| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is yteT [H]
Identifier: 157370815
GI number: 157370815
Start: 2831596
End: 2832879
Strand: Direct
Name: yteT [H]
Synonym: Spro_2575
Alternate gene names: 157370815
Gene position: 2831596-2832879 (Clockwise)
Preceding gene: 157370814
Following gene: 157370816
Centisome position: 51.97
GC content: 59.74
Gene sequence:
>1284_bases ATGTCGTCAGCTCAACAAAATGGTTTTGCCGGCCGCCCGGTTCGGGTACTGGTGATTGGTGCCGGGGCGCGTGGAGAAAT TTACTCGCGCTACGCGTTGGCTCACCCGGATTTAATGCAGGTGGTCGCAGTGGCCGAGCCACGTGACGTCTACCGTCAGC AATTTGTCGAACAGCACGCTATCGCGGCGGACAAGGTGTTCACCGACTGGCGGCAGGCCGCCGACGCCGGCAAATTGGCC GATGCGGTGCTGATCTGCACTCAGGATACCCTGCACCTCGAACCGGCACTGGCCTTCGCCAAACAGGGTTATGCCATGCT GCTGGAGAAACCGCTGTCGCCGGACGCCAGCGAATGCCGCACTATTGTCGAGGAAGTGGTGCGCCAGAAGCTGATTTTCT CCGTCGGCCACGTGCTGCGCTATACGCGTTACACCCAAAAACTGAAGCAACTGCTGCGCGATAACGTGATTGGCGACATC GTCAGCCTGCAACATCTGGAGCCGGTGGGCTACTGGCATCAGGCGCACTCCTTCGTGCGCGGCAACTGGCGCAACGACAA CGAAGCCGCCTTTATGCTGCTGCAGAAGTCCTGCCACGACATCGACTGGATCCGCTACATCATGGAATTGCCCTGCGAGC AGATCAGTTCATTCGGTGGCCTGCGCCATTTTCGCCAGGAAAACCAACCGGCCGGGGCAGCAGATAACTGTCTGGACTGC GCGGTGGAAGCCAGTTGCCCCTACTCCGCCAAACGCATCTACCTGGGTGACGACCACAAGGCGACGCCGGGTTTCCTGCG GGTGTTGACCCCAGAAGTCAGCCAGCCGCATTTGCAGGCGGCGCTGCGCGACGGTCAATATGGCCGCTGCGTCTATCGCT GCGACAATAACGTGGTCGATCATCAGGTGGTCAACATGCAATTTGCCGGTGGCCGCACCGCCTCCTTCACCATGACCGCC TTTACCCGGCTGGAAGATCGCCAGACCCGTATTTTCGGCAGCCATGGCTGTCTTGAGGGAGACGGACGCTACATCCGCAT TACCTCATTCGTCGACGACAGTGAAAAGGTCTACGACGTCGATGAGGCCGAAGATCTGCACGCCATGTCCGGTCACGGCG GTGGCGATTACTACCTGATGCAGCATTTTATCGACGCCATTCGCACCAACGATCCTTCACAGGTGCTGTCCGGCCCGGCA GAAACGCTGGAAAGCCACCTGATGGTGTTTGCGGCGGAACGCGCACGCCGCGAATCTGCAGTGATCACCCTGAGTGGAGC CTGA
Upstream 100 bases:
>100_bases CTGGGGGAACAGATCCACCTGGCTTTCGACCTGTCCCGCGCGCACCTGTTTGACGAAATCAGCGGCCAAAACCTCAAATA ATTAGATCGGAGAATGTGCA
Downstream 100 bases:
>100_bases AAACGTGGAAATATCACAGATGCGCTACGGTTTCGATATCGGCGGCACCAAGATCGAGATGGCGGCCTACGACCGGCAGC TCAGACAGGTACTGTGCCAG
Product: oxidoreductase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MSSAQQNGFAGRPVRVLVIGAGARGEIYSRYALAHPDLMQVVAVAEPRDVYRQQFVEQHAIAADKVFTDWRQAADAGKLA DAVLICTQDTLHLEPALAFAKQGYAMLLEKPLSPDASECRTIVEEVVRQKLIFSVGHVLRYTRYTQKLKQLLRDNVIGDI VSLQHLEPVGYWHQAHSFVRGNWRNDNEAAFMLLQKSCHDIDWIRYIMELPCEQISSFGGLRHFRQENQPAGAADNCLDC AVEASCPYSAKRIYLGDDHKATPGFLRVLTPEVSQPHLQAALRDGQYGRCVYRCDNNVVDHQVVNMQFAGGRTASFTMTA FTRLEDRQTRIFGSHGCLEGDGRYIRITSFVDDSEKVYDVDEAEDLHAMSGHGGGDYYLMQHFIDAIRTNDPSQVLSGPA ETLESHLMVFAAERARRESAVITLSGA
Sequences:
>Translated_427_residues MSSAQQNGFAGRPVRVLVIGAGARGEIYSRYALAHPDLMQVVAVAEPRDVYRQQFVEQHAIAADKVFTDWRQAADAGKLA DAVLICTQDTLHLEPALAFAKQGYAMLLEKPLSPDASECRTIVEEVVRQKLIFSVGHVLRYTRYTQKLKQLLRDNVIGDI VSLQHLEPVGYWHQAHSFVRGNWRNDNEAAFMLLQKSCHDIDWIRYIMELPCEQISSFGGLRHFRQENQPAGAADNCLDC AVEASCPYSAKRIYLGDDHKATPGFLRVLTPEVSQPHLQAALRDGQYGRCVYRCDNNVVDHQVVNMQFAGGRTASFTMTA FTRLEDRQTRIFGSHGCLEGDGRYIRITSFVDDSEKVYDVDEAEDLHAMSGHGGGDYYLMQHFIDAIRTNDPSQVLSGPA ETLESHLMVFAAERARRESAVITLSGA >Mature_426_residues SSAQQNGFAGRPVRVLVIGAGARGEIYSRYALAHPDLMQVVAVAEPRDVYRQQFVEQHAIAADKVFTDWRQAADAGKLAD AVLICTQDTLHLEPALAFAKQGYAMLLEKPLSPDASECRTIVEEVVRQKLIFSVGHVLRYTRYTQKLKQLLRDNVIGDIV SLQHLEPVGYWHQAHSFVRGNWRNDNEAAFMLLQKSCHDIDWIRYIMELPCEQISSFGGLRHFRQENQPAGAADNCLDCA VEASCPYSAKRIYLGDDHKATPGFLRVLTPEVSQPHLQAALRDGQYGRCVYRCDNNVVDHQVVNMQFAGGRTASFTMTAF TRLEDRQTRIFGSHGCLEGDGRYIRITSFVDDSEKVYDVDEAEDLHAMSGHGGGDYYLMQHFIDAIRTNDPSQVLSGPAE TLESHLMVFAAERARRESAVITLSGA
Specific function: May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls [H]
COG id: COG0673
COG function: function code R; Predicted dehydrogenases and related proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gfo/idh/mocA family [H]
Homologues:
Organism=Escherichia coli, GI87082405, Length=204, Percent_Identity=25, Blast_Score=68, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR000683 - InterPro: IPR004104 [H]
Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 47767; Mature: 47636
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSAQQNGFAGRPVRVLVIGAGARGEIYSRYALAHPDLMQVVAVAEPRDVYRQQFVEQHA CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHH IAADKVFTDWRQAADAGKLADAVLICTQDTLHLEPALAFAKQGYAMLLEKPLSPDASECR HHHHHHHHHHHHHHCCCHHHCEEEEEECCCCCCCHHHHHHHCCHHHHHCCCCCCCHHHHH TIVEEVVRQKLIFSVGHVLRYTRYTQKLKQLLRDNVIGDIVSLQHLEPVGYWHQAHSFVR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC GNWRNDNEAAFMLLQKSCHDIDWIRYIMELPCEQISSFGGLRHFRQENQPAGAADNCLDC CCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH AVEASCPYSAKRIYLGDDHKATPGFLRVLTPEVSQPHLQAALRDGQYGRCVYRCDNNVVD HEECCCCCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCC HQVVNMQFAGGRTASFTMTAFTRLEDRQTRIFGSHGCLEGDGRYIRITSFVDDSEKVYDV CEEEEEEECCCCCEEEEHHHHHHHHHHHHHEECCCCCCCCCCCEEEEEEEECCCCCEECC DEAEDLHAMSGHGGGDYYLMQHFIDAIRTNDPSQVLSGPAETLESHLMVFAAERARRESA CCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCE VITLSGA EEEEECC >Mature Secondary Structure SSAQQNGFAGRPVRVLVIGAGARGEIYSRYALAHPDLMQVVAVAEPRDVYRQQFVEQHA CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHH IAADKVFTDWRQAADAGKLADAVLICTQDTLHLEPALAFAKQGYAMLLEKPLSPDASECR HHHHHHHHHHHHHHCCCHHHCEEEEEECCCCCCCHHHHHHHCCHHHHHCCCCCCCHHHHH TIVEEVVRQKLIFSVGHVLRYTRYTQKLKQLLRDNVIGDIVSLQHLEPVGYWHQAHSFVR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC GNWRNDNEAAFMLLQKSCHDIDWIRYIMELPCEQISSFGGLRHFRQENQPAGAADNCLDC CCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH AVEASCPYSAKRIYLGDDHKATPGFLRVLTPEVSQPHLQAALRDGQYGRCVYRCDNNVVD HEECCCCCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCC HQVVNMQFAGGRTASFTMTAFTRLEDRQTRIFGSHGCLEGDGRYIRITSFVDDSEKVYDV CEEEEEEECCCCCEEEEHHHHHHHHHHHHHEECCCCCCCCCCCEEEEEEEECCCCCEECC DEAEDLHAMSGHGGGDYYLMQHFIDAIRTNDPSQVLSGPAETLESHLMVFAAERARRESA CCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCE VITLSGA EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]