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The map label for this gene is yqhC [H]

Identifier: 157372447

GI number: 157372447

Start: 4671106

End: 4672023

Strand: Reverse

Name: yqhC [H]

Synonym: Spro_4214

Alternate gene names: 157372447

Gene position: 4672023-4671106 (Counterclockwise)

Preceding gene: 157372450

Following gene: 157372444

Centisome position: 85.74

GC content: 56.86

Gene sequence:

>918_bases
GTGAGTGAAATCGATGAACTGCGCGGTCGGATGGCGCGCCAGGCGGCCGGCTTTGCCGAGAGCAACGGTTATACCCCTTC
GCCGGTGCCACTGGTGAAAATCCTCTATGTGGATCGCCATTGTCCGCGTCAGCCGGTGATGTACGAACCTGGGGTGGTGA
TCATTTTCCAGGGCCACAAAGTGGGTTACTGCGGCAATCGGGTGTTTCAGTACGATCCGCGTAACTATCTGTTGATGACG
GTACCGCTACCGTTCGAATGTGAAACCTTTGCCAGCCCGGAACTGCCGCTGGTGGGGCTGTCAGTGAATATCGATAGCCA
AATGCTGCAGGATCTGTTGATCGACATCGGCGATGACGACTACCTGATGAAACCGCGCAGAGAAAGCAGCGGGGTTAATC
TGGCCGAGCTGTCGGAAGAGTTGTTGTGCGCCACCGAACGCCTGCTGGACGTGATGGCCAAACCGCTCGATGCACGGGTA
TTGGGGCCGCAGATTGTGCGCGAAATTCTGTACCACGTGCTGCGTGGCAGCTGCGGAACGTCGTTGCAGGAACTGGTCAA
TCGCCATACCCACTTTAGCCAAATCGCCAAGGCGCTGCGACGCATCGAGAACCAATATGCCGACAGCCTCAACGTTGAGC
AGTTGGCGGGGGAGGTGAATATGAGTATTTCGGCGTTTCACCATAACTTTAAGGCGGTGACCAATACCTCGCCGTTGCAG
TATGTGAAGTCCTATCGGCTGCACAAGGCGCGTCTGCTGATGGTCCACGACGGCCTGAAGGCCAGCACCGCCGCGCTGCG
CGTCGGCTATGAGAGTGCTTCGCAGTTCAGTCGTGAATTCAAACGCTTCTTTGGCGTGACGCCAAGCGACGAAGTGGCCC
GACTGCGTGATAACCCTCCTTTAATGATGGAGGGCTAA

Upstream 100 bases:

>100_bases
TCCTGCCCGAGTCTTGCCTATTCCTACAAAACGTTGTAGAAAAGCAGAGTTTTAAACTATTATTTATGCCGAATTGTTCT
TAGTGTAAGAGGGTGTTTCC

Downstream 100 bases:

>100_bases
GCATGCAGCCGGGGCGGCTACTGCCGCCCGCAAGCCGATCAGGAAGAGGCGGCGCGCTTTTTACGCCAGATAACCAGCAT
GGCGCCCAGCAGCCCCACCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSEIDELRGRMARQAAGFAESNGYTPSPVPLVKILYVDRHCPRQPVMYEPGVVIIFQGHKVGYCGNRVFQYDPRNYLLMT
VPLPFECETFASPELPLVGLSVNIDSQMLQDLLIDIGDDDYLMKPRRESSGVNLAELSEELLCATERLLDVMAKPLDARV
LGPQIVREILYHVLRGSCGTSLQELVNRHTHFSQIAKALRRIENQYADSLNVEQLAGEVNMSISAFHHNFKAVTNTSPLQ
YVKSYRLHKARLLMVHDGLKASTAALRVGYESASQFSREFKRFFGVTPSDEVARLRDNPPLMMEG

Sequences:

>Translated_305_residues
MSEIDELRGRMARQAAGFAESNGYTPSPVPLVKILYVDRHCPRQPVMYEPGVVIIFQGHKVGYCGNRVFQYDPRNYLLMT
VPLPFECETFASPELPLVGLSVNIDSQMLQDLLIDIGDDDYLMKPRRESSGVNLAELSEELLCATERLLDVMAKPLDARV
LGPQIVREILYHVLRGSCGTSLQELVNRHTHFSQIAKALRRIENQYADSLNVEQLAGEVNMSISAFHHNFKAVTNTSPLQ
YVKSYRLHKARLLMVHDGLKASTAALRVGYESASQFSREFKRFFGVTPSDEVARLRDNPPLMMEG
>Mature_304_residues
SEIDELRGRMARQAAGFAESNGYTPSPVPLVKILYVDRHCPRQPVMYEPGVVIIFQGHKVGYCGNRVFQYDPRNYLLMTV
PLPFECETFASPELPLVGLSVNIDSQMLQDLLIDIGDDDYLMKPRRESSGVNLAELSEELLCATERLLDVMAKPLDARVL
GPQIVREILYHVLRGSCGTSLQELVNRHTHFSQIAKALRRIENQYADSLNVEQLAGEVNMSISAFHHNFKAVTNTSPLQY
VKSYRLHKARLLMVHDGLKASTAALRVGYESASQFSREFKRFFGVTPSDEVARLRDNPPLMMEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=268, Percent_Identity=64.1791044776119, Blast_Score=380, Evalue=1e-107,
Organism=Escherichia coli, GI1790339, Length=125, Percent_Identity=32, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34387; Mature: 34256

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIDELRGRMARQAAGFAESNGYTPSPVPLVKILYVDRHCPRQPVMYEPGVVIIFQGHK
CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEECCCCCCCCCEECCCEEEEECCCE
VGYCGNRVFQYDPRNYLLMTVPLPFECETFASPELPLVGLSVNIDSQMLQDLLIDIGDDD
EECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCC
YLMKPRRESSGVNLAELSEELLCATERLLDVMAKPLDARVLGPQIVREILYHVLRGSCGT
CEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCH
SLQELVNRHTHFSQIAKALRRIENQYADSLNVEQLAGEVNMSISAFHHNFKAVTNTSPLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCHHHHCCCCHHH
YVKSYRLHKARLLMVHDGLKASTAALRVGYESASQFSREFKRFFGVTPSDEVARLRDNPP
HHHHHHHHHHEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC
LMMEG
CEECC
>Mature Secondary Structure 
SEIDELRGRMARQAAGFAESNGYTPSPVPLVKILYVDRHCPRQPVMYEPGVVIIFQGHK
CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEECCCCCCCCCEECCCEEEEECCCE
VGYCGNRVFQYDPRNYLLMTVPLPFECETFASPELPLVGLSVNIDSQMLQDLLIDIGDDD
EECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCC
YLMKPRRESSGVNLAELSEELLCATERLLDVMAKPLDARVLGPQIVREILYHVLRGSCGT
CEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCH
SLQELVNRHTHFSQIAKALRRIENQYADSLNVEQLAGEVNMSISAFHHNFKAVTNTSPLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCHHHHCCCCHHH
YVKSYRLHKARLLMVHDGLKASTAALRVGYESASQFSREFKRFFGVTPSDEVARLRDNPP
HHHHHHHHHHEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC
LMMEG
CEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]