Click here to switch to the map view.

The map label for this gene is ompC [H]

Identifier: 157371501

GI number: 157371501

Start: 3599191

End: 3600303

Strand: Reverse

Name: ompC [H]

Synonym: Spro_3264

Alternate gene names: 157371501

Gene position: 3600303-3599191 (Counterclockwise)

Preceding gene: 157371505

Following gene: 157371500

Centisome position: 66.07

GC content: 51.3

Gene sequence:

>1113_bases
ATGAAACTTCGAGTACTCTCCCTGATAGTACCCGCACTGCTGGTTGCAGGCACAGCAGGCGCGGCGGAAATCTACAACAA
AGACGGTAATAAACTGGATTTGTTCGGTAAAATCGATGGTCTTCACTATTTTTCCGATGATAAAGGTTCCGATGGCGACC
AGTCTTATATGCGTTTTGGTCTGCGTGGCGAAACACAAATCAGTGACCAACTGACCGGCTACGGTGAGTGGGAATATCAG
GCAAACCTCAACCGTGCGGAAAACCAGGACAACAATAACTTCACTCGTGTTGGTTTTGCAGGTTTGAAATTCAGTGATTA
CGGTTCATTGGATTACGGCCGTAACTACGGCGTGCTGTACGACATCGGCGCATGGACCGACGTGCTGCCAGAGTTCGGTG
GCGATACCTACGGTGCGGACAACTTCATGTTCCAGCGTACCAACGGCGTGCTGACTTACCGTAACTCAGACTTCTTTGGT
CTGGTTGACGGCCTGAACTTTGCTCTGCAATACCAGGGCAAAAACGACAGCGCTACCGAATCCAACAACGGTCGTGACGT
GTTGGCGCAGAACGGTGACGGTTACGGCATGTCCGCGTCTTACGATCTGGGCTACGGTATCAGCGCTGCAGCGGCGTACT
TCTCTTCCGACCGTACCAACGATCAGAACGGCAATAACAACGCCGGCATTCTGGGCCGTGGTGACAAGGCAGAGGCTTAC
AGCGGCGGTCTGAAATATGACGCCAACAACGTCTACCTGGCAGCGATGTATACTCAGTCTTACAACGCAACCCGTTTCGG
CAGCAGCAACAGCAGCACTTACGGTTACGCCAACAAAGCGCAAAACATGGAAATCGTTGCCCAGTACCAGTTCGATTTCG
GTCTGCGTCCTTCCGTGGCTTACCTGCAGTCTAAAGGCAAAGACATCGAACGCGGTTACGGCGATCAGGATCTGATGAAG
TATGTTGATGTGGGCGCGACCTACTACTTCAACAAAAACATGTCTACCTACGTTGATTACAAAATCAACCTGATGGATGA
AAATGACTTCACCAAGTCTGCCGGTATCAACACCGACGACGTGGTTGCCGTGGGCCTGGTTTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TAATATAACCCTTGTTACCAGAATGGTAATGCACAGTCGTGCTAATAATGCTCAAAAGGGCAGTGGCCATAGCTCGACAT
AATTAATGAGGATAATAACG

Downstream 100 bases:

>100_bases
GCAACAGAGTGTGAATCTGATCACGCGGCCTTCGGGCCGCGTTTTTTTTGCCTGCGGTTTGGCACAAATTGGCATTTTCG
CGGCACGGATTGCCATCCTG

Product: outer membrane porin protein C

Products: NA

Alternate protein names: Porin ompC [H]

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MKLRVLSLIVPALLVAGTAGAAEIYNKDGNKLDLFGKIDGLHYFSDDKGSDGDQSYMRFGLRGETQISDQLTGYGEWEYQ
ANLNRAENQDNNNFTRVGFAGLKFSDYGSLDYGRNYGVLYDIGAWTDVLPEFGGDTYGADNFMFQRTNGVLTYRNSDFFG
LVDGLNFALQYQGKNDSATESNNGRDVLAQNGDGYGMSASYDLGYGISAAAAYFSSDRTNDQNGNNNAGILGRGDKAEAY
SGGLKYDANNVYLAAMYTQSYNATRFGSSNSSTYGYANKAQNMEIVAQYQFDFGLRPSVAYLQSKGKDIERGYGDQDLMK
YVDVGATYYFNKNMSTYVDYKINLMDENDFTKSAGINTDDVVAVGLVYQF

Sequences:

>Translated_370_residues
MKLRVLSLIVPALLVAGTAGAAEIYNKDGNKLDLFGKIDGLHYFSDDKGSDGDQSYMRFGLRGETQISDQLTGYGEWEYQ
ANLNRAENQDNNNFTRVGFAGLKFSDYGSLDYGRNYGVLYDIGAWTDVLPEFGGDTYGADNFMFQRTNGVLTYRNSDFFG
LVDGLNFALQYQGKNDSATESNNGRDVLAQNGDGYGMSASYDLGYGISAAAAYFSSDRTNDQNGNNNAGILGRGDKAEAY
SGGLKYDANNVYLAAMYTQSYNATRFGSSNSSTYGYANKAQNMEIVAQYQFDFGLRPSVAYLQSKGKDIERGYGDQDLMK
YVDVGATYYFNKNMSTYVDYKINLMDENDFTKSAGINTDDVVAVGLVYQF
>Mature_370_residues
MKLRVLSLIVPALLVAGTAGAAEIYNKDGNKLDLFGKIDGLHYFSDDKGSDGDQSYMRFGLRGETQISDQLTGYGEWEYQ
ANLNRAENQDNNNFTRVGFAGLKFSDYGSLDYGRNYGVLYDIGAWTDVLPEFGGDTYGADNFMFQRTNGVLTYRNSDFFG
LVDGLNFALQYQGKNDSATESNNGRDVLAQNGDGYGMSASYDLGYGISAAAAYFSSDRTNDQNGNNNAGILGRGDKAEAY
SGGLKYDANNVYLAAMYTQSYNATRFGSSNSSTYGYANKAQNMEIVAQYQFDFGLRPSVAYLQSKGKDIERGYGDQDLMK
YVDVGATYYFNKNMSTYVDYKINLMDENDFTKSAGINTDDVVAVGLVYQF

Specific function: Forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=378, Percent_Identity=70.3703703703704, Blast_Score=519, Evalue=1e-148,
Organism=Escherichia coli, GI1787641, Length=384, Percent_Identity=64.5833333333333, Blast_Score=459, Evalue=1e-130,
Organism=Escherichia coli, GI1786436, Length=372, Percent_Identity=56.4516129032258, Blast_Score=405, Evalue=1e-114,
Organism=Escherichia coli, GI1787160, Length=378, Percent_Identity=57.9365079365079, Blast_Score=389, Evalue=1e-109,

Paralogues:

None

Copy number: 6020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 19068 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40795; Mature: 40795

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRVLSLIVPALLVAGTAGAAEIYNKDGNKLDLFGKIDGLHYFSDDKGSDGDQSYMRFG
CCEEHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEEEEECCEEEECCCCCCCCCHHHHEEC
LRGETQISDQLTGYGEWEYQANLNRAENQDNNNFTRVGFAGLKFSDYGSLDYGRNYGVLY
CCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEE
DIGAWTDVLPEFGGDTYGADNFMFQRTNGVLTYRNSDFFGLVDGLNFALQYQGKNDSATE
ECCCHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCEEEECCCEEEEEECCCCCCCCC
SNNGRDVLAQNGDGYGMSASYDLGYGISAAAAYFSSDRTNDQNGNNNAGILGRGDKAEAY
CCCCCEEEEECCCCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHH
SGGLKYDANNVYLAAMYTQSYNATRFGSSNSSTYGYANKAQNMEIVAQYQFDFGLRPSVA
CCCEEECCCCEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHH
YLQSKGKDIERGYGDQDLMKYVDVGATYYFNKNMSTYVDYKINLMDENDFTKSAGINTDD
HHHHCCCHHHCCCCHHHHHHHHHCCEEEEECCCCCEEEEEEEEEECCCCCCHHCCCCCCC
VVAVGLVYQF
EEEEEEEECC
>Mature Secondary Structure
MKLRVLSLIVPALLVAGTAGAAEIYNKDGNKLDLFGKIDGLHYFSDDKGSDGDQSYMRFG
CCEEHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEEEEECCEEEECCCCCCCCCHHHHEEC
LRGETQISDQLTGYGEWEYQANLNRAENQDNNNFTRVGFAGLKFSDYGSLDYGRNYGVLY
CCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEE
DIGAWTDVLPEFGGDTYGADNFMFQRTNGVLTYRNSDFFGLVDGLNFALQYQGKNDSATE
ECCCHHHHHHHHCCCCCCCCCEEEEECCCEEEEECCCCEEEECCCEEEEEECCCCCCCCC
SNNGRDVLAQNGDGYGMSASYDLGYGISAAAAYFSSDRTNDQNGNNNAGILGRGDKAEAY
CCCCCEEEEECCCCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHH
SGGLKYDANNVYLAAMYTQSYNATRFGSSNSSTYGYANKAQNMEIVAQYQFDFGLRPSVA
CCCEEECCCCEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHH
YLQSKGKDIERGYGDQDLMKYVDVGATYYFNKNMSTYVDYKINLMDENDFTKSAGINTDD
HHHHCCCHHHCCCCHHHHHHHHHCCEEEEECCCCCEEEEEEEEEECCCCCCHHCCCCCCC
VVAVGLVYQF
EEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8180703 [H]