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The map label for this gene is rpe [H]

Identifier: 157372833

GI number: 157372833

Start: 5076214

End: 5076891

Strand: Reverse

Name: rpe [H]

Synonym: Spro_4601

Alternate gene names: 157372833

Gene position: 5076891-5076214 (Counterclockwise)

Preceding gene: 157372834

Following gene: 157372832

Centisome position: 93.17

GC content: 54.13

Gene sequence:

>678_bases
ATGAAAAAATTTTTGATTGCCCCGTCCATTTTGTCAGCAGACTTTGCCCGTCTGGGTGAAGATACTGCCAACGTGTTGGC
CGCAGGCGGCGACGTAGTGCATTTTGACGTAATGGATAACCACTACGTTCCCAATCTGACCATCGGGCCGATGGTTTGTC
AGGCGCTGCGTAATTACGGCATCACCGCACCGATTGACGTTCACCTGATGGTGAAACCGGTCGACCGCATCGTGCCGGAT
TTCGCTGCAGCGGGCGCCAGTTACATCTCTTTCCATCCGGAAGCCTCCGAACACGTCGATCGCACCATTCAATTGATTAA
AGAGCACGGCTGTAAAGCCGGCCTGGTGTTCAATCCGGCAACGCCGCTCAGCTACCTCGATTACGTGATGGATAAAATCG
ATGTGATCCTGTTGATGTCGGTCAACCCTGGTTTTGGCGGTCAGTCGTTTATCCATGGCACTTTGGATAAGCTGCGTCAG
GTGCGCAAAATGATCGACGAAAGCGGTCGTGATATCCGACTGGAAGTGGATGGTGGCGTGAAGGTCGACAATATCGCCGA
GATCGCTGCCGCCGGTGCGGACATGTTTGTCGCAGGTTCCGCCATCTTCAGCAAGCCGGATTATCGTCGGGTGATCGACG
AAATGCGCAGCGAGTTGGCGAAGGTGACGCATGGCTGA

Upstream 100 bases:

>100_bases
CAGCAAAGTGAACGAGCTTTTAGCGCTGTATCGTTAAACCGGGGTTACGCCCCGGCGTAGTTATCCTATGGATTTCGAAC
CCTACGTTTGGAGATAGCGG

Downstream 100 bases:

>100_bases
TTTTGGAGCCATCCGCGCTCTGGCTTTCGATCTCGATGGCACGCTGGTAGACAGCGCGCCGGGGTTGGCTGCCGCTATCG
ATCTGGCCTTGGCGGAAATG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MKKFLIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCQALRNYGITAPIDVHLMVKPVDRIVPD
FAAAGASYISFHPEASEHVDRTIQLIKEHGCKAGLVFNPATPLSYLDYVMDKIDVILLMSVNPGFGGQSFIHGTLDKLRQ
VRKMIDESGRDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFSKPDYRRVIDEMRSELAKVTHG

Sequences:

>Translated_225_residues
MKKFLIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCQALRNYGITAPIDVHLMVKPVDRIVPD
FAAAGASYISFHPEASEHVDRTIQLIKEHGCKAGLVFNPATPLSYLDYVMDKIDVILLMSVNPGFGGQSFIHGTLDKLRQ
VRKMIDESGRDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFSKPDYRRVIDEMRSELAKVTHG
>Mature_225_residues
MKKFLIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCQALRNYGITAPIDVHLMVKPVDRIVPD
FAAAGASYISFHPEASEHVDRTIQLIKEHGCKAGLVFNPATPLSYLDYVMDKIDVILLMSVNPGFGGQSFIHGTLDKLRQ
VRKMIDESGRDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFSKPDYRRVIDEMRSELAKVTHG

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=213, Percent_Identity=41.3145539906103, Blast_Score=161, Evalue=4e-40,
Organism=Homo sapiens, GI219879828, Length=213, Percent_Identity=39.906103286385, Blast_Score=152, Evalue=2e-37,
Organism=Homo sapiens, GI24307923, Length=169, Percent_Identity=35.5029585798817, Blast_Score=101, Evalue=4e-22,
Organism=Escherichia coli, GI1789788, Length=224, Percent_Identity=88.3928571428571, Blast_Score=408, Evalue=1e-115,
Organism=Escherichia coli, GI1790523, Length=197, Percent_Identity=36.5482233502538, Blast_Score=142, Evalue=1e-35,
Organism=Escherichia coli, GI1790754, Length=211, Percent_Identity=28.9099526066351, Blast_Score=94, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17552948, Length=217, Percent_Identity=38.7096774193548, Blast_Score=147, Evalue=5e-36,
Organism=Saccharomyces cerevisiae, GI6322341, Length=233, Percent_Identity=37.3390557939914, Blast_Score=155, Evalue=6e-39,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=38.8625592417062, Blast_Score=152, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24481; Mature: 24481

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCQALRNYG
CCCEEECCHHHHHHHHHHCCHHHHHEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
ITAPIDVHLMVKPVDRIVPDFAAAGASYISFHPEASEHVDRTIQLIKEHGCKAGLVFNPA
CCCCEEEEEEECCHHHHHHHHHHCCCHHEEECCCHHHHHHHHHHHHHHCCCCCCEEECCC
TPLSYLDYVMDKIDVILLMSVNPGFGGQSFIHGTLDKLRQVRKMIDESGRDIRLEVDGGV
CHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
KVDNIAEIAAAGADMFVAGSAIFSKPDYRRVIDEMRSELAKVTHG
CHHHHHHHHHCCCCCEEECHHHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKFLIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCQALRNYG
CCCEEECCHHHHHHHHHHCCHHHHHEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
ITAPIDVHLMVKPVDRIVPDFAAAGASYISFHPEASEHVDRTIQLIKEHGCKAGLVFNPA
CCCCEEEEEEECCHHHHHHHHHHCCCHHEEECCCHHHHHHHHHHHHHHCCCCCCEEECCC
TPLSYLDYVMDKIDVILLMSVNPGFGGQSFIHGTLDKLRQVRKMIDESGRDIRLEVDGGV
CHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
KVDNIAEIAAAGADMFVAGSAIFSKPDYRRVIDEMRSELAKVTHG
CHHHHHHHHHCCCCCEEECHHHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA