| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is torA [H]
Identifier: 157372451
GI number: 157372451
Start: 4675084
End: 4677597
Strand: Reverse
Name: torA [H]
Synonym: Spro_4218
Alternate gene names: 157372451
Gene position: 4677597-4675084 (Counterclockwise)
Preceding gene: 157372452
Following gene: 157372450
Centisome position: 85.85
GC content: 56.17
Gene sequence:
>2514_bases ATGGATATTCACGATTTCAACCCTTCTCGCCGACGGTTTATAGCCGGCGTACTGGCCGCGGGGACTGCCAGCATGCTGGG CCCCAATCCTCTACTCGGCAAGGTGTGGGCGGCAGGCGAAAGCCCTGAGCGCTGGATCCAGTCGGGATCGCATTTTGGGG CTTTTGAGGCCAAGGTGGTCAACGGCGAATGGATCGACACCCGCCCGTTCAAACACGATAAATATCCGTGCGATATGCTC AAGGCGGTGCGCGAAATCGTCTATAACCCGTCGCGAGTACGGTACCCCATGGTTCGGCTGGACTGGTTGCGCAAACGCGA GCTGTCCGACCGCAGCCAACGTGGCGATAACCGTTTTGTGCGTGTGAGTTGGGATCAGGCGCTGGACCTGGTCTATCAGG AGTTGGAGCGGGTGCAAAAAAACCATGGCTCATCCGGCGTGTTTACCGGGCTGGCCGATTGGCAGATGGTGGGCAAGTTG CATAAGGCCGGGGGCGCAATGGATCGCGGGCTTGGCCTTCATGGTAGCTATGTCACCACCGTAGGTGACTATTCGGCCGC GGCGGCGCAGGTGATCTTGCCCCACGTAATAGGATCATTGGAGGTGTATGAGCAGCAAACCTCGCTGCCTTTGGTGATTG AAAATACCCAGACCATCGTGCTGTGGGGCTGCGATCCGATCAAAAACCTGCAGATCGAATACCTGGTTCCCGATCACGAT CCCTTTGGCTACTGGCAGCAGATTAAAGAGCGCGTGCAACAAGGCAAAATACGGGTGATTAGCGTCGATCCGGTGTGCAG TAAAACGCAGAACTATCTCGGTTGCGAACAGTTGGCCTTGAACCCGCAGACGGACGTGGCCCTGATGCTGGGGCTGGCGC ATACGCTGTACCAGGAAAAACTCTATGACGCTTCATTTATCAAAGATTATTGCGTGGGTTTCGAGCAGTTTCTGCCTTAT TTGATGGGGGAGACGGATCAACAACCTAAAGACGCGGAGTGGGCCGCAGGCCTCTGTGGACTCACTCCCGAGCAGATCCG CGAATTTGCACGGCTGCTGGTCAAGGGGCGTACCCAGTTTATGGGGGGCTGGTGCGTTCAGCGCATGCATCACGGGGAAC AATACCCGTGGATGTTGGTGATACTGGCCAGCATGGTGGGGCAGATAGGCCTTCCTGGCGGCGGTGTCGGTTTTGGCTGG CATTACAACGGTGGTGGCACTGTGACCTCATTGGGCCCGGTACTTTCCGGATTAGGTAGTCTGTCCAACCCTCCTGCACC CATCCATGCCGCCGATTTCCGCGGCGCTTCCGAGCATATCCCCGTGGCACGTTTCATCGATTGCCTGCTCTCGCCCGGCA AGACCCTGGCGTTTAATGGTGAGACGCTCACCTATCCTGATATCAGGTTGGCGCTCTTTAGTGCTGCCAATCCGTTCCAT GCCCAACAGGATCGCAACCGAATGATCGAAGCCTGGAAGCGGCTGGAAACGGTGGTGGTGTTGGATCACCAATGGACGGC GTCCTGCCGTTTTGCCGATATTGTGCTGCCGGTGACCACGCGTTTTGAGCGTAACGATATCGAACAGTTCGGTACGCATT CCAACAAAGGGTTGATGGCGATTCGCCAGGTGGTGAAGCCGCAGTATGAGGCTCGCCACGACTTTGACGTGTTTAGCGAA CTCTGCAAGCGTTTTGGCCGCGATCAGGTTTACACCGAAAGGCGCAACGAGATGCAGTGGATCAAGGCTATCTATGAAGA AGGGGTGAAGCAGGGGGCCGCGATGGGAGTGAAGATGCCCAGTTTTTCCACCTTCTGGGATGGGGAAGGTTATATCGAAT ATCCGGCAGGCCAACCTTGGGTGCGTCACGGTGATTTTCGCGAACAACCCGACCTCTATCCTTTGGGGACGCCATCCGGC CTGATTGAAATCTACAGTAAGACCATTGCCGCTTTTAACTACCGGGAATGCCCTGGCCATCCGCTGTGGATGGAGCCTTT TGAACGCAGCCACGGAGGCAAAGGTTCAGAGAAATATCCGCTGCACCTGCAATCCTGCCACCCGGACAAGCGGCTGCATT CGCAACTGTGTTCCAGCGATAACTACCGCGCGACCTATGCTGTAGCGGGGCGTGAACCCTTATATATAGGCCCAGAGGAT GCTAAAGCTCGCGGTTTGAAAGCCGGTGACGTAGTACGCGTTTTTAATGCGCGCGGGCAAGTGCTTGCCGGGGTAGTCAT TAGTCCAGACTACTCACCTGGCGTTGTGCGTATCCATGAGGGGGCATGGTATTCCCCTCTGGTGGGGGGGAAAGCCGGAA CGCTTTGCACCTATGGCGATCCTAACGTCTTAAGTGCCGATATTGGAACGTCTCAATTGGCACAAGGGACTTCGGCTCAT TCTGCGTTGGTTCAGGTGGAGCTTTATCAGGGCGAGCTTCCGCCGGTAACGGGTTTCGGTGGGCCACAGGAAATTAAACC GGACACCAAAGAGGCCTCTCATGCCATTACTTAA
Upstream 100 bases:
>100_bases ACCGTCTCAGTTCGCAAGAAGAGCGAACCCTGCTGAAATATTTGCAAACCCACGCCAGTGATACCGCTGACAGCGCAAAA AAATAGAATAAGGAGTCATC
Downstream 100 bases:
>100_bases CGAGGTGGCCCGGCAACGGGCCATCATTTACCGTTGGTTTTCTCAGTTGCTGTTTCAGGAACTGTCTGACGAAGGGCTGC TCAGGCTACGAGACAAAGAG
Product: molybdopterin guanine dinucleotide-containing S/N-oxide reductase
Products: NA
Alternate protein names: TMAO reductase 1; Trimethylamine oxidase 1 [H]
Number of amino acids: Translated: 837; Mature: 837
Protein sequence:
>837_residues MDIHDFNPSRRRFIAGVLAAGTASMLGPNPLLGKVWAAGESPERWIQSGSHFGAFEAKVVNGEWIDTRPFKHDKYPCDML KAVREIVYNPSRVRYPMVRLDWLRKRELSDRSQRGDNRFVRVSWDQALDLVYQELERVQKNHGSSGVFTGLADWQMVGKL HKAGGAMDRGLGLHGSYVTTVGDYSAAAAQVILPHVIGSLEVYEQQTSLPLVIENTQTIVLWGCDPIKNLQIEYLVPDHD PFGYWQQIKERVQQGKIRVISVDPVCSKTQNYLGCEQLALNPQTDVALMLGLAHTLYQEKLYDASFIKDYCVGFEQFLPY LMGETDQQPKDAEWAAGLCGLTPEQIREFARLLVKGRTQFMGGWCVQRMHHGEQYPWMLVILASMVGQIGLPGGGVGFGW HYNGGGTVTSLGPVLSGLGSLSNPPAPIHAADFRGASEHIPVARFIDCLLSPGKTLAFNGETLTYPDIRLALFSAANPFH AQQDRNRMIEAWKRLETVVVLDHQWTASCRFADIVLPVTTRFERNDIEQFGTHSNKGLMAIRQVVKPQYEARHDFDVFSE LCKRFGRDQVYTERRNEMQWIKAIYEEGVKQGAAMGVKMPSFSTFWDGEGYIEYPAGQPWVRHGDFREQPDLYPLGTPSG LIEIYSKTIAAFNYRECPGHPLWMEPFERSHGGKGSEKYPLHLQSCHPDKRLHSQLCSSDNYRATYAVAGREPLYIGPED AKARGLKAGDVVRVFNARGQVLAGVVISPDYSPGVVRIHEGAWYSPLVGGKAGTLCTYGDPNVLSADIGTSQLAQGTSAH SALVQVELYQGELPPVTGFGGPQEIKPDTKEASHAIT
Sequences:
>Translated_837_residues MDIHDFNPSRRRFIAGVLAAGTASMLGPNPLLGKVWAAGESPERWIQSGSHFGAFEAKVVNGEWIDTRPFKHDKYPCDML KAVREIVYNPSRVRYPMVRLDWLRKRELSDRSQRGDNRFVRVSWDQALDLVYQELERVQKNHGSSGVFTGLADWQMVGKL HKAGGAMDRGLGLHGSYVTTVGDYSAAAAQVILPHVIGSLEVYEQQTSLPLVIENTQTIVLWGCDPIKNLQIEYLVPDHD PFGYWQQIKERVQQGKIRVISVDPVCSKTQNYLGCEQLALNPQTDVALMLGLAHTLYQEKLYDASFIKDYCVGFEQFLPY LMGETDQQPKDAEWAAGLCGLTPEQIREFARLLVKGRTQFMGGWCVQRMHHGEQYPWMLVILASMVGQIGLPGGGVGFGW HYNGGGTVTSLGPVLSGLGSLSNPPAPIHAADFRGASEHIPVARFIDCLLSPGKTLAFNGETLTYPDIRLALFSAANPFH AQQDRNRMIEAWKRLETVVVLDHQWTASCRFADIVLPVTTRFERNDIEQFGTHSNKGLMAIRQVVKPQYEARHDFDVFSE LCKRFGRDQVYTERRNEMQWIKAIYEEGVKQGAAMGVKMPSFSTFWDGEGYIEYPAGQPWVRHGDFREQPDLYPLGTPSG LIEIYSKTIAAFNYRECPGHPLWMEPFERSHGGKGSEKYPLHLQSCHPDKRLHSQLCSSDNYRATYAVAGREPLYIGPED AKARGLKAGDVVRVFNARGQVLAGVVISPDYSPGVVRIHEGAWYSPLVGGKAGTLCTYGDPNVLSADIGTSQLAQGTSAH SALVQVELYQGELPPVTGFGGPQEIKPDTKEASHAIT >Mature_837_residues MDIHDFNPSRRRFIAGVLAAGTASMLGPNPLLGKVWAAGESPERWIQSGSHFGAFEAKVVNGEWIDTRPFKHDKYPCDML KAVREIVYNPSRVRYPMVRLDWLRKRELSDRSQRGDNRFVRVSWDQALDLVYQELERVQKNHGSSGVFTGLADWQMVGKL HKAGGAMDRGLGLHGSYVTTVGDYSAAAAQVILPHVIGSLEVYEQQTSLPLVIENTQTIVLWGCDPIKNLQIEYLVPDHD PFGYWQQIKERVQQGKIRVISVDPVCSKTQNYLGCEQLALNPQTDVALMLGLAHTLYQEKLYDASFIKDYCVGFEQFLPY LMGETDQQPKDAEWAAGLCGLTPEQIREFARLLVKGRTQFMGGWCVQRMHHGEQYPWMLVILASMVGQIGLPGGGVGFGW HYNGGGTVTSLGPVLSGLGSLSNPPAPIHAADFRGASEHIPVARFIDCLLSPGKTLAFNGETLTYPDIRLALFSAANPFH AQQDRNRMIEAWKRLETVVVLDHQWTASCRFADIVLPVTTRFERNDIEQFGTHSNKGLMAIRQVVKPQYEARHDFDVFSE LCKRFGRDQVYTERRNEMQWIKAIYEEGVKQGAAMGVKMPSFSTFWDGEGYIEYPAGQPWVRHGDFREQPDLYPLGTPSG LIEIYSKTIAAFNYRECPGHPLWMEPFERSHGGKGSEKYPLHLQSCHPDKRLHSQLCSSDNYRATYAVAGREPLYIGPED AKARGLKAGDVVRVFNARGQVLAGVVISPDYSPGVVRIHEGAWYSPLVGGKAGTLCTYGDPNVLSADIGTSQLAQGTSAH SALVQVELYQGELPPVTGFGGPQEIKPDTKEASHAIT
Specific function: Reduces trimethylamine-N-oxide (TMAO) into trimethylamine; an anaerobic reaction coupled to energy-yielding reactions [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787231, Length=831, Percent_Identity=57.8820697954272, Blast_Score=998, Evalue=0.0, Organism=Escherichia coli, GI87081994, Length=822, Percent_Identity=42.3357664233577, Blast_Score=631, Evalue=0.0, Organism=Escherichia coli, GI145693196, Length=752, Percent_Identity=42.9521276595745, Blast_Score=595, Evalue=1e-171, Organism=Escherichia coli, GI87081797, Length=793, Percent_Identity=29.1298865069357, Blast_Score=273, Evalue=4e-74, Organism=Escherichia coli, GI1787870, Length=792, Percent_Identity=27.1464646464646, Blast_Score=251, Evalue=1e-67, Organism=Escherichia coli, GI171474008, Length=774, Percent_Identity=27.1317829457364, Blast_Score=241, Evalue=2e-64, Organism=Escherichia coli, GI3868721, Length=687, Percent_Identity=21.5429403202329, Blast_Score=106, Evalue=7e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006658 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006655 - InterPro: IPR006311 - InterPro: IPR011887 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.7.2.3 [H]
Molecular weight: Translated: 93214; Mature: 93214
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: PS00490 MOLYBDOPTERIN_PROK_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIHDFNPSRRRFIAGVLAAGTASMLGPNPLLGKVWAAGESPERWIQSGSHFGAFEAKVV CCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCHHHHCCCCCCHHHHHHCCCCCCCEEEEEE NGEWIDTRPFKHDKYPCDMLKAVREIVYNPSRVRYPMVRLDWLRKRELSDRSQRGDNRFV CCCEECCCCCCCCCCCHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCEE RVSWDQALDLVYQELERVQKNHGSSGVFTGLADWQMVGKLHKAGGAMDRGLGLHGSYVTT EEEHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCHHCCCCCCCCEEEE VGDYSAAAAQVILPHVIGSLEVYEQQTSLPLVIENTQTIVLWGCDPIKNLQIEYLVPDHD ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCCCEEEEECCCCC PFGYWQQIKERVQQGKIRVISVDPVCSKTQNYLGCEQLALNPQTDVALMLGLAHTLYQEK CCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHH LYDASFIKDYCVGFEQFLPYLMGETDQQPKDAEWAAGLCGLTPEQIREFARLLVKGRTQF HHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH MGGWCVQRMHHGEQYPWMLVILASMVGQIGLPGGGVGFGWHYNGGGTVTSLGPVLSGLGS HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCC LSNPPAPIHAADFRGASEHIPVARFIDCLLSPGKTLAFNGETLTYPDIRLALFSAANPFH CCCCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEEECCCCEEEEECCCCCCC AQQDRNRMIEAWKRLETVVVLDHQWTASCRFADIVLPVTTRFERNDIEQFGTHSNKGLMA CHHHHHHHHHHHHHHCEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCHHHH IRQVVKPQYEARHDFDVFSELCKRFGRDQVYTERRNEMQWIKAIYEEGVKQGAAMGVKMP HHHHHCCHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECC SFSTFWDGEGYIEYPAGQPWVRHGDFREQPDLYPLGTPSGLIEIYSKTIAAFNYRECPGH CCCCEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC PLWMEPFERSHGGKGSEKYPLHLQSCHPDKRLHSQLCSSDNYRATYAVAGREPLYIGPED CCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCEEECCCC AKARGLKAGDVVRVFNARGQVLAGVVISPDYSPGVVRIHEGAWYSPLVGGKAGTLCTYGD HHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEECCC PNVLSADIGTSQLAQGTSAHSALVQVELYQGELPPVTGFGGPQEIKPDTKEASHAIT CCEEEECCCHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCC >Mature Secondary Structure MDIHDFNPSRRRFIAGVLAAGTASMLGPNPLLGKVWAAGESPERWIQSGSHFGAFEAKVV CCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCHHHHCCCCCCHHHHHHCCCCCCCEEEEEE NGEWIDTRPFKHDKYPCDMLKAVREIVYNPSRVRYPMVRLDWLRKRELSDRSQRGDNRFV CCCEECCCCCCCCCCCHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCEE RVSWDQALDLVYQELERVQKNHGSSGVFTGLADWQMVGKLHKAGGAMDRGLGLHGSYVTT EEEHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCHHCCCCCCCCEEEE VGDYSAAAAQVILPHVIGSLEVYEQQTSLPLVIENTQTIVLWGCDPIKNLQIEYLVPDHD ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCCCEEEEECCCCC PFGYWQQIKERVQQGKIRVISVDPVCSKTQNYLGCEQLALNPQTDVALMLGLAHTLYQEK CCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHH LYDASFIKDYCVGFEQFLPYLMGETDQQPKDAEWAAGLCGLTPEQIREFARLLVKGRTQF HHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH MGGWCVQRMHHGEQYPWMLVILASMVGQIGLPGGGVGFGWHYNGGGTVTSLGPVLSGLGS HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCC LSNPPAPIHAADFRGASEHIPVARFIDCLLSPGKTLAFNGETLTYPDIRLALFSAANPFH CCCCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEEECCCCEEEEECCCCCCC AQQDRNRMIEAWKRLETVVVLDHQWTASCRFADIVLPVTTRFERNDIEQFGTHSNKGLMA CHHHHHHHHHHHHHHCEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCHHHH IRQVVKPQYEARHDFDVFSELCKRFGRDQVYTERRNEMQWIKAIYEEGVKQGAAMGVKMP HHHHHCCHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECC SFSTFWDGEGYIEYPAGQPWVRHGDFREQPDLYPLGTPSGLIEIYSKTIAAFNYRECPGH CCCCEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC PLWMEPFERSHGGKGSEKYPLHLQSCHPDKRLHSQLCSSDNYRATYAVAGREPLYIGPED CCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCEEECCCC AKARGLKAGDVVRVFNARGQVLAGVVISPDYSPGVVRIHEGAWYSPLVGGKAGTLCTYGD HHHCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEECCC PNVLSADIGTSQLAQGTSAHSALVQVELYQGELPPVTGFGGPQEIKPDTKEASHAIT CCEEEECCCHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]