Click here to switch to the map view.

The map label for this gene is rnk [H]

Identifier: 157372615

GI number: 157372615

Start: 4848974

End: 4849384

Strand: Direct

Name: rnk [H]

Synonym: Spro_4382

Alternate gene names: 157372615

Gene position: 4848974-4849384 (Clockwise)

Preceding gene: 157372604

Following gene: 157372620

Centisome position: 88.99

GC content: 57.91

Gene sequence:

>411_bases
ATGACCAAACCAACCATTACTATTAATGAGCTGGATGCGGAGCGCCTGGATGCGCTATTGGCACAACCGGCCTTTGCCAA
CACCGATGTCGCCACCGCGCTGAACATCGAGCTGGATCGCGCCGAAATTCTGCCGCCGTCCCAGATCCCAGCCAACGTGG
TGACCATGAACAGCCGCGTGCGTTTCCGCGATCTGCATACTGCAGAAGAACACGTGCGGACGCTGGTTTACCCGGCTTCG
CTGAAGGACAGCCACGAACAGCTTTCGGTAATGGCACCTTTGGGCGCAGCGCTGCTGGGCATGCACGTAGGTAACCAGAT
TACCTGGCAGTTGCCGAACGGTGAAGAAGCGCGTATCGAAGTGCTGGAACTGTTGTACCAGCCGGAAGCGGCGGGTGAAT
ACCACCGCTAA

Upstream 100 bases:

>100_bases
AACACCCCCGCTCCTCTGGCGCGGGGGTGTTGCTTTTGTGCTGTTTTTCCGAATTTATGGGCGCGTAACCTGACGCCCTT
TGATTTGACTGGAGAGTGGA

Downstream 100 bases:

>100_bases
GCGGTTATCAGGGCGGTACCCTGCCGCCCTTTCTGTGTCCTGCCTGTCCGAAAATACTTAGCGGAATTTCTTGTGGTTGG
CGTCGCGGGTTTGCTTGAAA

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MTKPTITINELDAERLDALLAQPAFANTDVATALNIELDRAEILPPSQIPANVVTMNSRVRFRDLHTAEEHVRTLVYPAS
LKDSHEQLSVMAPLGAALLGMHVGNQITWQLPNGEEARIEVLELLYQPEAAGEYHR

Sequences:

>Translated_136_residues
MTKPTITINELDAERLDALLAQPAFANTDVATALNIELDRAEILPPSQIPANVVTMNSRVRFRDLHTAEEHVRTLVYPAS
LKDSHEQLSVMAPLGAALLGMHVGNQITWQLPNGEEARIEVLELLYQPEAAGEYHR
>Mature_135_residues
TKPTITINELDAERLDALLAQPAFANTDVATALNIELDRAEILPPSQIPANVVTMNSRVRFRDLHTAEEHVRTLVYPASL
KDSHEQLSVMAPLGAALLGMHVGNQITWQLPNGEEARIEVLELLYQPEAAGEYHR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=134, Percent_Identity=62.6865671641791, Blast_Score=175, Evalue=9e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 15075; Mature: 14944

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPTITINELDAERLDALLAQPAFANTDVATALNIELDRAEILPPSQIPANVVTMNSRV
CCCCCEEEECCCHHHHHHHHCCCCCCCCCCEEEEEEEECHHHCCCCCCCCCEEEEECCCE
RFRDLHTAEEHVRTLVYPASLKDSHEQLSVMAPLGAALLGMHVGNQITWQLPNGEEARIE
EEHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
VLELLYQPEAAGEYHR
HHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TKPTITINELDAERLDALLAQPAFANTDVATALNIELDRAEILPPSQIPANVVTMNSRV
CCCCEEEECCCHHHHHHHHCCCCCCCCCCEEEEEEEECHHHCCCCCCCCCEEEEECCCE
RFRDLHTAEEHVRTLVYPASLKDSHEQLSVMAPLGAALLGMHVGNQITWQLPNGEEARIE
EEHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
VLELLYQPEAAGEYHR
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]