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The map label for this gene is 157372688

Identifier: 157372688

GI number: 157372688

Start: 4927817

End: 4928266

Strand: Direct

Name: 157372688

Synonym: Spro_4455

Alternate gene names: NA

Gene position: 4927817-4928266 (Clockwise)

Preceding gene: 157372687

Following gene: 157372689

Centisome position: 90.44

GC content: 60.0

Gene sequence:

>450_bases
GTGCTTTCCCACCGGCGGGATGTTGCCGACGATTTGGTTCAAGCCACCTGCGTGCGGGCGCTGGAACGCGCCGCACAGTT
TGCCGTGGGCACGCGGATGGACCGCTGGTTGTTTGCGATCCTTCATTCTATCTGGCTTAACGAGACTCGCGCCCAGCATA
TCCGCCAGGGGCAGGGTTTTGTCGACGTCGAAGAACTGGCAGGGTCGGAAAACAGTGAAGAGCCGATTTGGGCCAATGAG
GTGATGCAGCGGGTTAACCGGCTGCCGGAGGCGCAGCGCAATACGCTGTTTCTGGTCTATGTGGAGGAGCTGTCTTACCG
TGAGGCAGCCGAGGTGCTTGGCGTGCCCATCGGCACCATCATGAGCCGTCTGGCGGCGGCACGCCTGAGATTGGCAAATG
ACTGCATGCTGCAGACCCGTTCACCCCAGGCAAAAGGAGAACAATCATGA

Upstream 100 bases:

>100_bases
CAGAATCATGATCTAGCCTGGCCCGGAGGTAAACATCAGTAGCGACGCGATCCGTAACGAAATCGGCCAGTATCTTTCCC
GCCTGTGGCGCTATGGTCTG

Downstream 100 bases:

>100_bases
GCTCAACCTACGCTGCTGATGAACTGCTGGTCGCCTACCTGGACAATCAATTGGACCCACGGCAGCGCCAACTTCTGGAA
CAGCGCCTGATCGATGAACC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma Factor Protein; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Family Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Family Protein; ECF Family RNA Polymerase Sigma Factor; ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-E Factor Protein; RNA Polymerase Sigma-70 Factor ECF Subfamily; Extracytoplasmic Sigma Factor Protein; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-70 Factor; ECF Sigma Factor PrtI; RNA Polymerase ECF Sigma Factor; RNA Polymerase Sigma-24 Factor; DNA-Directed RNA Polymerase Sigma Subunit PrtI; ECF Subfamily RNA Polymerase Sigma-; Extracytoplasmic Sigma Factor EcfR; RNA Polymerase Sigma-54 Factor RpoN; RNA Polymerase ECF-Type Sigma Factor

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MLSHRRDVADDLVQATCVRALERAAQFAVGTRMDRWLFAILHSIWLNETRAQHIRQGQGFVDVEELAGSENSEEPIWANE
VMQRVNRLPEAQRNTLFLVYVEELSYREAAEVLGVPIGTIMSRLAAARLRLANDCMLQTRSPQAKGEQS

Sequences:

>Translated_149_residues
MLSHRRDVADDLVQATCVRALERAAQFAVGTRMDRWLFAILHSIWLNETRAQHIRQGQGFVDVEELAGSENSEEPIWANE
VMQRVNRLPEAQRNTLFLVYVEELSYREAAEVLGVPIGTIMSRLAAARLRLANDCMLQTRSPQAKGEQS
>Mature_149_residues
MLSHRRDVADDLVQATCVRALERAAQFAVGTRMDRWLFAILHSIWLNETRAQHIRQGQGFVDVEELAGSENSEEPIWANE
VMQRVNRLPEAQRNTLFLVYVEELSYREAAEVLGVPIGTIMSRLAAARLRLANDCMLQTRSPQAKGEQS

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16906; Mature: 16906

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSHRRDVADDLVQATCVRALERAAQFAVGTRMDRWLFAILHSIWLNETRAQHIRQGQGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCC
VDVEELAGSENSEEPIWANEVMQRVNRLPEAQRNTLFLVYVEELSYREAAEVLGVPIGTI
EEHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHCCCEEEEEHHHHHHHHHHHHHCCCHHHH
MSRLAAARLRLANDCMLQTRSPQAKGEQS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLSHRRDVADDLVQATCVRALERAAQFAVGTRMDRWLFAILHSIWLNETRAQHIRQGQGF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCC
VDVEELAGSENSEEPIWANEVMQRVNRLPEAQRNTLFLVYVEELSYREAAEVLGVPIGTI
EEHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHCCCEEEEEHHHHHHHHHHHHHCCCHHHH
MSRLAAARLRLANDCMLQTRSPQAKGEQS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA