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The map label for this gene is ybbM [H]

Identifier: 157372898

GI number: 157372898

Start: 5157673

End: 5158446

Strand: Reverse

Name: ybbM [H]

Synonym: Spro_4666

Alternate gene names: 157372898

Gene position: 5158446-5157673 (Counterclockwise)

Preceding gene: 157372899

Following gene: 157372895

Centisome position: 94.67

GC content: 52.2

Gene sequence:

>774_bases
ATGAACCAGCATAATATCAGCAATGAGTCCCTGGTGCTGTCGATGGTATTGGTGATGATCGCTATTTTCATCAGCCATAA
AGAAAAGTTGGCGTTGGAAAAAGACATTATCTGGAGCATTTGCCGCGCGGTGGTGCAGCTGATTATCGTCGGCTATGTGC
TGAAGTACATTTTTGATGTGAACAACGCTATTCTGACCGTGCTGATGGTGCTGTTTATCTGCTTTAACGCCGCTTATAAC
GCGCAAAAACGCAGTAAATATATCGGTCATGCGTTCATGACATCATTTATCGCCATTACCACTGGTGCGGTACTGACGCT
GGTGGTGCTGGTGCTGACCGGCTCGATAGAATTTACCCCGATGCAGGTGATCCCGATTTCCGGCATGGTGGCCGGTAATG
CGATGGTGGCGGTGGGGCTGTGCTACAACAACCTGGGGCAGCGTTTCAAAAGCGATCAGCAGAAGATTCAGGAAATGCTC
AGCCTGGGGGCATCACCGAAGTTTGCCTCGGCTGCGCTGATCCGCGACAGCATCCGCGCTTCGTTGATCCCGACGGTAGA
CTCGGCCAAAACCGTCGGCCTGGTCAGCCTGCCGGGCATGATGTCCGGTCTGATCTTCGCCGGTATTGACCCGGTGAAAG
CCATTAAGTACCAGATTATGGTGACCTTTATGCTGCTTTCTACCGCCAGCCTGTCGACCATTATCGCCTGCTACCTGGCC
TACCGTAAGTTCTACAATGCCCGCCATCAACTGGTGGTGAGCACGCTGAAATAG

Upstream 100 bases:

>100_bases
GTGGCAGTGCTGTGGGTCACGCATGATAAAGATGAAATCAAACATGCGGATGATGTGATTACCCTGAGTGCGCACGGTGC
TCGCGCACAGGAGACAAACG

Downstream 100 bases:

>100_bases
CGCCATAAAAACGGCCTCGGAAGAGGTAATGCTTGTAAGTTAAGGTGATATTGTTCCCTCTCCTTTGGGAGAGGGTCAGG
GTGAGGGGATACATACCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNQHNISNESLVLSMVLVMIAIFISHKEKLALEKDIIWSICRAVVQLIIVGYVLKYIFDVNNAILTVLMVLFICFNAAYN
AQKRSKYIGHAFMTSFIAITTGAVLTLVVLVLTGSIEFTPMQVIPISGMVAGNAMVAVGLCYNNLGQRFKSDQQKIQEML
SLGASPKFASAALIRDSIRASLIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLA
YRKFYNARHQLVVSTLK

Sequences:

>Translated_257_residues
MNQHNISNESLVLSMVLVMIAIFISHKEKLALEKDIIWSICRAVVQLIIVGYVLKYIFDVNNAILTVLMVLFICFNAAYN
AQKRSKYIGHAFMTSFIAITTGAVLTLVVLVLTGSIEFTPMQVIPISGMVAGNAMVAVGLCYNNLGQRFKSDQQKIQEML
SLGASPKFASAALIRDSIRASLIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLA
YRKFYNARHQLVVSTLK
>Mature_257_residues
MNQHNISNESLVLSMVLVMIAIFISHKEKLALEKDIIWSICRAVVQLIIVGYVLKYIFDVNNAILTVLMVLFICFNAAYN
AQKRSKYIGHAFMTSFIAITTGAVLTLVVLVLTGSIEFTPMQVIPISGMVAGNAMVAVGLCYNNLGQRFKSDQQKIQEML
SLGASPKFASAALIRDSIRASLIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLA
YRKFYNARHQLVVSTLK

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=257, Percent_Identity=82.1011673151751, Blast_Score=439, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 28126; Mature: 28126

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]