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The map label for this gene is nirD [H]

Identifier: 157372828

GI number: 157372828

Start: 5071855

End: 5072181

Strand: Direct

Name: nirD [H]

Synonym: Spro_4596

Alternate gene names: 157372828

Gene position: 5071855-5072181 (Clockwise)

Preceding gene: 157372827

Following gene: 157372829

Centisome position: 93.08

GC content: 59.94

Gene sequence:

>327_bases
ATGAGCCAGTGGACAACCCTTTGCGCCATCACCGATATTCTGCCTGGCACCGGCGTGTGTGCCCTGGTCGGCGACCAACA
GGTGGCGATTTTCCGCCCCTTTGCCGACGAGCAGGTGTTTGCCATCAGCAATATTGATCCCTTCGCCCAGGCCAGCGTGT
TGTCACGTGGGCTGATTGCCGAACATCAGGGTGAGCTGTGGGTCGCCAGCCCGCTAAAAAAACAGCATTTCCGCCTGCAC
GACGGCTACTGTCTGGAAGATGACAGTCGCTGCGTCGCGCATTTCACCAGCCGGGTTGTGGACGGCATGGTACAGGTCGC
GGCCTGA

Upstream 100 bases:

>100_bases
ATCCTAACGTCCAGGTGGTCGCCGAGCGCGAGCAGCACCGTCCGGCACGTCCGGATGAACGCATTCCCGTCACCCTGCTT
GAAGCCGAGGAGAACAACGT

Downstream 100 bases:

>100_bases
TATTTTTATTTAACCTCAGGGGAAGCAGCATGTTCACCGATACCATCAACAAATGTGCCGCCAACGCGGCGCGCATCGTC
AGGCTGGCAAAGCACAGCCC

Product: nitrite reductase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MSQWTTLCAITDILPGTGVCALVGDQQVAIFRPFADEQVFAISNIDPFAQASVLSRGLIAEHQGELWVASPLKKQHFRLH
DGYCLEDDSRCVAHFTSRVVDGMVQVAA

Sequences:

>Translated_108_residues
MSQWTTLCAITDILPGTGVCALVGDQQVAIFRPFADEQVFAISNIDPFAQASVLSRGLIAEHQGELWVASPLKKQHFRLH
DGYCLEDDSRCVAHFTSRVVDGMVQVAA
>Mature_107_residues
SQWTTLCAITDILPGTGVCALVGDQQVAIFRPFADEQVFAISNIDPFAQASVLSRGLIAEHQGELWVASPLKKQHFRLHD
GYCLEDDSRCVAHFTSRVVDGMVQVAA

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=106, Percent_Identity=71.6981132075472, Blast_Score=165, Evalue=6e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 11818; Mature: 11686

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQWTTLCAITDILPGTGVCALVGDQQVAIFRPFADEQVFAISNIDPFAQASVLSRGLIA
CCCHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCEEEEECCCCCHHHHHHHHCCCCC
EHQGELWVASPLKKQHFRLHDGYCLEDDSRCVAHFTSRVVDGMVQVAA
CCCCCEEEECCCCCCCEECCCCEEECCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQWTTLCAITDILPGTGVCALVGDQQVAIFRPFADEQVFAISNIDPFAQASVLSRGLIA
CCHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCEEEEECCCCCHHHHHHHHCCCCC
EHQGELWVASPLKKQHFRLHDGYCLEDDSRCVAHFTSRVVDGMVQVAA
CCCCCEEEECCCCCCCEECCCCEEECCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]