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The map label for this gene is yphF [H]

Identifier: 157372462

GI number: 157372462

Start: 4688592

End: 4689575

Strand: Reverse

Name: yphF [H]

Synonym: Spro_4229

Alternate gene names: 157372462

Gene position: 4689575-4688592 (Counterclockwise)

Preceding gene: 157372463

Following gene: 157372461

Centisome position: 86.07

GC content: 51.73

Gene sequence:

>984_bases
ATGTTGCTAAAAAATATAAAACACATGCTGTTAGCCATTACCGGGGGCCTGATTATTTTCAGTGCAGGCGCACAGGCTAA
AAACGATAAAACCACCATCGGCGCGATTTATCTCGATACCCAGGGGTATTACGCCGGGGTCCGCTGGGGTGTGCAGGATG
GTGCCGCCAAGGGCGGAGGGAAAATCGAAATCATAGAAACCAATGCGCAGGGGGATGTTTCTAAAGAGAGTTCGTTTATC
GATACCATGATCGCACGCGACGTAAATGCCGTGGTGCTTTCCGCCGTTTCGGTCAATGGCAGCGTGCGGGCCATCAAGCG
TGCCAACGAAGCGAATATTCCGGTGATTTGTTACAACACCTGCATTAACGAGAAAGGCGTAGATAACTATGTATATGCCT
ATCTGGTCGGTGATCCCTATGAGTTTGGCAAAAAACTGGGTAATACCGCCGCCGATTACTTTATAGAAAAGAAAATCACC
GAACCCGCGATTGCGGTAATTAACTGCGAAGCCTTCGAGGTTTGCGTGCAGCGGCGTAAAGGTTTTGAAGATGCGCTAAA
AGCGAAAGTGCCGGGCATGAAAATCGTCGCCAATCAGGAGGGTACGGTGCTGGATAAGGCGATCTCGGTCGGCGAAAAAC
TGTTGATCTCCTCCGGGAATGTCGATGCCATTTTCGGCGAGTCCGGCGGTGCCACGCTCGGTGCGGTTAAAGCCGTGCGC
AATCAGAACAAGGTCGGGAAAACGGTGGTTTTCGGCTCGGATATGACCACTGAAATCGCGCAGGAGCTGGTTAACCGCCA
GGTACTGCAAGCGGTGGTGGATATCTCGGGCAAGAAAATGGGGGCTTTGGTCTTCACGCAGGCAATGAATGCGATTAACC
GCCAGCCGGTCGGTCAAAAGGTGGTGCAGGTACCGATAGATCTCTATGCCTCATCGCAGAGTGCTACTGATTGGCTGGCG
ACTCACAAAGACGGCTTACCTTAA

Upstream 100 bases:

>100_bases
GAGTCTGTGCCCCGTTGGATGGCAAACTGCGGTAAATCCCTCCGACGGGATAATAAAAATAGGCAGCAAGAGGTTAATGA
ACATTAACTGGAGAATAACG

Downstream 100 bases:

>100_bases
TGTCGGCGGCTACCCTGAGCGACAGGGCCTTAAACGAATTGGCGCAGCAACCGGTGGTGGCCCGTATTGAATCCGGGCAT
AAGCGTTACCCGGGGGTAGT

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MLLKNIKHMLLAITGGLIIFSAGAQAKNDKTTIGAIYLDTQGYYAGVRWGVQDGAAKGGGKIEIIETNAQGDVSKESSFI
DTMIARDVNAVVLSAVSVNGSVRAIKRANEANIPVICYNTCINEKGVDNYVYAYLVGDPYEFGKKLGNTAADYFIEKKIT
EPAIAVINCEAFEVCVQRRKGFEDALKAKVPGMKIVANQEGTVLDKAISVGEKLLISSGNVDAIFGESGGATLGAVKAVR
NQNKVGKTVVFGSDMTTEIAQELVNRQVLQAVVDISGKKMGALVFTQAMNAINRQPVGQKVVQVPIDLYASSQSATDWLA
THKDGLP

Sequences:

>Translated_327_residues
MLLKNIKHMLLAITGGLIIFSAGAQAKNDKTTIGAIYLDTQGYYAGVRWGVQDGAAKGGGKIEIIETNAQGDVSKESSFI
DTMIARDVNAVVLSAVSVNGSVRAIKRANEANIPVICYNTCINEKGVDNYVYAYLVGDPYEFGKKLGNTAADYFIEKKIT
EPAIAVINCEAFEVCVQRRKGFEDALKAKVPGMKIVANQEGTVLDKAISVGEKLLISSGNVDAIFGESGGATLGAVKAVR
NQNKVGKTVVFGSDMTTEIAQELVNRQVLQAVVDISGKKMGALVFTQAMNAINRQPVGQKVVQVPIDLYASSQSATDWLA
THKDGLP
>Mature_327_residues
MLLKNIKHMLLAITGGLIIFSAGAQAKNDKTTIGAIYLDTQGYYAGVRWGVQDGAAKGGGKIEIIETNAQGDVSKESSFI
DTMIARDVNAVVLSAVSVNGSVRAIKRANEANIPVICYNTCINEKGVDNYVYAYLVGDPYEFGKKLGNTAADYFIEKKIT
EPAIAVINCEAFEVCVQRRKGFEDALKAKVPGMKIVANQEGTVLDKAISVGEKLLISSGNVDAIFGESGGATLGAVKAVR
NQNKVGKTVVFGSDMTTEIAQELVNRQVLQAVVDISGKKMGALVFTQAMNAINRQPVGQKVVQVPIDLYASSQSATDWLA
THKDGLP

Specific function: Probably part of the binding-protein-dependent transport system yphDEF [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788898, Length=325, Percent_Identity=68.9230769230769, Blast_Score=464, Evalue=1e-132,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 34838; Mature: 34838

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKNIKHMLLAITGGLIIFSAGAQAKNDKTTIGAIYLDTQGYYAGVRWGVQDGAAKGGG
CCHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCC
KIEIIETNAQGDVSKESSFIDTMIARDVNAVVLSAVSVNGSVRAIKRANEANIPVICYNT
EEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEECCCCCCCCCEEEEEC
CINEKGVDNYVYAYLVGDPYEFGKKLGNTAADYFIEKKITEPAIAVINCEAFEVCVQRRK
CCCCCCCCCEEEEEEECCHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHC
GFEDALKAKVPGMKIVANQEGTVLDKAISVGEKLLISSGNVDAIFGESGGATLGAVKAVR
CHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCEEEEECCCEEEEECCCCCCHHHHHHHHH
NQNKVGKTVVFGSDMTTEIAQELVNRQVLQAVVDISGKKMGALVFTQAMNAINRQPVGQK
CCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHH
VVQVPIDLYASSQSATDWLATHKDGLP
HHEECHHEEECCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MLLKNIKHMLLAITGGLIIFSAGAQAKNDKTTIGAIYLDTQGYYAGVRWGVQDGAAKGGG
CCHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCC
KIEIIETNAQGDVSKESSFIDTMIARDVNAVVLSAVSVNGSVRAIKRANEANIPVICYNT
EEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEECCCCCCCCCEEEEEC
CINEKGVDNYVYAYLVGDPYEFGKKLGNTAADYFIEKKITEPAIAVINCEAFEVCVQRRK
CCCCCCCCCEEEEEEECCHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHC
GFEDALKAKVPGMKIVANQEGTVLDKAISVGEKLLISSGNVDAIFGESGGATLGAVKAVR
CHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCEEEEECCCEEEEECCCCCCHHHHHHHHH
NQNKVGKTVVFGSDMTTEIAQELVNRQVLQAVVDISGKKMGALVFTQAMNAINRQPVGQK
CCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHH
VVQVPIDLYASSQSATDWLATHKDGLP
HHEECHHEEECCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 9298646 [H]