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The map label for this gene is traC [H]

Identifier: 157372357

GI number: 157372357

Start: 4578801

End: 4579808

Strand: Reverse

Name: traC [H]

Synonym: Spro_4123

Alternate gene names: 157372357

Gene position: 4579808-4578801 (Counterclockwise)

Preceding gene: 157372358

Following gene: 157372356

Centisome position: 84.05

GC content: 59.23

Gene sequence:

>1008_bases
ATGAAAAAAACATCATCACGTCGGCTGGCAAAAGCCCGTCGAGAACGTCCCGACTTGTATCAACAGGTGACGGACAAAAT
CATTGCCGCCATCGAGACGGGAACCTTGCCCTGGCGCAAACCCTGGCGGACCGACAAGGCCCGCGACGCGTCGACAGCCA
TCATGCCGCAGAACGGTACGACCGGTTACTGCTACAGCGGCGTGAATGTGCTGCTTTTGTGGATGGCCGCGGACGAAGGG
GGATTTCACTCCAATCGCTGGCTCACCTACAAGCAGGCGGAAGCCGTCGGCGGCCATGTGCGTGCCGGCGAAACCGCGAC
CCTGGCCGTGGTATTCAAACCCTGGGACAAGCAGGTGGAGGATGCTGACGGCCAGCAGCTGTTTGACGAGGACGGGAACC
CGCTGAAAACGCGAATACCCATGCTGAAGCCGCTGTACTTGTTTAACGTTGCCCAGTGCGACAACCTCCCGGAAACCGTT
GTCGGTATTACGCCGGCAGAGGAGCAGGAAGCGGATGGGGCGTTGGTCGATGCGAAAACGCAGGCTCGGGTCAACACGCT
CGTTGATGCCTGTGGCGTTCGGCTCGAGCAGGTTTACCAGAACAGGGCATTTTACTCCCCGATCCGCGACCAGATTGTCT
TGCCGCAGGTTCAGCAATTTCGAACCGAGGCGGATTACTGGTCGACGTTATTGCATGAACTGGTGCACAGCACCGGTCAT
GCAACACGGCTCAACCGGGAGGGGATCACGTCTTCCTCCCGGGCGTTTGGTGACCCGGTATACGCGTTCGAAGAACTGGT
GGCGGAGCTGGGCAGTGCTTTTATGTGCGCACAGCTTGGCGTCTTTGGCGACGTTCAGCACGACAGCTACCTCGAACACT
GGCTCAAGGTATTACGTGAGGATAAGCGCGCGCTGTTTCGTGCGGCCAAACAGGCCCGCGAGGCGTCAGAGTTTTTGCTG
AAGCCCCTGGCGGAACCGGTGACTACCGATACCGCCGTTGCGGCATGA

Upstream 100 bases:

>100_bases
GGGGCGCTGCGTTACCCAGCTTTCTAACTACTTTTCTGTCCCCTGAGGCGTATTCTTCGCCGCCAGGGGAGGAATGCGCC
TTTTTTACGAGGAGCACTCC

Downstream 100 bases:

>100_bases
GGAGTCAGATGATGACTATTGAACAGTGTTATTGGCAGATCATTGCCGGCAGGTTACTGGCCAAATACTTTGGCCTGGCG
TTAAACGATACCGATTTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MKKTSSRRLAKARRERPDLYQQVTDKIIAAIETGTLPWRKPWRTDKARDASTAIMPQNGTTGYCYSGVNVLLLWMAADEG
GFHSNRWLTYKQAEAVGGHVRAGETATLAVVFKPWDKQVEDADGQQLFDEDGNPLKTRIPMLKPLYLFNVAQCDNLPETV
VGITPAEEQEADGALVDAKTQARVNTLVDACGVRLEQVYQNRAFYSPIRDQIVLPQVQQFRTEADYWSTLLHELVHSTGH
ATRLNREGITSSSRAFGDPVYAFEELVAELGSAFMCAQLGVFGDVQHDSYLEHWLKVLREDKRALFRAAKQAREASEFLL
KPLAEPVTTDTAVAA

Sequences:

>Translated_335_residues
MKKTSSRRLAKARRERPDLYQQVTDKIIAAIETGTLPWRKPWRTDKARDASTAIMPQNGTTGYCYSGVNVLLLWMAADEG
GFHSNRWLTYKQAEAVGGHVRAGETATLAVVFKPWDKQVEDADGQQLFDEDGNPLKTRIPMLKPLYLFNVAQCDNLPETV
VGITPAEEQEADGALVDAKTQARVNTLVDACGVRLEQVYQNRAFYSPIRDQIVLPQVQQFRTEADYWSTLLHELVHSTGH
ATRLNREGITSSSRAFGDPVYAFEELVAELGSAFMCAQLGVFGDVQHDSYLEHWLKVLREDKRALFRAAKQAREASEFLL
KPLAEPVTTDTAVAA
>Mature_335_residues
MKKTSSRRLAKARRERPDLYQQVTDKIIAAIETGTLPWRKPWRTDKARDASTAIMPQNGTTGYCYSGVNVLLLWMAADEG
GFHSNRWLTYKQAEAVGGHVRAGETATLAVVFKPWDKQVEDADGQQLFDEDGNPLKTRIPMLKPLYLFNVAQCDNLPETV
VGITPAEEQEADGALVDAKTQARVNTLVDACGVRLEQVYQNRAFYSPIRDQIVLPQVQQFRTEADYWSTLLHELVHSTGH
ATRLNREGITSSSRAFGDPVYAFEELVAELGSAFMCAQLGVFGDVQHDSYLEHWLKVLREDKRALFRAAKQAREASEFLL
KPLAEPVTTDTAVAA

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG4227

COG function: function code L; Antirestriction protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 37472; Mature: 37472

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTSSRRLAKARRERPDLYQQVTDKIIAAIETGTLPWRKPWRTDKARDASTAIMPQNGT
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCC
TGYCYSGVNVLLLWMAADEGGFHSNRWLTYKQAEAVGGHVRAGETATLAVVFKPWDKQVE
CCEEECCCEEEEEEEECCCCCCCCCCEEEEHHHHHCCCCEECCCCEEEEEEECCCCCCCC
DADGQQLFDEDGNPLKTRIPMLKPLYLFNVAQCDNLPETVVGITPAEEQEADGALVDAKT
CCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHCCCCHHHEECCCCCCCCCCCCEECCHH
QARVNTLVDACGVRLEQVYQNRAFYSPIRDQIVLPQVQQFRTEADYWSTLLHELVHSTGH
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHHHHCCCC
ATRLNREGITSSSRAFGDPVYAFEELVAELGSAFMCAQLGVFGDVQHDSYLEHWLKVLRE
CCCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
DKRALFRAAKQAREASEFLLKPLAEPVTTDTAVAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC
>Mature Secondary Structure
MKKTSSRRLAKARRERPDLYQQVTDKIIAAIETGTLPWRKPWRTDKARDASTAIMPQNGT
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCC
TGYCYSGVNVLLLWMAADEGGFHSNRWLTYKQAEAVGGHVRAGETATLAVVFKPWDKQVE
CCEEECCCEEEEEEEECCCCCCCCCCEEEEHHHHHCCCCEECCCCEEEEEEECCCCCCCC
DADGQQLFDEDGNPLKTRIPMLKPLYLFNVAQCDNLPETVVGITPAEEQEADGALVDAKT
CCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHCCCCHHHEECCCCCCCCCCCCEECCHH
QARVNTLVDACGVRLEQVYQNRAFYSPIRDQIVLPQVQQFRTEADYWSTLLHELVHSTGH
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHHHHCCCC
ATRLNREGITSSSRAFGDPVYAFEELVAELGSAFMCAQLGVFGDVQHDSYLEHWLKVLRE
CCCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
DKRALFRAAKQAREASEFLLKPLAEPVTTDTAVAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]