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The map label for this gene is lsrB [H]

Identifier: 157372925

GI number: 157372925

Start: 5185569

End: 5186555

Strand: Direct

Name: lsrB [H]

Synonym: Spro_4693

Alternate gene names: 157372925

Gene position: 5185569-5186555 (Clockwise)

Preceding gene: 157372924

Following gene: 157372926

Centisome position: 95.17

GC content: 53.7

Gene sequence:

>987_bases
ATGAAATTTAACCTCGCATTATTAAATGCATGTGTGGTTTCTGCGTGCATGTTATCGACAACACCTGTTCTGGCTGCTGA
AAAGTACGAAATTGCCGTGGTCGCTAAAGTGACCGGCATTCCCTGGTTCAACCGTATGGAAGTCGGCGTCAACGAAGCGG
CGAAAAAGCTCGACGTTAATGCCTATCAGACCGGGCCTGCGACCCCAGATCCCGCGGCACAGGTCAAAGTGATTGAAGAC
CTGATCGCCAAGAACGTTAACGCCATCATCGTGGTGCCGAACGACGCCAAGGTGCTGGAGCCAGTGCTGAAGAAGGCGCG
TGATAAAGGCATCGTGGTGCTGACCCATGAATCGCCGGACCAGCAGATTGGTCAGTGGGACATCGAAACCATCGACAGCG
AGAAGTATGCGCAGGCCAACGTCGATGAACTGGCAAAAGACATGGGCGGCAAAGGTGGCTATGCCATTTACGTTGGCTCG
CTGACCGTGCCGTTGCATAACGCCTGGGCGGATTCCGCCATCAAGTACCAGAAAGCCAAATATCCGGATATGTTCGAAGT
GACGTCACGTCTGCCGGTGGCCGAAAGCATTGATAAATCCTACGCCACCACGCTGGATTTGATGAAAACCTACCCGCAGA
TGAAAGGCATTATCGGTTTTGGCTCCCTCGGCCCGATTGGTGCCGGTCAGGCGGTCGCCAAGAAACGCGCCAAGGACAAG
ATTGCCGTGGTGGGTATAGCCATGCCGGCGCAGGCCGCCCCTTACCTGATGCGCGGCGACATCAAGAAAGCGCTGCTGTG
GGATCCGAAAGACGCCGGCTACGCGCTGGTGACGGTGGCCGATCAGCTCTTGCAGGGCAAAGAAGTGACCAAAGACTTGT
CGATCGAAGGTTTGGGTAAGGCCGACGTCGATATGGATAAGAAAGTGATTCGGTTTAATAAAATTCTTGAAGTGACCAAA
GATAATGCCAAATCGCTAGGCTTCTAA

Upstream 100 bases:

>100_bases
TCACAATTTCTCTACTCTCGTTACGCTCCCTCTTCCTTTCCTTTGTAATCTGCTCAGGTGGAAAAACAACCACCCCTACA
GATAAAAAAGGTACAGCGAA

Downstream 100 bases:

>100_bases
CCTTAAGTAATATTGCTCCACACCGGGAAAATCATTAAATAACGTCGGCGCGCAGCTTACCGCGCCCCGACGATAATAAA
AACCTGCACAGGTTACAGCT

Product: carbohydrate ABC transporter periplasmic-binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MKFNLALLNACVVSACMLSTTPVLAAEKYEIAVVAKVTGIPWFNRMEVGVNEAAKKLDVNAYQTGPATPDPAAQVKVIED
LIAKNVNAIIVVPNDAKVLEPVLKKARDKGIVVLTHESPDQQIGQWDIETIDSEKYAQANVDELAKDMGGKGGYAIYVGS
LTVPLHNAWADSAIKYQKAKYPDMFEVTSRLPVAESIDKSYATTLDLMKTYPQMKGIIGFGSLGPIGAGQAVAKKRAKDK
IAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGYALVTVADQLLQGKEVTKDLSIEGLGKADVDMDKKVIRFNKILEVTK
DNAKSLGF

Sequences:

>Translated_328_residues
MKFNLALLNACVVSACMLSTTPVLAAEKYEIAVVAKVTGIPWFNRMEVGVNEAAKKLDVNAYQTGPATPDPAAQVKVIED
LIAKNVNAIIVVPNDAKVLEPVLKKARDKGIVVLTHESPDQQIGQWDIETIDSEKYAQANVDELAKDMGGKGGYAIYVGS
LTVPLHNAWADSAIKYQKAKYPDMFEVTSRLPVAESIDKSYATTLDLMKTYPQMKGIIGFGSLGPIGAGQAVAKKRAKDK
IAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGYALVTVADQLLQGKEVTKDLSIEGLGKADVDMDKKVIRFNKILEVTK
DNAKSLGF
>Mature_328_residues
MKFNLALLNACVVSACMLSTTPVLAAEKYEIAVVAKVTGIPWFNRMEVGVNEAAKKLDVNAYQTGPATPDPAAQVKVIED
LIAKNVNAIIVVPNDAKVLEPVLKKARDKGIVVLTHESPDQQIGQWDIETIDSEKYAQANVDELAKDMGGKGGYAIYVGS
LTVPLHNAWADSAIKYQKAKYPDMFEVTSRLPVAESIDKSYATTLDLMKTYPQMKGIIGFGSLGPIGAGQAVAKKRAKDK
IAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGYALVTVADQLLQGKEVTKDLSIEGLGKADVDMDKKVIRFNKILEVTK
DNAKSLGF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=303, Percent_Identity=30.6930693069307, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35392; Mature: 35392

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFNLALLNACVVSACMLSTTPVLAAEKYEIAVVAKVTGIPWFNRMEVGVNEAAKKLDVN
CCCHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCC
AYQTGPATPDPAAQVKVIEDLIAKNVNAIIVVPNDAKVLEPVLKKARDKGIVVLTHESPD
EEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC
QQIGQWDIETIDSEKYAQANVDELAKDMGGKGGYAIYVGSLTVPLHNAWADSAIKYQKAK
HHCCCCCCEECCCCHHHHCCHHHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHHHHCC
YPDMFEVTSRLPVAESIDKSYATTLDLMKTYPQMKGIIGFGSLGPIGAGQAVAKKRAKDK
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHCCCC
IAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGYALVTVADQLLQGKEVTKDLSIEGLGK
EEEEEEECCCCCCCCHHHCCCCHHHEECCCCCCEEHHHHHHHHHCCHHHHHCCCCCCCCC
ADVDMDKKVIRFNKILEVTKDNAKSLGF
CCCCHHHHHHHHHHHHHHHCCCHHCCCC
>Mature Secondary Structure
MKFNLALLNACVVSACMLSTTPVLAAEKYEIAVVAKVTGIPWFNRMEVGVNEAAKKLDVN
CCCHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCC
AYQTGPATPDPAAQVKVIEDLIAKNVNAIIVVPNDAKVLEPVLKKARDKGIVVLTHESPD
EEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC
QQIGQWDIETIDSEKYAQANVDELAKDMGGKGGYAIYVGSLTVPLHNAWADSAIKYQKAK
HHCCCCCCEECCCCHHHHCCHHHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHHHHCC
YPDMFEVTSRLPVAESIDKSYATTLDLMKTYPQMKGIIGFGSLGPIGAGQAVAKKRAKDK
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHCCCC
IAVVGIAMPAQAAPYLMRGDIKKALLWDPKDAGYALVTVADQLLQGKEVTKDLSIEGLGK
EEEEEEECCCCCCCCHHHCCCCHHHEECCCCCCEEHHHHHHHHHCCHHHHHCCCCCCCCC
ADVDMDKKVIRFNKILEVTKDNAKSLGF
CCCCHHHHHHHHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA