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The map label for this gene is ppdB [H]

Identifier: 157372054

GI number: 157372054

Start: 4226742

End: 4227320

Strand: Reverse

Name: ppdB [H]

Synonym: Spro_3819

Alternate gene names: 157372054

Gene position: 4227320-4226742 (Counterclockwise)

Preceding gene: 157372055

Following gene: 157372053

Centisome position: 77.58

GC content: 60.97

Gene sequence:

>579_bases
ATGCCAGCTCTAGCGCGCGGTTTTACCTTGCCGGAGGTGATGCTGGCGCTGACGTTTGGCAGCCTGATTGCGTTGGCGGC
GGCTAAAACTTATCCGGTCTTGCGTCAGCACAGTGTCGATGTTGGTCGGCATTATCGGCTGGAATCGGTGCTGCGGCAGT
TAGCCTTTGGCATTGAGAAGGATCTGCGCCGCGCCGGCTTCTGTGCCGGCCAGTGCCAGGGGCAACCGCTGTTGATTAGC
CGGGCGGGTGGGGAGGCCGTGGGCAGTTGCGTGATAGTCGCCTATGACATCACCCGCAGTGGGCGCTGGGAAACTCTTGG
CGCTGACGCCGGATACTTCGGTTACCGCTTACGGCAAGGCATGCTGGAGGGGCAACGTGGGGTGAGACACTGCCATGGCG
CTGGCTGGGAGCGTCTGCTCGATAACGACGAAGTGCGCATTGAAGCCTTCAGCATCAAGGTGAAAGCGGGCGAAGGCGGT
AAACGCTGGGTAACGCTGACCTTGAGTGGCCGTTCAAAAGCGGATGGCGGCATACGGCGCAGTCTGCAGTGGGCGGTTAA
TATGGCCTCGCTGCCATGA

Upstream 100 bases:

>100_bases
TCTTGCTCAGCAATGGCGCTGGCCGCCTGCGGTTGGTGCTGTCTGCCAAGGGGCGGCTACGGTTATGCAGTGAAGGCGCG
AGCATAAGAGGGATTACGAC

Downstream 100 bases:

>100_bases
GCGCTGCCGGGCAGCGGGGAGGCAGCACTCTGGCGGCGGTGATGATGCTGTTGGTGATGGGGCTGATGCTGTTGAATGCC
CAGCATCGCCAACTCGACAG

Product: putative prepilin peptidase dependent protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MPALARGFTLPEVMLALTFGSLIALAAAKTYPVLRQHSVDVGRHYRLESVLRQLAFGIEKDLRRAGFCAGQCQGQPLLIS
RAGGEAVGSCVIVAYDITRSGRWETLGADAGYFGYRLRQGMLEGQRGVRHCHGAGWERLLDNDEVRIEAFSIKVKAGEGG
KRWVTLTLSGRSKADGGIRRSLQWAVNMASLP

Sequences:

>Translated_192_residues
MPALARGFTLPEVMLALTFGSLIALAAAKTYPVLRQHSVDVGRHYRLESVLRQLAFGIEKDLRRAGFCAGQCQGQPLLIS
RAGGEAVGSCVIVAYDITRSGRWETLGADAGYFGYRLRQGMLEGQRGVRHCHGAGWERLLDNDEVRIEAFSIKVKAGEGG
KRWVTLTLSGRSKADGGIRRSLQWAVNMASLP
>Mature_191_residues
PALARGFTLPEVMLALTFGSLIALAAAKTYPVLRQHSVDVGRHYRLESVLRQLAFGIEKDLRRAGFCAGQCQGQPLLISR
AGGEAVGSCVIVAYDITRSGRWETLGADAGYFGYRLRQGMLEGQRGVRHCHGAGWERLLDNDEVRIEAFSIKVKAGEGGK
RWVTLTLSGRSKADGGIRRSLQWAVNMASLP

Specific function: Not yet known [H]

COG id: COG4795

COG function: function code U; Type II secretory pathway, component PulJ

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789189, Length=176, Percent_Identity=31.8181818181818, Blast_Score=101, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR016419
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 20944; Mature: 20813

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALARGFTLPEVMLALTFGSLIALAAAKTYPVLRQHSVDVGRHYRLESVLRQLAFGIEK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
DLRRAGFCAGQCQGQPLLISRAGGEAVGSCVIVAYDITRSGRWETLGADAGYFGYRLRQG
HHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCEECCCCCCHHHHHHHHH
MLEGQRGVRHCHGAGWERLLDNDEVRIEAFSIKVKAGEGGKRWVTLTLSGRSKADGGIRR
HHHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCHHHH
SLQWAVNMASLP
HHHHHEECCCCC
>Mature Secondary Structure 
PALARGFTLPEVMLALTFGSLIALAAAKTYPVLRQHSVDVGRHYRLESVLRQLAFGIEK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
DLRRAGFCAGQCQGQPLLISRAGGEAVGSCVIVAYDITRSGRWETLGADAGYFGYRLRQG
HHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCEECCCCCCHHHHHHHHH
MLEGQRGVRHCHGAGWERLLDNDEVRIEAFSIKVKAGEGGKRWVTLTLSGRSKADGGIRR
HHHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCHHHH
SLQWAVNMASLP
HHHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814 [H]