTGATTTTACTACTATGGAAGTGCTTGCAAGCGTTGGTTCAGGTGATTTTTTTAATAACGATATT TGCGGACAGATTAACGGCACTAAAAGCCATCGATCTCCAGGCTCCGCTTTAAAACCATTTGTCTATGCACTTAGTTTTGA TCAATCGCTAATACATCCGTTAACTTTACTAAAGGATACACCTACTTACTACGATCATTATAAACCGGAAAATTTTGATA GCAGATTTACAGGAGGATTAAGTGTCAGAGAATCATTAATAAGGAGCCGCAACGTACCTGTAATATTTCTGGCGTCTAAG TTAAAAAATCCGAATTTTTATGAGTTCTTACAACAAGCAAAAATTAGTGGCTTACAAAAACCTGAACATTACGGCTTATC TATAGTACTCGGCACAGCAGAAATTACTCTTGAAGAGTTAACTACTCTTTATGCTATGCTTGCTAATTTCGGTACTTATA AACCGCTTAGGAAAATGCTTTCTACGTCATTACACGGAGAAGCACAACGAGGGCGCGGCACTCTAGAACAAAATAATACA AACTCTACTAGATTGCCACGCTCCGAGCAAATGCTCGCAACAACAATGATATCCCCCGAAGCAAGCTATTTAACTCTTGA TATTATAAAAGATACAACTCGTCCTATTACCTATAACAATACAAAGCATAACTTACCGATTTATTGGAAAACAGGTACTT CTAGCTCATTTAGAGACGCACTGAGTATAGGAATATTCAGCAAATACGTACTTGCCGTTTGGGTTGGAGATTTCAAAGGG CAAACTCACGGAACATTTACAGGTAATATTTCTGCGGCCCCTTTATTCTTTAATATTATAGAATCAATAGCCGAGCCAAA TAAAGATAAGGATTTAATCCTTTCAAAAATTAATAAACTAAATATTACTAAAGTAAAAGTTTGTGCAGATACGGGAGATA TCGATAACGATATGTGTCCACTTAAAGCAGAATCCTTATTTATTAAAGGCAAATCACCGATAAAACAATCCGGTATTTAT AGAAAAATGTTGATAGATTTAAAAACCGGTATGCCTGCTTGCCACTTTATTCAAGGACAAACAGAATATAAAACCGTAAA TTTATGGCCGGCAGATATGATTTCGGTTTACCAAAAAGCAGGAATACATATATTACCGAAACCGATACCCACAAACCATT GCAATAGGTTGATAAATTGGCATCATCAGAAACCTAAAATTATATATCCGTTAAGAAATTCCATACATTCAATTAAAGAT AGTGATAATATTACTTTTAGTGCGATTAGCGATAATAAAACCAATAACATTTTTTGGTTTGTAGATAATGAATTAATAGC AACCGCAAAATCAAACGAACCTGTAATATGGAAAGCAAAAACCGGTGAATTTATTATTAGAGCTATCAGTGATAGCGGAG AAAACGACAGTATAAAAATTTATATTAAAGAATAA
Upstream 100 bases:
>100_bases TACATATTTGATAAAATAAGTATATAAAAATAAGTTTTTTATATACTTTACTGGCTTTCCCGCCTACGCGGGAATGACAT TAAACTATAAGGTATATACT
Downstream 100 bases:
>100_bases ATTAGTGGTTATATATGAAATCTACAATGCCCACAGAACTTGATATTAAATCTTTAACATAAGAAGAAACTGCTCTTGAT TCTTTAAAAAAGAAAATATT
Product: bifunctional penicillin-binding protein 1C
Products: NA
Alternate protein names: PBP-1c; PBP1c; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Transpeptidase-like module [H]
Number of amino acids: Translated: 784; Mature: 783
Protein sequence:
>784_residues MTIKTKLLFITISGIIILYFAIPPAPLLKDISFSQRVFDRSGELMRISLSKDDKYRIFTPIREIPASFIEAVLLYEDRHF YKHCGINPISLAKAFYYTYLQNNRKIGGSTITMQIARLRYGINSSTILGKIHQIIKAIHVELHYSKNEILEAYLNLVPYG SNIEGITASSYIYFNRDLKDLNLLDILSLAVIPQNPLKRGGNDMNIFQARKYLFTEWLTTHPQDIIYNKLISLPIKFNQN KNLPFIAPHFTLDILANNDSPIIRTTIDKNLQTTIEKQVQLYINNLKKYGINNASVILIDFTTMEVLASVGSGDFFNNDI CGQINGTKSHRSPGSALKPFVYALSFDQSLIHPLTLLKDTPTYYDHYKPENFDSRFTGGLSVRESLIRSRNVPVIFLASK LKNPNFYEFLQQAKISGLQKPEHYGLSIVLGTAEITLEELTTLYAMLANFGTYKPLRKMLSTSLHGEAQRGRGTLEQNNT NSTRLPRSEQMLATTMISPEASYLTLDIIKDTTRPITYNNTKHNLPIYWKTGTSSSFRDALSIGIFSKYVLAVWVGDFKG QTHGTFTGNISAAPLFFNIIESIAEPNKDKDLILSKINKLNITKVKVCADTGDIDNDMCPLKAESLFIKGKSPIKQSGIY RKMLIDLKTGMPACHFIQGQTEYKTVNLWPADMISVYQKAGIHILPKPIPTNHCNRLINWHHQKPKIIYPLRNSIHSIKD SDNITFSAISDNKTNNIFWFVDNELIATAKSNEPVIWKAKTGEFIIRAISDSGENDSIKIYIKE
Sequences:
>Translated_784_residues MTIKTKLLFITISGIIILYFAIPPAPLLKDISFSQRVFDRSGELMRISLSKDDKYRIFTPIREIPASFIEAVLLYEDRHF YKHCGINPISLAKAFYYTYLQNNRKIGGSTITMQIARLRYGINSSTILGKIHQIIKAIHVELHYSKNEILEAYLNLVPYG SNIEGITASSYIYFNRDLKDLNLLDILSLAVIPQNPLKRGGNDMNIFQARKYLFTEWLTTHPQDIIYNKLISLPIKFNQN KNLPFIAPHFTLDILANNDSPIIRTTIDKNLQTTIEKQVQLYINNLKKYGINNASVILIDFTTMEVLASVGSGDFFNNDI CGQINGTKSHRSPGSALKPFVYALSFDQSLIHPLTLLKDTPTYYDHYKPENFDSRFTGGLSVRESLIRSRNVPVIFLASK LKNPNFYEFLQQAKISGLQKPEHYGLSIVLGTAEITLEELTTLYAMLANFGTYKPLRKMLSTSLHGEAQRGRGTLEQNNT NSTRLPRSEQMLATTMISPEASYLTLDIIKDTTRPITYNNTKHNLPIYWKTGTSSSFRDALSIGIFSKYVLAVWVGDFKG QTHGTFTGNISAAPLFFNIIESIAEPNKDKDLILSKINKLNITKVKVCADTGDIDNDMCPLKAESLFIKGKSPIKQSGIY RKMLIDLKTGMPACHFIQGQTEYKTVNLWPADMISVYQKAGIHILPKPIPTNHCNRLINWHHQKPKIIYPLRNSIHSIKD SDNITFSAISDNKTNNIFWFVDNELIATAKSNEPVIWKAKTGEFIIRAISDSGENDSIKIYIKE >Mature_783_residues TIKTKLLFITISGIIILYFAIPPAPLLKDISFSQRVFDRSGELMRISLSKDDKYRIFTPIREIPASFIEAVLLYEDRHFY KHCGINPISLAKAFYYTYLQNNRKIGGSTITMQIARLRYGINSSTILGKIHQIIKAIHVELHYSKNEILEAYLNLVPYGS NIEGITASSYIYFNRDLKDLNLLDILSLAVIPQNPLKRGGNDMNIFQARKYLFTEWLTTHPQDIIYNKLISLPIKFNQNK NLPFIAPHFTLDILANNDSPIIRTTIDKNLQTTIEKQVQLYINNLKKYGINNASVILIDFTTMEVLASVGSGDFFNNDIC GQINGTKSHRSPGSALKPFVYALSFDQSLIHPLTLLKDTPTYYDHYKPENFDSRFTGGLSVRESLIRSRNVPVIFLASKL KNPNFYEFLQQAKISGLQKPEHYGLSIVLGTAEITLEELTTLYAMLANFGTYKPLRKMLSTSLHGEAQRGRGTLEQNNTN STRLPRSEQMLATTMISPEASYLTLDIIKDTTRPITYNNTKHNLPIYWKTGTSSSFRDALSIGIFSKYVLAVWVGDFKGQ THGTFTGNISAAPLFFNIIESIAEPNKDKDLILSKINKLNITKVKVCADTGDIDNDMCPLKAESLFIKGKSPIKQSGIYR KMLIDLKTGMPACHFIQGQTEYKTVNLWPADMISVYQKAGIHILPKPIPTNHCNRLINWHHQKPKIIYPLRNSIHSIKDS DNITFSAISDNKTNNIFWFVDNELIATAKSNEPVIWKAKTGEFIIRAISDSGENDSIKIYIKE
Specific function: Cell wall formation. The enzyme has a penicillin- insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a transpeptidase C-terminal domain which may not be functional [H]
COG id: COG4953
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein PbpC
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1788867, Length=817, Percent_Identity=26.5605875152999, Blast_Score=282, Evalue=6e-77, Organism=Escherichia coli, GI1786343, Length=544, Percent_Identity=25, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI87082258, Length=321, Percent_Identity=25.5451713395639, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1789601, Length=138, Percent_Identity=29.7101449275362, Blast_Score=63, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011815 - InterPro: IPR009647 - InterPro: IPR001460 [H]
Pfam domain/function: PF06832 BiPBP_C; PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-
Molecular weight: Translated: 88858; Mature: 88726
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKTKLLFITISGIIILYFAIPPAPLLKDISFSQRVFDRSGELMRISLSKDDKYRIFTP CCEEEEEEEEECCCEEEEEECCCCHHHHHCCCHHHHHHCCCCCEEEEEECCCCCEEEECC IREIPASFIEAVLLYEDRHFYKHCGINPISLAKAFYYTYLQNNRKIGGSTITMQIARLRY HHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHC GINSSTILGKIHQIIKAIHVELHYSKNEILEAYLNLVPYGSNIEGITASSYIYFNRDLKD CCCCHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHCCCCCCCCCEEECEEEEEECCCCC LNLLDILSLAVIPQNPLKRGGNDMNIFQARKYLFTEWLTTHPQDIIYNKLISLPIKFNQN CCHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCC KNLPFIAPHFTLDILANNDSPIIRTTIDKNLQTTIEKQVQLYINNLKKYGINNASVILID CCCCEEECCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE FTTMEVLASVGSGDFFNNDICGQINGTKSHRSPGSALKPFVYALSFDQSLIHPLTLLKDT EHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEEECCHHHHHHHHHHCCC PTYYDHYKPENFDSRFTGGLSVRESLIRSRNVPVIFLASKLKNPNFYEFLQQAKISGLQK CCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC PEHYGLSIVLGTAEITLEELTTLYAMLANFGTYKPLRKMLSTSLHGEAQRGRGTLEQNNT CCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCC NSTRLPRSEQMLATTMISPEASYLTLDIIKDTTRPITYNNTKHNLPIYWKTGTSSSFRDA CCCCCCCCHHHHHHEEECCCCCEEEEEEECCCCCCEEECCCCCCCEEEEECCCCCHHHHH LSIGIFSKYVLAVWVGDFKGQTHGTFTGNISAAPLFFNIIESIAEPNKDKDLILSKINKL HHHHHHHHEEHEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCC NITKVKVCADTGDIDNDMCPLKAESLFIKGKSPIKQSGIYRKMLIDLKTGMPACHFIQGQ CCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCHHHCCCHHHHHHHHHCCCCEEEEECCC TEYKTVNLWPADMISVYQKAGIHILPKPIPTNHCNRLINWHHQKPKIIYPLRNSIHSIKD CCEEEEEECHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHCCC SDNITFSAISDNKTNNIFWFVDNELIATAKSNEPVIWKAKTGEFIIRAISDSGENDSIKI CCCEEEEEECCCCCCEEEEEECCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEE YIKE EEEC >Mature Secondary Structure TIKTKLLFITISGIIILYFAIPPAPLLKDISFSQRVFDRSGELMRISLSKDDKYRIFTP CEEEEEEEEECCCEEEEEECCCCHHHHHCCCHHHHHHCCCCCEEEEEECCCCCEEEECC IREIPASFIEAVLLYEDRHFYKHCGINPISLAKAFYYTYLQNNRKIGGSTITMQIARLRY HHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHC GINSSTILGKIHQIIKAIHVELHYSKNEILEAYLNLVPYGSNIEGITASSYIYFNRDLKD CCCCHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHCCCCCCCCCEEECEEEEEECCCCC LNLLDILSLAVIPQNPLKRGGNDMNIFQARKYLFTEWLTTHPQDIIYNKLISLPIKFNQN CCHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCC KNLPFIAPHFTLDILANNDSPIIRTTIDKNLQTTIEKQVQLYINNLKKYGINNASVILID CCCCEEECCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE FTTMEVLASVGSGDFFNNDICGQINGTKSHRSPGSALKPFVYALSFDQSLIHPLTLLKDT EHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEEECCHHHHHHHHHHCCC PTYYDHYKPENFDSRFTGGLSVRESLIRSRNVPVIFLASKLKNPNFYEFLQQAKISGLQK CCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC PEHYGLSIVLGTAEITLEELTTLYAMLANFGTYKPLRKMLSTSLHGEAQRGRGTLEQNNT CCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCC NSTRLPRSEQMLATTMISPEASYLTLDIIKDTTRPITYNNTKHNLPIYWKTGTSSSFRDA CCCCCCCCHHHHHHEEECCCCCEEEEEEECCCCCCEEECCCCCCCEEEEECCCCCHHHHH LSIGIFSKYVLAVWVGDFKGQTHGTFTGNISAAPLFFNIIESIAEPNKDKDLILSKINKL HHHHHHHHEEHEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCC NITKVKVCADTGDIDNDMCPLKAESLFIKGKSPIKQSGIYRKMLIDLKTGMPACHFIQGQ CCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCHHHCCCHHHHHHHHHCCCCEEEEECCC TEYKTVNLWPADMISVYQKAGIHILPKPIPTNHCNRLINWHHQKPKIIYPLRNSIHSIKD CCEEEEEECHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHCCC SDNITFSAISDNKTNNIFWFVDNELIATAKSNEPVIWKAKTGEFIIRAISDSGENDSIKI CCCEEEEEECCCCCCEEEEEECCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEE YIKE EEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10542235; 9205837; 9278503; 9841666 [H]