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The map label for this gene is sdhC [H]

Identifier: 157825304

GI number: 157825304

Start: 173782

End: 174156

Strand: Direct

Name: sdhC [H]

Synonym: A1C_00930

Alternate gene names: 157825304

Gene position: 173782-174156 (Clockwise)

Preceding gene: 157825303

Following gene: 157825305

Centisome position: 14.12

GC content: 33.07

Gene sequence:

>375_bases
ATGACTAAAACCAAACAAGAAATTTATAATAAGCGTCCGATTTCGCCGCATTTAACTATATATAAGCCGCAAATAAGCTC
TACTTTGTCGATTTTGCATCGTATAACCGGCGTAGCTTTGTTTTTTGCGGTGTCAATCTTGGTGTGGTGGTTGATTCTTA
GTAAATATGATAATAATTATTTACAATTTGCTAAATGCTGTATTATAAAAATATGCTTAGTAGCAGTAAGCTACTCTTGG
TTTTATCATTTATGTAATGGTATCCGTCATTTATTTTGGGATATCGGTTACGGATTTTCTATAAAAGCAGTGAATATCAC
CGGTTGGTGTGTAGTGGTAGGATCTTTATTATTAACTATGTTACTATGGGTATGA

Upstream 100 bases:

>100_bases
GGCAATCTCATGAAATAATAACACACTCATGAGATTGCTTCCTCAAAACTTGCAGTTTTTCTTCGCAATGACGTTATGTA
AGTTTTTTATTATTAATATT

Downstream 100 bases:

>100_bases
AAGTATACTTGGTGAATTTCAAAAATTGGCTACGTCGTTCTCAAAGAGCTGTGGTGCTAACGTATTAAGTGTACGTTCTG
TTCCTCGCCTTATGAACTTC

Product: succinate dehydrogenase cytochrome b-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MTKTKQEIYNKRPISPHLTIYKPQISSTLSILHRITGVALFFAVSILVWWLILSKYDNNYLQFAKCCIIKICLVAVSYSW
FYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVGSLLLTMLLWV

Sequences:

>Translated_124_residues
MTKTKQEIYNKRPISPHLTIYKPQISSTLSILHRITGVALFFAVSILVWWLILSKYDNNYLQFAKCCIIKICLVAVSYSW
FYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVGSLLLTMLLWV
>Mature_123_residues
TKTKQEIYNKRPISPHLTIYKPQISSTLSILHRITGVALFFAVSILVWWLILSKYDNNYLQFAKCCIIKICLVAVSYSWF
YHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVGSLLLTMLLWV

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Homo sapiens, GI4506863, Length=110, Percent_Identity=36.3636363636364, Blast_Score=69, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6323765, Length=123, Percent_Identity=38.2113821138211, Blast_Score=80, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6322708, Length=136, Percent_Identity=36.0294117647059, Blast_Score=61, Evalue=4e-11,
Organism=Drosophila melanogaster, GI45550736, Length=133, Percent_Identity=36.8421052631579, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14362; Mature: 14231

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTKQEIYNKRPISPHLTIYKPQISSTLSILHRITGVALFFAVSILVWWLILSKYDNNY
CCCCHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
LQFAKCCIIKICLVAVSYSWFYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVGSLLLTM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHH
LLWV
HHHC
>Mature Secondary Structure 
TKTKQEIYNKRPISPHLTIYKPQISSTLSILHRITGVALFFAVSILVWWLILSKYDNNY
CCCHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
LQFAKCCIIKICLVAVSYSWFYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVGSLLLTM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHH
LLWV
HHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]