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The map label for this gene is ydgD [H]

Identifier: 157370834

GI number: 157370834

Start: 2852393

End: 2853247

Strand: Direct

Name: ydgD [H]

Synonym: Spro_2594

Alternate gene names: 157370834

Gene position: 2852393-2853247 (Clockwise)

Preceding gene: 157370833

Following gene: 157370836

Centisome position: 52.35

GC content: 57.43

Gene sequence:

>855_bases
ATGGATGATCCGTATTTTCCAGGCAAGAAACCTATGCGCATAACCGTTTTGCTGTTGCTGTGCTCATTCCCGCTCGCACT
CTCCCTCTCAGCACGGGCCGACAGCCCATCCGATTCGTCGACCGCTGAGCAAACCCGCCTGTTTTTTGGCAAGGATGAAC
GAATAAAAGTAACGGAAACCGACGGTTGGCCGTGGCAGGCCATTGGGCAAGTGGAAACCGCCAGCGGTAACCTGTGCACC
GCCACGCTGATCTCTCCGCATCTGGCGCTCACCGCAGGCCACTGCGTGCTGGCACCACCGGGTCAACTGGATAAAGCCAT
TGCGCTGCGTTTTGTTGCCGGTAATAAGACCTGGAAATACCAGACCGACAATATTGAGACGCTGGTGGATCGCAAACTGG
GCAAAAAACTCAAGCCTGACGGCGATGGCTGGATTGTACCGCCAGCGGCAGCGGCCTATGACTTTGCCCTGATCCGTCTG
AAGGATAAAAAAACCTTGCCGATTAAGCCGCTGCCGTTGTGGCAAGGCGACAGCAAGGCACTGACCCAGGCAATGAAACA
AGCCAAACGGCTGATTACCCAGGCGGGATACCCGGAAGATCATCTGGACGATCTCTACAGCCACCAGAACTGTAAAGTGA
CCGGCTGGGCGCAACAAGGTGTACTTTCGCACCAGTGCGATACCCTGCCCGGCGACAGCGGTTCGCCGTTACTGCTGAAA
ACTGCCGACGGTTGGCGGCTTATTGCCATTCAAAGCTCCGCACCGGCAGCCAAAGACCGTTACCGCGCCGATAACCGCGC
GCTGGCAGTGACCGGTATCCGCGATGCGCTGGACGCGCTGGCGGCGGGGAAATAA

Upstream 100 bases:

>100_bases
TGTAGCCACACCGCCCTCTGGATAATAAATTATTGAAAAATCAATCACTGCCCATCCACACGGCGACTAATTCAGTCTAT
AGTTACCATTCAGTGTGTTT

Downstream 100 bases:

>100_bases
AACCCGGGGGCAACTTGTTGCCCCCGATTAATTACACTGAAAGCTGCTCGATAGTCTGCAGGATACGCTTGTCCGAGATC
GGATAAGGCGTGCCCAGTTG

Product: peptidase S1 and S6 chymotrypsin/Hap

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MDDPYFPGKKPMRITVLLLLCSFPLALSLSARADSPSDSSTAEQTRLFFGKDERIKVTETDGWPWQAIGQVETASGNLCT
ATLISPHLALTAGHCVLAPPGQLDKAIALRFVAGNKTWKYQTDNIETLVDRKLGKKLKPDGDGWIVPPAAAAYDFALIRL
KDKKTLPIKPLPLWQGDSKALTQAMKQAKRLITQAGYPEDHLDDLYSHQNCKVTGWAQQGVLSHQCDTLPGDSGSPLLLK
TADGWRLIAIQSSAPAAKDRYRADNRALAVTGIRDALDALAAGK

Sequences:

>Translated_284_residues
MDDPYFPGKKPMRITVLLLLCSFPLALSLSARADSPSDSSTAEQTRLFFGKDERIKVTETDGWPWQAIGQVETASGNLCT
ATLISPHLALTAGHCVLAPPGQLDKAIALRFVAGNKTWKYQTDNIETLVDRKLGKKLKPDGDGWIVPPAAAAYDFALIRL
KDKKTLPIKPLPLWQGDSKALTQAMKQAKRLITQAGYPEDHLDDLYSHQNCKVTGWAQQGVLSHQCDTLPGDSGSPLLLK
TADGWRLIAIQSSAPAAKDRYRADNRALAVTGIRDALDALAAGK
>Mature_284_residues
MDDPYFPGKKPMRITVLLLLCSFPLALSLSARADSPSDSSTAEQTRLFFGKDERIKVTETDGWPWQAIGQVETASGNLCT
ATLISPHLALTAGHCVLAPPGQLDKAIALRFVAGNKTWKYQTDNIETLVDRKLGKKLKPDGDGWIVPPAAAAYDFALIRL
KDKKTLPIKPLPLWQGDSKALTQAMKQAKRLITQAGYPEDHLDDLYSHQNCKVTGWAQQGVLSHQCDTLPGDSGSPLLLK
TADGWRLIAIQSSAPAAKDRYRADNRALAVTGIRDALDALAAGK

Specific function: Unknown

COG id: COG3591

COG function: function code E; V8-like Glu-specific endopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

Organism=Escherichia coli, GI1787882, Length=273, Percent_Identity=62.6373626373626, Blast_Score=327, Evalue=5e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR018114
- InterPro:   IPR001254
- InterPro:   IPR008256 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 30855; Mature: 30855

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS00134 TRYPSIN_HIS ; PS00135 TRYPSIN_SER ; PS50240 TRYPSIN_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDPYFPGKKPMRITVLLLLCSFPLALSLSARADSPSDSSTAEQTRLFFGKDERIKVTET
CCCCCCCCCCCHHHHHHHHHHHCHHEEEEECCCCCCCCCCCHHHHEEEECCCCEEEEEEC
DGWPWQAIGQVETASGNLCTATLISPHLALTAGHCVLAPPGQLDKAIALRFVAGNKTWKY
CCCCCCCCCEEEECCCCEEEEEECCCCEEEECCCEEECCCCCCCCEEEEEEEECCCEEEE
QTDNIETLVDRKLGKKLKPDGDGWIVPPAAAAYDFALIRLKDKKTLPIKPLPLWQGDSKA
ECCCHHHHHHHHHCCCCCCCCCCEEECCCHHHHEEEEEEEECCCCCCCCCCCCCCCCHHH
LTQAMKQAKRLITQAGYPEDHLDDLYSHQNCKVTGWAQQGVLSHQCDTLPGDSGSPLLLK
HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEECHHHCCCHHHCCCCCCCCCCCEEEEE
TADGWRLIAIQSSAPAAKDRYRADNRALAVTGIRDALDALAAGK
ECCCEEEEEEECCCCCHHHHHCCCCCEEEEECHHHHHHHHHCCC
>Mature Secondary Structure
MDDPYFPGKKPMRITVLLLLCSFPLALSLSARADSPSDSSTAEQTRLFFGKDERIKVTET
CCCCCCCCCCCHHHHHHHHHHHCHHEEEEECCCCCCCCCCCHHHHEEEECCCCEEEEEEC
DGWPWQAIGQVETASGNLCTATLISPHLALTAGHCVLAPPGQLDKAIALRFVAGNKTWKY
CCCCCCCCCEEEECCCCEEEEEECCCCEEEECCCEEECCCCCCCCEEEEEEEECCCEEEE
QTDNIETLVDRKLGKKLKPDGDGWIVPPAAAAYDFALIRLKDKKTLPIKPLPLWQGDSKA
ECCCHHHHHHHHHCCCCCCCCCCEEECCCHHHHEEEEEEEECCCCCCCCCCCCCCCCHHH
LTQAMKQAKRLITQAGYPEDHLDDLYSHQNCKVTGWAQQGVLSHQCDTLPGDSGSPLLLK
HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEECHHHCCCHHHCCCCCCCCCCCEEEEE
TADGWRLIAIQSSAPAAKDRYRADNRALAVTGIRDALDALAAGK
ECCCEEEEEEECCCCCHHHHHCCCCCEEEEECHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]