Click here to switch to the map view.

The map label for this gene is yhjC [H]

Identifier: 157371302

GI number: 157371302

Start: 3372329

End: 3373231

Strand: Reverse

Name: yhjC [H]

Synonym: Spro_3062

Alternate gene names: 157371302

Gene position: 3373231-3372329 (Counterclockwise)

Preceding gene: 157371303

Following gene: 157371301

Centisome position: 61.91

GC content: 56.37

Gene sequence:

>903_bases
GTGGATAAAATAGGGAGATTGCGGGTCTTTATCCAGGTGGCCGAAGTGGGCAGTTTTATCCGGGCTTCGCAGATCCTGCT
GATGCCAAAAACCACGGTTTCGGCCGCGATACAGCAATTGGAACATGAAATGGGCACTCGCCTGTTTCATCGCACCACTC
GCCGGGTACAACTGACCAGCGACGGTGAACTGTTGCTCGAAAAGGCACGCAGCCTGCTGTTTGACGTGCAGGCATTGGAA
AGTCTGTTTCACCGGCAGAACGGCCCGATCGGGGGACGTTTGACGGTCGATGTCCCCAGCCGTATCGCCCGGAGAATGAT
CGTGCCGGCGCTGCCGGACTTTTTTCTGCAGTATCCCGAAATCCAACTGTTTCTCAGCGCCAGCGACCGTTCAGTCGATC
TGATCCAGGAAGGGATCGATTGCGTGGTGCGCGTCGGCAATCTCAGCGACAGCAGTCTGGTCAGCCAGCCGCTGGGCCGT
CTGAGTATGATCAACTGTGCCAGTCCGGATTATTTGCAGCGCTACGGGACCCCGGAGCATCCTGACCAATTGGAAGATCA
CTGGGTGGTGGGCTATGCGCAGCCGACCCTGGCAGGGGCGGATAGCTGGCAGTGGCAGCAGGATGGACAGCATTTTGAGA
AAACGTTGCCTAATCGGGTGACGGTGAACAATGTGGAAAACTACATCGGCTGTTGCCTGGTGGGGTTGGGAATGATGCAG
ATACCGCGTTTTGATGTTCAACACTACCTGGATAACGGTAGCCTGTGCGAGATCTTGCCGCAGGCCCGGCCACCGGCAAT
GAGCATGGCTTTGCTTTATCCCCATCGTCGTCAGCGTTCGGCGCGTTTAACCGCCTTTTCCGAGTGGTTCAGCCAGTTAA
TCAAGCCGTTTTGCGAAACCTGA

Upstream 100 bases:

>100_bases
TCACCGGGCAGACGCTGTTTGCCAACGGTGGCTATACTACCCGTTAATATCAATTTTGCTGCGGCCGATGCCGCAGCCTG
TTTAACAGGATGCACTGCCG

Downstream 100 bases:

>100_bases
GGCCTGGTGGCCAATGGGATTTTTATCTAAGTGAGATGCTATTTATTATTGGCTTTCAGGCAATTAAATTTCTGTAAAAA
CAAGACACAATTAAAACCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDKIGRLRVFIQVAEVGSFIRASQILLMPKTTVSAAIQQLEHEMGTRLFHRTTRRVQLTSDGELLLEKARSLLFDVQALE
SLFHRQNGPIGGRLTVDVPSRIARRMIVPALPDFFLQYPEIQLFLSASDRSVDLIQEGIDCVVRVGNLSDSSLVSQPLGR
LSMINCASPDYLQRYGTPEHPDQLEDHWVVGYAQPTLAGADSWQWQQDGQHFEKTLPNRVTVNNVENYIGCCLVGLGMMQ
IPRFDVQHYLDNGSLCEILPQARPPAMSMALLYPHRRQRSARLTAFSEWFSQLIKPFCET

Sequences:

>Translated_300_residues
MDKIGRLRVFIQVAEVGSFIRASQILLMPKTTVSAAIQQLEHEMGTRLFHRTTRRVQLTSDGELLLEKARSLLFDVQALE
SLFHRQNGPIGGRLTVDVPSRIARRMIVPALPDFFLQYPEIQLFLSASDRSVDLIQEGIDCVVRVGNLSDSSLVSQPLGR
LSMINCASPDYLQRYGTPEHPDQLEDHWVVGYAQPTLAGADSWQWQQDGQHFEKTLPNRVTVNNVENYIGCCLVGLGMMQ
IPRFDVQHYLDNGSLCEILPQARPPAMSMALLYPHRRQRSARLTAFSEWFSQLIKPFCET
>Mature_300_residues
MDKIGRLRVFIQVAEVGSFIRASQILLMPKTTVSAAIQQLEHEMGTRLFHRTTRRVQLTSDGELLLEKARSLLFDVQALE
SLFHRQNGPIGGRLTVDVPSRIARRMIVPALPDFFLQYPEIQLFLSASDRSVDLIQEGIDCVVRVGNLSDSSLVSQPLGR
LSMINCASPDYLQRYGTPEHPDQLEDHWVVGYAQPTLAGADSWQWQQDGQHFEKTLPNRVTVNNVENYIGCCLVGLGMMQ
IPRFDVQHYLDNGSLCEILPQARPPAMSMALLYPHRRQRSARLTAFSEWFSQLIKPFCET

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=307, Percent_Identity=40.3908794788274, Blast_Score=251, Evalue=4e-68,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=32.5342465753425, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=29.5918367346939, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1789639, Length=306, Percent_Identity=28.4313725490196, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=28.0141843971631, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=30.952380952381, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=26.3157894736842, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1788706, Length=221, Percent_Identity=28.5067873303167, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082132, Length=271, Percent_Identity=31.3653136531365, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786713, Length=276, Percent_Identity=28.2608695652174, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786448, Length=289, Percent_Identity=24.2214532871972, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787601, Length=121, Percent_Identity=28.9256198347107, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788481, Length=168, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789173, Length=184, Percent_Identity=28.2608695652174, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790399, Length=159, Percent_Identity=25.7861635220126, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=34.4827586206897, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788297, Length=170, Percent_Identity=24.7058823529412, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33994; Mature: 33994

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIGRLRVFIQVAEVGSFIRASQILLMPKTTVSAAIQQLEHEMGTRLFHRTTRRVQLTS
CCCCHHHHHHEEHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHCEEEECC
DGELLLEKARSLLFDVQALESLFHRQNGPIGGRLTVDVPSRIARRMIVPALPDFFLQYPE
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCHHHHCCCC
IQLFLSASDRSVDLIQEGIDCVVRVGNLSDSSLVSQPLGRLSMINCASPDYLQRYGTPEH
EEEEEECCCCCHHHHHHHHHHEEEECCCCCHHHHHHHHHHEEEECCCCHHHHHHCCCCCC
PDQLEDHWVVGYAQPTLAGADSWQWQQDGQHFEKTLPNRVTVNNVENYIGCCLVGLGMMQ
CCCCCCCEEEEECCCCCCCCCCCCCHHCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHH
IPRFDVQHYLDNGSLCEILPQARPPAMSMALLYPHRRQRSARLTAFSEWFSQLIKPFCET
CCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKIGRLRVFIQVAEVGSFIRASQILLMPKTTVSAAIQQLEHEMGTRLFHRTTRRVQLTS
CCCCHHHHHHEEHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHCEEEECC
DGELLLEKARSLLFDVQALESLFHRQNGPIGGRLTVDVPSRIARRMIVPALPDFFLQYPE
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCHHHHCCCC
IQLFLSASDRSVDLIQEGIDCVVRVGNLSDSSLVSQPLGRLSMINCASPDYLQRYGTPEH
EEEEEECCCCCHHHHHHHHHHEEEECCCCCHHHHHHHHHHEEEECCCCHHHHHHCCCCCC
PDQLEDHWVVGYAQPTLAGADSWQWQQDGQHFEKTLPNRVTVNNVENYIGCCLVGLGMMQ
CCCCCCCEEEEECCCCCCCCCCCCCHHCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHH
IPRFDVQHYLDNGSLCEILPQARPPAMSMALLYPHRRQRSARLTAFSEWFSQLIKPFCET
CCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]