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The map label for this gene is ygiD [H]

Identifier: 157372517

GI number: 157372517

Start: 4748817

End: 4749599

Strand: Reverse

Name: ygiD [H]

Synonym: Spro_4284

Alternate gene names: 157372517

Gene position: 4749599-4748817 (Counterclockwise)

Preceding gene: 157372519

Following gene: 157372515

Centisome position: 87.17

GC content: 57.73

Gene sequence:

>783_bases
ATGAAAACCTCTCGTATGCCAGCACTTTTCCTCGGCCACGGTAGCCCGATGAACGCGCTGGAAGAAAACCGCTACACCCG
GGCATGGCGTACGTTGGGTGAAACCTTGCCACGTCCGAAGGGCATCGTTGCCGTATCCGCTCACTGGTATACCCGTGGCA
CCGCCGTTACTGCGATGGAAAAACCGAAAACCATCCATGACTTTGGTGGTTTCCCACAGGCGCTGTTTGATACCCAGTAT
CCGGCCCCCGGCTCTCCCGAATTGGCTGCGCAGGTCCAGCAGGTGTTGGAGCCGACTCGCGTCAAGGCTGACGTCAGTGA
ATGGGGGTTGGATCACGGTACCTGGGGCGTGTTGATCAAAATGTACCCTGAGGCGGACATTCCGGTGGTGCAGCTCAGCA
TCGACGGTACTCAGCCGGCAGAATACCATTATGAGCTGGGCCGCAAGCTGGCGGAGTTACGCGAACAGGGGATTATGATC
GTTGCCAGCGGTAACGTGGTGCATAACCTGCGGATGGTGAAATGGCAGGGTGACGCGACGCCTTATCCGTGGGCCACGTC
GTTTGACAAGTTCGTGCGGGATAACCTGAATTATCATGGCGATAACCACCCGCTGGTGAACTTTATGCAGCATGAAGGCG
CGGCGCTTTCGAACCCGACGCCGGAGCACTACCTGCCGCTGCTGTATGTGCTTGGCGGTTGGGACGGCAAGGAAGCGATC
ACCGTGCCGGTAGATGGCATTGAGATGAGCTCATTGAGCATGCTGTCAGTGCAGATCGGCTAG

Upstream 100 bases:

>100_bases
AATTTATTGAAGATCATCATCATGGTTATCCGGCTGTTTTACCTCGGCAAACGGCGTAGTCTGGTTTATAGAATGTATTG
CGACCAACCAAGGATCCTCT

Downstream 100 bases:

>100_bases
ATCATTCACGCCAGCTCAGGCTGGCGTGGATTTATCGGCAAAACCGCAGGACTCGCGGATCACCAGAGAAGGCGGCAGGA
TGATACGTTTTGGCGGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKTSRMPALFLGHGSPMNALEENRYTRAWRTLGETLPRPKGIVAVSAHWYTRGTAVTAMEKPKTIHDFGGFPQALFDTQY
PAPGSPELAAQVQQVLEPTRVKADVSEWGLDHGTWGVLIKMYPEADIPVVQLSIDGTQPAEYHYELGRKLAELREQGIMI
VASGNVVHNLRMVKWQGDATPYPWATSFDKFVRDNLNYHGDNHPLVNFMQHEGAALSNPTPEHYLPLLYVLGGWDGKEAI
TVPVDGIEMSSLSMLSVQIG

Sequences:

>Translated_260_residues
MKTSRMPALFLGHGSPMNALEENRYTRAWRTLGETLPRPKGIVAVSAHWYTRGTAVTAMEKPKTIHDFGGFPQALFDTQY
PAPGSPELAAQVQQVLEPTRVKADVSEWGLDHGTWGVLIKMYPEADIPVVQLSIDGTQPAEYHYELGRKLAELREQGIMI
VASGNVVHNLRMVKWQGDATPYPWATSFDKFVRDNLNYHGDNHPLVNFMQHEGAALSNPTPEHYLPLLYVLGGWDGKEAI
TVPVDGIEMSSLSMLSVQIG
>Mature_260_residues
MKTSRMPALFLGHGSPMNALEENRYTRAWRTLGETLPRPKGIVAVSAHWYTRGTAVTAMEKPKTIHDFGGFPQALFDTQY
PAPGSPELAAQVQQVLEPTRVKADVSEWGLDHGTWGVLIKMYPEADIPVVQLSIDGTQPAEYHYELGRKLAELREQGIMI
VASGNVVHNLRMVKWQGDATPYPWATSFDKFVRDNLNYHGDNHPLVNFMQHEGAALSNPTPEHYLPLLYVLGGWDGKEAI
TVPVDGIEMSSLSMLSVQIG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=70.9923664122137, Blast_Score=403, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28877; Mature: 28877

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSRMPALFLGHGSPMNALEENRYTRAWRTLGETLPRPKGIVAVSAHWYTRGTAVTAME
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEECC
KPKTIHDFGGFPQALFDTQYPAPGSPELAAQVQQVLEPTRVKADVSEWGLDHGTWGVLIK
CCCCHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCHHHHCCCHHHCCCCCCCEEEEEE
MYPEADIPVVQLSIDGTQPAEYHYELGRKLAELREQGIMIVASGNVVHNLRMVKWQGDAT
ECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEEEEECCCCC
PYPWATSFDKFVRDNLNYHGDNHPLVNFMQHEGAALSNPTPEHYLPLLYVLGGWDGKEAI
CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHEEEEEEECCCCCCEE
TVPVDGIEMSSLSMLSVQIG
EEEECCCEECCEEEEEEEEC
>Mature Secondary Structure
MKTSRMPALFLGHGSPMNALEENRYTRAWRTLGETLPRPKGIVAVSAHWYTRGTAVTAME
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEECC
KPKTIHDFGGFPQALFDTQYPAPGSPELAAQVQQVLEPTRVKADVSEWGLDHGTWGVLIK
CCCCHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCHHHHCCCHHHCCCCCCCEEEEEE
MYPEADIPVVQLSIDGTQPAEYHYELGRKLAELREQGIMIVASGNVVHNLRMVKWQGDAT
ECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEEEEECCCCC
PYPWATSFDKFVRDNLNYHGDNHPLVNFMQHEGAALSNPTPEHYLPLLYVLGGWDGKEAI
CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHEEEEEEECCCCCCEE
TVPVDGIEMSSLSMLSVQIG
EEEECCCEECCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]