Definition | Serratia proteamaculans 568 chromosome, complete genome. |
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Accession | NC_009832 |
Length | 5,448,853 |
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The map label for this gene is yoaV [H]
Identifier: 157371633
GI number: 157371633
Start: 3754969
End: 3755892
Strand: Reverse
Name: yoaV [H]
Synonym: Spro_3396
Alternate gene names: 157371633
Gene position: 3755892-3754969 (Counterclockwise)
Preceding gene: 157371634
Following gene: 157371632
Centisome position: 68.93
GC content: 50.32
Gene sequence:
>924_bases ATGAGTGCCAGAAAAAACATAGATAGCAGAGCTGCCGCCGCCATGATGATGATATGCGCCATATGGGGGCTGCAGCAGGT GGCGATCAAGGCCGCCGAGCCGGACATTTCTGCCGTACTGCAAATCGCCATTCGGTCGGGCATTGCCGCTTTGGCGGTTT ATCTCCTGGCGCGTTACCGTCGCGAAAAGTTCGTATTTGATCGCCCCACGCTGTTAGCAGGTCTGTGCGTCGGTTTTTTT TTCGCGTTGGAATTCTTCTTTGTTTCCGAAGGGTTGCGCTATACCAGTGCATCGCATATGGCGGTATTTTTGTATACAGC CCCCTTGTTTTCCGCCATCGGGCTGCATTTTGTTATCCGCCATGAGCGGCTGTCGTTGATACAATGGGTCGGTATTGCCA TCGCCTTTGGCGGCGTGGTGCTCGCCATCTCCGGTATGAGTGACAGTTCGGGCGCAGAGAACTCATTGCGTGGCGATATT TACGGGCTGTTGGCGGGAATGTCATGGGGCGGCTCAACCATTGTCATTCGCACTACCGGGTTGGCAAACTGCTCATCAAA ACAAACATTATTGTTTCAGCTCTCGGGAGCCTGCATTTTGTTATCTCTGCTGGCGATAACCACGCAGAGCGTTCATTTCA ACCTGACGGCATTGGCCTGGACCAGCCTGATATTCCAAACGCTGGTGGTTTCTTTTATCAGCTATTTGATCTGGTTTTCT CTGCTGCGTCATTATCAGGCGTCCTCGTTGGGCATTCTGACCTTTATGACGCCCGTTTTTGGTATTTTAGCCGGGGTAGT GATATTGGGGGAGCCGCTGCAGATTGAGTTTGTATTGGGTTCTGTCCTGATCGTTTTAGGTTTGATTGTCGTGAGCTGTT CTTATTTATTTTATCTCAACAGAGGGATTGTACCTAAAATATAA
Upstream 100 bases:
>100_bases TAAAGACTAACCTTTTATATTTTTCTCGGATTTATCCATCACCTTTTTATTAGCGGTGAGGGAAGGGTGTGTTTTTATTT AAGCGGCTTGAGGTGGTGTG
Downstream 100 bases:
>100_bases ACTATGGATGTTGATGTTAATACCTATCAAATAAGTTGTGAAAGCCAATTCACCATCACTATGCAAATATCGAAATATGC CTGGGGTTATCCTTTGATCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MSARKNIDSRAAAAMMMICAIWGLQQVAIKAAEPDISAVLQIAIRSGIAALAVYLLARYRREKFVFDRPTLLAGLCVGFF FALEFFFVSEGLRYTSASHMAVFLYTAPLFSAIGLHFVIRHERLSLIQWVGIAIAFGGVVLAISGMSDSSGAENSLRGDI YGLLAGMSWGGSTIVIRTTGLANCSSKQTLLFQLSGACILLSLLAITTQSVHFNLTALAWTSLIFQTLVVSFISYLIWFS LLRHYQASSLGILTFMTPVFGILAGVVILGEPLQIEFVLGSVLIVLGLIVVSCSYLFYLNRGIVPKI
Sequences:
>Translated_307_residues MSARKNIDSRAAAAMMMICAIWGLQQVAIKAAEPDISAVLQIAIRSGIAALAVYLLARYRREKFVFDRPTLLAGLCVGFF FALEFFFVSEGLRYTSASHMAVFLYTAPLFSAIGLHFVIRHERLSLIQWVGIAIAFGGVVLAISGMSDSSGAENSLRGDI YGLLAGMSWGGSTIVIRTTGLANCSSKQTLLFQLSGACILLSLLAITTQSVHFNLTALAWTSLIFQTLVVSFISYLIWFS LLRHYQASSLGILTFMTPVFGILAGVVILGEPLQIEFVLGSVLIVLGLIVVSCSYLFYLNRGIVPKI >Mature_306_residues SARKNIDSRAAAAMMMICAIWGLQQVAIKAAEPDISAVLQIAIRSGIAALAVYLLARYRREKFVFDRPTLLAGLCVGFFF ALEFFFVSEGLRYTSASHMAVFLYTAPLFSAIGLHFVIRHERLSLIQWVGIAIAFGGVVLAISGMSDSSGAENSLRGDIY GLLAGMSWGGSTIVIRTTGLANCSSKQTLLFQLSGACILLSLLAITTQSVHFNLTALAWTSLIFQTLVVSFISYLIWFSL LRHYQASSLGILTFMTPVFGILAGVVILGEPLQIEFVLGSVLIVLGLIVVSCSYLFYLNRGIVPKI
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 33296; Mature: 33165
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSARKNIDSRAAAAMMMICAIWGLQQVAIKAAEPDISAVLQIAIRSGIAALAVYLLARYR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH REKFVFDRPTLLAGLCVGFFFALEFFFVSEGLRYTSASHMAVFLYTAPLFSAIGLHFVIR HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH HERLSLIQWVGIAIAFGGVVLAISGMSDSSGAENSLRGDIYGLLAGMSWGGSTIVIRTTG HHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECC LANCSSKQTLLFQLSGACILLSLLAITTQSVHFNLTALAWTSLIFQTLVVSFISYLIWFS CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHH LLRHYQASSLGILTFMTPVFGILAGVVILGEPLQIEFVLGSVLIVLGLIVVSCSYLFYLN HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC RGIVPKI CCCCCCC >Mature Secondary Structure SARKNIDSRAAAAMMMICAIWGLQQVAIKAAEPDISAVLQIAIRSGIAALAVYLLARYR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH REKFVFDRPTLLAGLCVGFFFALEFFFVSEGLRYTSASHMAVFLYTAPLFSAIGLHFVIR HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH HERLSLIQWVGIAIAFGGVVLAISGMSDSSGAENSLRGDIYGLLAGMSWGGSTIVIRTTG HHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECC LANCSSKQTLLFQLSGACILLSLLAITTQSVHFNLTALAWTSLIFQTLVVSFISYLIWFS CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHH LLRHYQASSLGILTFMTPVFGILAGVVILGEPLQIEFVLGSVLIVLGLIVVSCSYLFYLN HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC RGIVPKI CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]