| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is iolC [H]
Identifier: 157372892
GI number: 157372892
Start: 5149076
End: 5151004
Strand: Direct
Name: iolC [H]
Synonym: Spro_4660
Alternate gene names: 157372892
Gene position: 5149076-5151004 (Clockwise)
Preceding gene: 157372887
Following gene: 157372893
Centisome position: 94.5
GC content: 59.56
Gene sequence:
>1929_bases ATGGCTACACAAGAAAAACAGCTTGATGTCATTTGTCTCGGGCGTATTGCCGTCGATTTCTATGCACAACAGATCGGCGC ACGCCTGGAAGATGCCAGCACATTCTCCAAATATCTCGGTGGCTCTTCCGGCAACGTGGCTTATGGCACCGCCATTCAGG GCCTGAAGTCCGGCATGCTGGCCCGCGTCGGCGACGAGCATATGGGCCGTTTCCTGCGTGAAGAACTGCAACGCGTCGGG GCCGACACCCAGTGCCTGATCACCGACCCCCAGCGGCTGACCGGCCTGGTGATCCTCGGCATCAAGGATCAGGAAACCTT CCCGCTGATTTTCTATCGTGAGAACTGTGCCGATATGGCGCTGACGCCGGACGATATCGATGAGTCCTACATCGCGTCAT CGCGCGCGCTGGCTATAACCGGCACTCACCTGTCACACCCAAACACCCGCGCCGCGGTATTAAAAGCGCTGGAATACGCC CGCCGCCATGGCCTGCGCACCGCGCTGGATATCGACTACCGACCGGTGCTGTGGGGTCTGACGTCGCTGGGTGACGGTGA AACCCGCTTTGTCGAGTCAGAGAAAGTGACCCGCGAACTGCAGGAGGTGCTGCATCACTTTGATCTGATCGTCGGCACCG AAGAAGAGTTTCACATTGCCGGTGGCAGCACCGACACCCTGACCGCGCTGAAAAACGTGCGTAAAGCGACGCAGGCCACG CTGGTCTGTAAGCGCGGCGCACAGGGCTGTTCGGTATTCGAAGGCGAGATCGCCGCCGACTGGCAGCAGGTAAAACTGCA TTCCGGGGTGCGGGTTGAAGTGCTGAACGTGCTGGGCGCAGGCGATGCCTTTATGTCCGGCCTGCTGCGTGGCTATCTGA ACGATGAAGGTTGGGATCAGGCCTGCCGCTATGCCAATGCCTGCGGCGCATTGGTGGTTTCGCGCCACGGCTGCGCCCCG GCGATGCCCAGCAAGCAGGAGCTGGATGACTATCTGCAACGCGAACAGCAAGTGAAACGCCCGGACCGCGATGAACGGCT CAACCATCTGCACCGGGTCACCACCCGCAAACAGCAATGGCCGGAACTGTGCGTGTTCGCCTTCGATCACCGCAAACAGC TGGCGGATATGGCGCGAGAAGCCAACGTCAGCGAAGAACGCATCCCCAAACTGAAAACCCTGCTGCTGACGGCGGCGCAA CAGGCCGCAGAGACCGCCGGGCTGAAGGGCAACAGCGGCATTCTGGCCGATACCACCTATGGCCAAGCGGCGCTGAACCA GATCACCGGGCAGGGTTGGTGGATAGGCCGACCGGTCGAACTGCCCGGCTCACGTCCGCTGCGGTTGGAGCACGGCAATA TTGGCTCGCAGCTGATCGACTGGCCGCAGGAGCACGTAGTGAAATGTCTGGTGTTTTACCATCCGCATGACGCCGCCGAA CTGCGCCGCGAGCAGGATGAACTGATTGGCGATGTGTATCGCGGCTGCTGCAAATCCGGCCATGAACTGTTGCTGGAAGT GATCCTGCCGGAAAGCAACGCCGACAAAGATGAAAGCCACTATCTGGAAATGCTGCAGCACTTTTATCAACTGGGAATTA AACCGGACTGGTGGAAGTTGCCACCGTTGAGTGCTGAGAACTGGCAGCAGGTCGGCGCATTGATCGACGCTAACGATCCC CAGTGTCGCGGGGTGCTGATTCTGGGGCTGGATTCGCCGGAAGAAACGCTGAAGGCGGGCTTTGCCGCGGCGGCGGATGC ACGCTGGGTAAAAGGTTTTGCCGTCGGACGCACCATTTTTGGCCAACCTTCACGCCGCTGGCTGCAGGGTGAGCTGGATG ACGCCGCGTTAATCGAGCAGGTGAAACAAAAATACCTGACGCTGATTGGTTTCTGGCGTCAATATCGCCCAACCTCTCAC CAGCATTAA
Upstream 100 bases:
>100_bases GGATATAAATTTCATTCAATCTTGAAATTGAAATCTTTATTCCTCATACTCCAAAAATGCTTCGTAGTCGGGGTTTGACT TAATACAGAAGGAAACGGGT
Downstream 100 bases:
>100_bases TTGCCGAACCCTCCCCTTAAACGGATTTTCGCCGCTTTAAGGGGATTTTTTTGCCTTTTTTCTGTGAAGTAACGCAACTT GCAATCGAATAAATCGCTTT
Product: ribokinase-like domain-containing protein
Products: NA
Alternate protein names: 2-deoxy-5-keto-D-gluconate kinase; DKG kinase [H]
Number of amino acids: Translated: 642; Mature: 641
Protein sequence:
>642_residues MATQEKQLDVICLGRIAVDFYAQQIGARLEDASTFSKYLGGSSGNVAYGTAIQGLKSGMLARVGDEHMGRFLREELQRVG ADTQCLITDPQRLTGLVILGIKDQETFPLIFYRENCADMALTPDDIDESYIASSRALAITGTHLSHPNTRAAVLKALEYA RRHGLRTALDIDYRPVLWGLTSLGDGETRFVESEKVTRELQEVLHHFDLIVGTEEEFHIAGGSTDTLTALKNVRKATQAT LVCKRGAQGCSVFEGEIAADWQQVKLHSGVRVEVLNVLGAGDAFMSGLLRGYLNDEGWDQACRYANACGALVVSRHGCAP AMPSKQELDDYLQREQQVKRPDRDERLNHLHRVTTRKQQWPELCVFAFDHRKQLADMAREANVSEERIPKLKTLLLTAAQ QAAETAGLKGNSGILADTTYGQAALNQITGQGWWIGRPVELPGSRPLRLEHGNIGSQLIDWPQEHVVKCLVFYHPHDAAE LRREQDELIGDVYRGCCKSGHELLLEVILPESNADKDESHYLEMLQHFYQLGIKPDWWKLPPLSAENWQQVGALIDANDP QCRGVLILGLDSPEETLKAGFAAAADARWVKGFAVGRTIFGQPSRRWLQGELDDAALIEQVKQKYLTLIGFWRQYRPTSH QH
Sequences:
>Translated_642_residues MATQEKQLDVICLGRIAVDFYAQQIGARLEDASTFSKYLGGSSGNVAYGTAIQGLKSGMLARVGDEHMGRFLREELQRVG ADTQCLITDPQRLTGLVILGIKDQETFPLIFYRENCADMALTPDDIDESYIASSRALAITGTHLSHPNTRAAVLKALEYA RRHGLRTALDIDYRPVLWGLTSLGDGETRFVESEKVTRELQEVLHHFDLIVGTEEEFHIAGGSTDTLTALKNVRKATQAT LVCKRGAQGCSVFEGEIAADWQQVKLHSGVRVEVLNVLGAGDAFMSGLLRGYLNDEGWDQACRYANACGALVVSRHGCAP AMPSKQELDDYLQREQQVKRPDRDERLNHLHRVTTRKQQWPELCVFAFDHRKQLADMAREANVSEERIPKLKTLLLTAAQ QAAETAGLKGNSGILADTTYGQAALNQITGQGWWIGRPVELPGSRPLRLEHGNIGSQLIDWPQEHVVKCLVFYHPHDAAE LRREQDELIGDVYRGCCKSGHELLLEVILPESNADKDESHYLEMLQHFYQLGIKPDWWKLPPLSAENWQQVGALIDANDP QCRGVLILGLDSPEETLKAGFAAAADARWVKGFAVGRTIFGQPSRRWLQGELDDAALIEQVKQKYLTLIGFWRQYRPTSH QH >Mature_641_residues ATQEKQLDVICLGRIAVDFYAQQIGARLEDASTFSKYLGGSSGNVAYGTAIQGLKSGMLARVGDEHMGRFLREELQRVGA DTQCLITDPQRLTGLVILGIKDQETFPLIFYRENCADMALTPDDIDESYIASSRALAITGTHLSHPNTRAAVLKALEYAR RHGLRTALDIDYRPVLWGLTSLGDGETRFVESEKVTRELQEVLHHFDLIVGTEEEFHIAGGSTDTLTALKNVRKATQATL VCKRGAQGCSVFEGEIAADWQQVKLHSGVRVEVLNVLGAGDAFMSGLLRGYLNDEGWDQACRYANACGALVVSRHGCAPA MPSKQELDDYLQREQQVKRPDRDERLNHLHRVTTRKQQWPELCVFAFDHRKQLADMAREANVSEERIPKLKTLLLTAAQQ AAETAGLKGNSGILADTTYGQAALNQITGQGWWIGRPVELPGSRPLRLEHGNIGSQLIDWPQEHVVKCLVFYHPHDAAEL RREQDELIGDVYRGCCKSGHELLLEVILPESNADKDESHYLEMLQHFYQLGIKPDWWKLPPLSAENWQQVGALIDANDPQ CRGVLILGLDSPEETLKAGFAAAADARWVKGFAVGRTIFGQPSRRWLQGELDDAALIEQVKQKYLTLIGFWRQYRPTSHQ H
Specific function: Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5- dehydro-2-deoxy-D-gluconate (DKGP) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
Organism=Escherichia coli, GI87081971, Length=333, Percent_Identity=20.7207207207207, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR022841 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.92 [H]
Molecular weight: Translated: 71635; Mature: 71504
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATQEKQLDVICLGRIAVDFYAQQIGARLEDASTFSKYLGGSSGNVAYGTAIQGLKSGML CCCCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCHH ARVGDEHMGRFLREELQRVGADTQCLITDPQRLTGLVILGIKDQETFPLIFYRENCADMA HHCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCEEEEEEECCCCCCEEEEEECCCCCCC LTPDDIDESYIASSRALAITGTHLSHPNTRAAVLKALEYARRHGLRTALDIDYRPVLWGL CCCCCCCHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHH TSLGDGETRFVESEKVTRELQEVLHHFDLIVGTEEEFHIAGGSTDTLTALKNVRKATQAT HCCCCCCHHEEHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCHHHHHHHHHHHHHHHHH LVCKRGAQGCSVFEGEIAADWQQVKLHSGVRVEVLNVLGAGDAFMSGLLRGYLNDEGWDQ HHHHCCCCCCCEECCHHHHCHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHCCCCCHHH ACRYANACGALVVSRHGCAPAMPSKQELDDYLQREQQVKRPDRDERLNHLHRVTTRKQQW HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC PELCVFAFDHRKQLADMAREANVSEERIPKLKTLLLTAAQQAAETAGLKGNSGILADTTY CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC GQAALNQITGQGWWIGRPVELPGSRPLRLEHGNIGSQLIDWPQEHVVKCLVFYHPHDAAE CHHHHHHHCCCCEEECCCEECCCCCCEEEECCCCCHHHHCCCHHHHHEEHHEECCCCHHH LRREQDELIGDVYRGCCKSGHELLLEVILPESNADKDESHYLEMLQHFYQLGIKPDWWKL HHHHHHHHHHHHHHHHHHHHHHEEHHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC PPLSAENWQQVGALIDANDPQCRGVLILGLDSPEETLKAGFAAAADARWVKGFAVGRTIF CCCCCCCHHHHCCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHCCHHC GQPSRRWLQGELDDAALIEQVKQKYLTLIGFWRQYRPTSHQH CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure ATQEKQLDVICLGRIAVDFYAQQIGARLEDASTFSKYLGGSSGNVAYGTAIQGLKSGML CCCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCHH ARVGDEHMGRFLREELQRVGADTQCLITDPQRLTGLVILGIKDQETFPLIFYRENCADMA HHCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCEEEEEEECCCCCCEEEEEECCCCCCC LTPDDIDESYIASSRALAITGTHLSHPNTRAAVLKALEYARRHGLRTALDIDYRPVLWGL CCCCCCCHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHH TSLGDGETRFVESEKVTRELQEVLHHFDLIVGTEEEFHIAGGSTDTLTALKNVRKATQAT HCCCCCCHHEEHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCHHHHHHHHHHHHHHHHH LVCKRGAQGCSVFEGEIAADWQQVKLHSGVRVEVLNVLGAGDAFMSGLLRGYLNDEGWDQ HHHHCCCCCCCEECCHHHHCHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHCCCCCHHH ACRYANACGALVVSRHGCAPAMPSKQELDDYLQREQQVKRPDRDERLNHLHRVTTRKQQW HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC PELCVFAFDHRKQLADMAREANVSEERIPKLKTLLLTAAQQAAETAGLKGNSGILADTTY CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC GQAALNQITGQGWWIGRPVELPGSRPLRLEHGNIGSQLIDWPQEHVVKCLVFYHPHDAAE CHHHHHHHCCCCEEECCCEECCCCCCEEEECCCCCHHHHCCCHHHHHEEHHEECCCCHHH LRREQDELIGDVYRGCCKSGHELLLEVILPESNADKDESHYLEMLQHFYQLGIKPDWWKL HHHHHHHHHHHHHHHHHHHHHHEEHHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC PPLSAENWQQVGALIDANDPQCRGVLILGLDSPEETLKAGFAAAADARWVKGFAVGRTIF CCCCCCCHHHHCCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHCCHHC GQPSRRWLQGELDDAALIEQVKQKYLTLIGFWRQYRPTSHQH CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]