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The map label for this gene is yjcR [C]

Identifier: 157371379

GI number: 157371379

Start: 3457884

End: 3458993

Strand: Reverse

Name: yjcR [C]

Synonym: Spro_3140

Alternate gene names: 157371379

Gene position: 3458993-3457884 (Counterclockwise)

Preceding gene: 157371380

Following gene: 157371378

Centisome position: 63.48

GC content: 60.72

Gene sequence:

>1110_bases
ATGCTCAGGCTTAATCCTGCCACTTTTGCTGTTTGCCTGTTGCCGCTTGCCCTTGTGGCCTGCGGTGACTCTTCCAGCAC
CGAAGATCCCCGTACTCAGCCTCCTCTGGTAAGGTCTGCGACCGTGGCGAGTGCTGTCGATTCTTCCCGCGCATTTACCG
GCGTTGTCGTAGCCCGAACTCAAAGTGACCTCGGTTTTAGAGTACAAGGCAAAATCCTTGAACGTCTGGTCGATACCGGC
CAGACCGTTAAACGCGGCCAGCCATTGATGCGTCTGGATCCGGTTGACCTGAGCCTGCAGGCACTGGCTCAGCAACAGGC
CGTCGCGGCGGCAAGGGCCCGTACAAGACAAGCTGCTGATGACGAGGCGCGTTACCGCAGTCTGGTCACTACGGGGGCTG
TGTCGGCATCGGCCTACGGTCAGATAAAGGCCGCAGCCGATACGGCCAAAGCGGAACTCAGTGCTGCACAGGCACAGGCG
AATGTGGCACAAAATGCGACTGGCTACGCCGTGCTGCTGGCCGACGCCGACGGAGTGGTCATGGATACGCTGGCTGAACC
CGGACAGGTTGTCAGTGCCGGGCAAGCGGTCATCCGGCTGGCCAGAGCAGGGCAGCGCGAGGCCATCGTGCAGTTGCCTG
AGACACTACGTCCGGCTACCGGAAGCGAGGCCGAGGCAACGTTGTACGGTACCGATAAACAGTCAGTCCCTGCGAAACTG
CGGCTCCTTTCCGATGCGGCCGATCCCGTAACGCGCACCTTCGAGGCGAGATATGTGCTGGAGGGGGCACTGGCAAGCGC
GCCTCTGGGATCCACCGTTACGCTTCATATTACTGACGATAAATTACCGGGCCAGATGATGCAGGTGCCTTTAGCGGCAA
TCTATGATCCGGGCAAAGGGCCGGGTGTCTGGGCGATTTCGGGTAAGCCGGCCAAAGTGTCATGGCGGCCTGTTCAACTG
CAGGGGTTAGGTGACGATGTTGCAAGGGTGACCGGTACCCTTAAGCCGGGTGAACAGGTGGTCGCACTGGGGGCGCATCT
GCTGCATGACGGTGAGGCGGTACGCCTGGCTGAACAGAGCGATACCCGCATCGCCGGGAGCCGGCCATGA

Upstream 100 bases:

>100_bases
GATACTGAGGAGTTTATCACCCTGAGTTGTGACTATTGACAATATTGGTCACTGGTCTGAGAATGCGGTTACTGTCCTGC
CAAATTAATTAAGGGAACCC

Downstream 100 bases:

>100_bases
GCGCGGGTCGATTCAATCTTTCAGCGCTTGCCGTTCGTGAGCGCTCGATCACACTGTTCCTTATTATTCTGATCACGGTC
GCGGGTATTCTCTCGTTTTT

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: Efflux Transporter RND Family MFP Subunit; Secretion Protein HlyD; RND Efflux Membrane Fusion Protein; HlyD Family Secretion Protein; Component Of Multidrug Efflux System; Transport/Efflux Transmembrane Protein; Membrane-Fusion Protein; RND Family Mulitdrug Efflux Protein; Efflux Protein; Protein Secretion Protein; Multidrug RND Transporter Membrane Fusion Protein; Cation/Multidrug Efflux System Mebrane-Fusion Component; Lipoprotein; Efflux Transporter; Membrane Efflux Protein; Multidrug Efflux Transporter Protein; HlyD Family Protein Secretion Protein; Membrane Fusion Protein; Multidrug Efflux Protein; Acriflavin Resistance Protein A; AbgT Transporter; Auxiliary Transport Protein MFP Family; Component Of Multidrug Efflux Protein; Multidrug Efflux; Efflux Transporter RND Family; Protein Secretion Protein HlyD Family; RND Family Efflux Transporter Subunit MFP; RND Membrane Fusion Protein; Secretion Protein; Efflux System Protein; RND Efflux Transporter; Periplasmic Multidrug Efflux Lipoprotein; Acriflavin Resistance Periplasmic Protein; Efflux Transmembrane Protein; HlyD-Family Secretion Protein; Component Of Multidrug Efflux System Protein; Efflux Transporter Rnd Family Mfp Subunit; RND Superfamily Transporter Membrane- Fusion Protein; RND Family Efflux Transporter; Rnd Efflux Membrane Fusion Protein; RND/Acr Family Transmembrane Transporter

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MLRLNPATFAVCLLPLALVACGDSSSTEDPRTQPPLVRSATVASAVDSSRAFTGVVVARTQSDLGFRVQGKILERLVDTG
QTVKRGQPLMRLDPVDLSLQALAQQQAVAAARARTRQAADDEARYRSLVTTGAVSASAYGQIKAAADTAKAELSAAQAQA
NVAQNATGYAVLLADADGVVMDTLAEPGQVVSAGQAVIRLARAGQREAIVQLPETLRPATGSEAEATLYGTDKQSVPAKL
RLLSDAADPVTRTFEARYVLEGALASAPLGSTVTLHITDDKLPGQMMQVPLAAIYDPGKGPGVWAISGKPAKVSWRPVQL
QGLGDDVARVTGTLKPGEQVVALGAHLLHDGEAVRLAEQSDTRIAGSRP

Sequences:

>Translated_369_residues
MLRLNPATFAVCLLPLALVACGDSSSTEDPRTQPPLVRSATVASAVDSSRAFTGVVVARTQSDLGFRVQGKILERLVDTG
QTVKRGQPLMRLDPVDLSLQALAQQQAVAAARARTRQAADDEARYRSLVTTGAVSASAYGQIKAAADTAKAELSAAQAQA
NVAQNATGYAVLLADADGVVMDTLAEPGQVVSAGQAVIRLARAGQREAIVQLPETLRPATGSEAEATLYGTDKQSVPAKL
RLLSDAADPVTRTFEARYVLEGALASAPLGSTVTLHITDDKLPGQMMQVPLAAIYDPGKGPGVWAISGKPAKVSWRPVQL
QGLGDDVARVTGTLKPGEQVVALGAHLLHDGEAVRLAEQSDTRIAGSRP
>Mature_369_residues
MLRLNPATFAVCLLPLALVACGDSSSTEDPRTQPPLVRSATVASAVDSSRAFTGVVVARTQSDLGFRVQGKILERLVDTG
QTVKRGQPLMRLDPVDLSLQALAQQQAVAAARARTRQAADDEARYRSLVTTGAVSASAYGQIKAAADTAKAELSAAQAQA
NVAQNATGYAVLLADADGVVMDTLAEPGQVVSAGQAVIRLARAGQREAIVQLPETLRPATGSEAEATLYGTDKQSVPAKL
RLLSDAADPVTRTFEARYVLEGALASAPLGSTVTLHITDDKLPGQMMQVPLAAIYDPGKGPGVWAISGKPAKVSWRPVQL
QGLGDDVARVTGTLKPGEQVVALGAHLLHDGEAVRLAEQSDTRIAGSRP

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38436; Mature: 38436

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLNPATFAVCLLPLALVACGDSSSTEDPRTQPPLVRSATVASAVDSSRAFTGVVVART
CEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEE
QSDLGFRVQGKILERLVDTGQTVKRGQPLMRLDPVDLSLQALAQQQAVAAARARTRQAAD
CCCCCEEEHHHHHHHHHHCCCHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
DEARYRSLVTTGAVSASAYGQIKAAADTAKAELSAAQAQANVAQNATGYAVLLADADGVV
HHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEE
MDTLAEPGQVVSAGQAVIRLARAGQREAIVQLPETLRPATGSEAEATLYGTDKQSVPAKL
EHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHCCCCCCCCCEEEEECCCCCCCHHH
RLLSDAADPVTRTFEARYVLEGALASAPLGSTVTLHITDDKLPGQMMQVPLAAIYDPGKG
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHCCHHEEECCCCC
PGVWAISGKPAKVSWRPVQLQGLGDDVARVTGTLKPGEQVVALGAHLLHDGEAVRLAEQS
CEEEEECCCCCEEEEEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCC
DTRIAGSRP
CCCCCCCCC
>Mature Secondary Structure
MLRLNPATFAVCLLPLALVACGDSSSTEDPRTQPPLVRSATVASAVDSSRAFTGVVVART
CEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEE
QSDLGFRVQGKILERLVDTGQTVKRGQPLMRLDPVDLSLQALAQQQAVAAARARTRQAAD
CCCCCEEEHHHHHHHHHHCCCHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
DEARYRSLVTTGAVSASAYGQIKAAADTAKAELSAAQAQANVAQNATGYAVLLADADGVV
HHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEE
MDTLAEPGQVVSAGQAVIRLARAGQREAIVQLPETLRPATGSEAEATLYGTDKQSVPAKL
EHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHCCCCCCCCCEEEEECCCCCCCHHH
RLLSDAADPVTRTFEARYVLEGALASAPLGSTVTLHITDDKLPGQMMQVPLAAIYDPGKG
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHCCHHEEECCCCC
PGVWAISGKPAKVSWRPVQLQGLGDDVARVTGTLKPGEQVVALGAHLLHDGEAVRLAEQS
CEEEEECCCCCEEEEEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCC
DTRIAGSRP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA