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The map label for this gene is yddE [C]

Identifier: 157372806

GI number: 157372806

Start: 5048349

End: 5049131

Strand: Reverse

Name: yddE [C]

Synonym: Spro_4574

Alternate gene names: 157372806

Gene position: 5049131-5048349 (Counterclockwise)

Preceding gene: 157372807

Following gene: 157372804

Centisome position: 92.66

GC content: 60.54

Gene sequence:

>783_bases
ATGGCAGAAAATTACTTCCATATTGCGGCCTTCACCGGTAAAGGGTTTCGGGGCAATCCGGCCGGCGTCTGCCTGTTAAA
GCAGCCGTTGTCGGCTGCGGAGATGCAGGCCATCGCCAATGAACTGAGCCTGCCGGAAACCAGCTTTGTCTGGGACGATG
GCGATATGTCGGCCATCCGTTGGTTTACTCCCCAGCGAGAGGTCGATTTGTGCGGTCATGGCACGCTGGCGGCGGCACAC
GTGATGTTCAGCGTGGTGAACCCGGCGCTGCAGGATATTCGTTTCCGCTCGGCGAGCGGCGACTTGTACGTTAAACGCGA
CGCCGAAGATGGCGAACGCCTGGTCCTGGATTTCCCGTCCCGGCCACCGCAGAAGGTTGTGGAGCCTGAAGGGTTGGCGG
CGCTGCTGGGGGCTAATCCGCAGGAAGTGTGGCAGGCCAATGCGCTGTTGGTGGTATTGGAAAACGAAGCGCAGGTCAGG
GCATTACAGCCGGATATCCCGGCACTGATTGCCCTGGTTGGCCGGGCCGTGATTGTCAGTGCTCCGGGTGAGACGGCGGA
TTTTGTCTCGCGCTATTTTACCCTCGACGGCGGCGAAGATCCGGTGACCGGCTCCGCACACTGCACGCTGATGCCCTACT
GGAGCGCACGTCTTGGTCGCCATCAGCTGCACGCCCGGCAGATTTCGGCGCGCGGCGGCGAGTTGTTCTGTGAGCTGAAG
GGCGATCGCACCTTGATTGGCGGCTATGCACACACGTTTTTGCGTGGGGAATTGAGCTTGTAA

Upstream 100 bases:

>100_bases
CGACTGCTGCGCAGCAAAAAGGCCTGGATCATTTTTAACGTTTCTATGGGGTTGCTCACCGCGGCCTGTGTGTTACTCAT
CTGGCATTAAGGAATTGCGG

Downstream 100 bases:

>100_bases
TCAGGCTGAGCCACGCTCAACCAGCCGCCACTCAAGCACTTCATTGCGCGGTGGTTGTTGCGGATTTTTGATTTTTTCCA
GCAGCAACTGCACGCTGCGC

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MAENYFHIAAFTGKGFRGNPAGVCLLKQPLSAAEMQAIANELSLPETSFVWDDGDMSAIRWFTPQREVDLCGHGTLAAAH
VMFSVVNPALQDIRFRSASGDLYVKRDAEDGERLVLDFPSRPPQKVVEPEGLAALLGANPQEVWQANALLVVLENEAQVR
ALQPDIPALIALVGRAVIVSAPGETADFVSRYFTLDGGEDPVTGSAHCTLMPYWSARLGRHQLHARQISARGGELFCELK
GDRTLIGGYAHTFLRGELSL

Sequences:

>Translated_260_residues
MAENYFHIAAFTGKGFRGNPAGVCLLKQPLSAAEMQAIANELSLPETSFVWDDGDMSAIRWFTPQREVDLCGHGTLAAAH
VMFSVVNPALQDIRFRSASGDLYVKRDAEDGERLVLDFPSRPPQKVVEPEGLAALLGANPQEVWQANALLVVLENEAQVR
ALQPDIPALIALVGRAVIVSAPGETADFVSRYFTLDGGEDPVTGSAHCTLMPYWSARLGRHQLHARQISARGGELFCELK
GDRTLIGGYAHTFLRGELSL
>Mature_259_residues
AENYFHIAAFTGKGFRGNPAGVCLLKQPLSAAEMQAIANELSLPETSFVWDDGDMSAIRWFTPQREVDLCGHGTLAAAHV
MFSVVNPALQDIRFRSASGDLYVKRDAEDGERLVLDFPSRPPQKVVEPEGLAALLGANPQEVWQANALLVVLENEAQVRA
LQPDIPALIALVGRAVIVSAPGETADFVSRYFTLDGGEDPVTGSAHCTLMPYWSARLGRHQLHARQISARGGELFCELKG
DRTLIGGYAHTFLRGELSL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=281, Percent_Identity=38.7900355871886, Blast_Score=149, Evalue=3e-36,
Organism=Homo sapiens, GI74316009, Length=247, Percent_Identity=37.6518218623482, Blast_Score=132, Evalue=4e-31,
Organism=Escherichia coli, GI1787737, Length=231, Percent_Identity=33.7662337662338, Blast_Score=83, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17542160, Length=310, Percent_Identity=32.5806451612903, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17542154, Length=310, Percent_Identity=32.5806451612903, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17542158, Length=315, Percent_Identity=30.7936507936508, Blast_Score=113, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI17542152, Length=315, Percent_Identity=30.7936507936508, Blast_Score=113, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 28254; Mature: 28123

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENYFHIAAFTGKGFRGNPAGVCLLKQPLSAAEMQAIANELSLPETSFVWDDGDMSAIR
CCCCEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCEEE
WFTPQREVDLCGHGTLAAAHVMFSVVNPALQDIRFRSASGDLYVKRDAEDGERLVLDFPS
EECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCEEEEECCC
RPPQKVVEPEGLAALLGANPQEVWQANALLVVLENEAQVRALQPDIPALIALVGRAVIVS
CCHHHHCCCCCEEEEECCCHHHHHCCCEEEEEEECCCEEEEECCCHHHHHHHHCCEEEEE
APGETADFVSRYFTLDGGEDPVTGSAHCTLMPYWSARLGRHQLHARQISARGGELFCELK
CCCCHHHHHHHEEECCCCCCCCCCCCEEEEEECHHHHHCHHHHHHHHHCCCCCEEEEEEC
GDRTLIGGYAHTFLRGELSL
CCEEEECHHHHEEEEEECCC
>Mature Secondary Structure 
AENYFHIAAFTGKGFRGNPAGVCLLKQPLSAAEMQAIANELSLPETSFVWDDGDMSAIR
CCCEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCEEE
WFTPQREVDLCGHGTLAAAHVMFSVVNPALQDIRFRSASGDLYVKRDAEDGERLVLDFPS
EECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCEEEEECCC
RPPQKVVEPEGLAALLGANPQEVWQANALLVVLENEAQVRALQPDIPALIALVGRAVIVS
CCHHHHCCCCCEEEEECCCHHHHHCCCEEEEEEECCCEEEEECCCHHHHHHHHCCEEEEE
APGETADFVSRYFTLDGGEDPVTGSAHCTLMPYWSARLGRHQLHARQISARGGELFCELK
CCCCHHHHHHHEEECCCCCCCCCCCCEEEEEECHHHHHCHHHHHHHHHCCCCCEEEEEEC
GDRTLIGGYAHTFLRGELSL
CCEEEECHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]