Click here to switch to the map view.

The map label for this gene is yqfA [H]

Identifier: 157372134

GI number: 157372134

Start: 4320050

End: 4320724

Strand: Reverse

Name: yqfA [H]

Synonym: Spro_3900

Alternate gene names: 157372134

Gene position: 4320724-4320050 (Counterclockwise)

Preceding gene: 157372136

Following gene: 157372132

Centisome position: 79.3

GC content: 55.41

Gene sequence:

>675_bases
ATGGGAAAAACGGGCGTAGTGAAAGCCGGTACTGAAAAAATGGCCGCCACGGCCTATCCGTGGGCGGAAGAAATCGCTAA
CAGCATCAGTCACGGTATAGGGTTGGTTTTTGGTATTGTCGGCCTGGTACTGTTGTTGGTTCAGGCGGTAGACACCGGCG
CTGACGTAACGGCCATCGCCAGCTACAGCCTTTATGGCGGCAGCATGATCCTGCTGTTCCTGGCCTCCACGCTGTACCAT
GCCATTCCCCACCAGAAAGCCAAGCACTGGCTGAAAAAATTTGACCACTGCGCCATTTATCTTTTGATTGCCGGTACCTA
CACGCCGTTTCTGTTGGTGGGGCTGAACTCACCGTTGGCCAAGGGGTTGATGGCGGTAATTTGGGGTTTGGCGCTGCTGG
GCGTGTTGTTCAAACTGGCGTTCGCACACCGGTTTGAAGCGCTCTCGCTGGTGACCTATCTGACCATGGGTTGGCTGTCG
CTGATCGTGATTTATCAGTTGGCAACTCGTTTGGCGCTGGGCGGTGTGACGCTGCTGGCGGTCGGTGGCGTGGTTTATAC
CCTGGGCGTGATCTTCTATGCATCGAAGCGTTTCCGCTTCGGCCACGCCATTTGGCATGGTTTCGTGCTCGGTGGCAGCC
TGTGCCACTTTATGGCGATTTATCTGTACGTCTGA

Upstream 100 bases:

>100_bases
AGTTTTATTTTAGCGTACACGTGTACACTGAAATTATTCTCAGTTAAGCTGCCTTGCGGTAATTTCGAACAATGTTGGCT
GTTTTGAGGGGTTGTGTGCA

Downstream 100 bases:

>100_bases
TACCCGCTGATATCTTTCGCACTGCAGCGTTGTTGGCTGCAGTGCGAAATCTATTGCAGACAGACCAGGAAGCTCTGACT
GCTCCCTTCTTTATTTCTCT

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MGKTGVVKAGTEKMAATAYPWAEEIANSISHGIGLVFGIVGLVLLLVQAVDTGADVTAIASYSLYGGSMILLFLASTLYH
AIPHQKAKHWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLAKGLMAVIWGLALLGVLFKLAFAHRFEALSLVTYLTMGWLS
LIVIYQLATRLALGGVTLLAVGGVVYTLGVIFYASKRFRFGHAIWHGFVLGGSLCHFMAIYLYV

Sequences:

>Translated_224_residues
MGKTGVVKAGTEKMAATAYPWAEEIANSISHGIGLVFGIVGLVLLLVQAVDTGADVTAIASYSLYGGSMILLFLASTLYH
AIPHQKAKHWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLAKGLMAVIWGLALLGVLFKLAFAHRFEALSLVTYLTMGWLS
LIVIYQLATRLALGGVTLLAVGGVVYTLGVIFYASKRFRFGHAIWHGFVLGGSLCHFMAIYLYV
>Mature_223_residues
GKTGVVKAGTEKMAATAYPWAEEIANSISHGIGLVFGIVGLVLLLVQAVDTGADVTAIASYSLYGGSMILLFLASTLYHA
IPHQKAKHWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLAKGLMAVIWGLALLGVLFKLAFAHRFEALSLVTYLTMGWLSL
IVIYQLATRLALGGVTLLAVGGVVYTLGVIFYASKRFRFGHAIWHGFVLGGSLCHFMAIYLYV

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=219, Percent_Identity=31.0502283105023, Blast_Score=100, Evalue=8e-22,
Organism=Homo sapiens, GI52630445, Length=210, Percent_Identity=32.3809523809524, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI154759277, Length=243, Percent_Identity=27.9835390946502, Blast_Score=87, Evalue=8e-18,
Organism=Escherichia coli, GI1789266, Length=214, Percent_Identity=78.9719626168224, Blast_Score=340, Evalue=5e-95,
Organism=Caenorhabditis elegans, GI71996356, Length=251, Percent_Identity=31.4741035856574, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24640324, Length=223, Percent_Identity=29.5964125560538, Blast_Score=83, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24155; Mature: 24024

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKTGVVKAGTEKMAATAYPWAEEIANSISHGIGLVFGIVGLVLLLVQAVDTGADVTAIA
CCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
SYSLYGGSMILLFLASTLYHAIPHQKAKHWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCHHH
KGLMAVIWGLALLGVLFKLAFAHRFEALSLVTYLTMGWLSLIVIYQLATRLALGGVTLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGVVYTLGVIFYASKRFRFGHAIWHGFVLGGSLCHFMAIYLYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GKTGVVKAGTEKMAATAYPWAEEIANSISHGIGLVFGIVGLVLLLVQAVDTGADVTAIA
CCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
SYSLYGGSMILLFLASTLYHAIPHQKAKHWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCHHH
KGLMAVIWGLALLGVLFKLAFAHRFEALSLVTYLTMGWLSLIVIYQLATRLALGGVTLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGVVYTLGVIFYASKRFRFGHAIWHGFVLGGSLCHFMAIYLYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]