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The map label for this gene is ycfQ [H]

Identifier: 157370785

GI number: 157370785

Start: 2801044

End: 2801628

Strand: Direct

Name: ycfQ [H]

Synonym: Spro_2545

Alternate gene names: 157370785

Gene position: 2801044-2801628 (Clockwise)

Preceding gene: 157370781

Following gene: 157370789

Centisome position: 51.41

GC content: 58.12

Gene sequence:

>585_bases
ATGGCAGGCAGACCGCGCGAATTCGACCGTGAACAGGCGTTATTGAAGGCCCGGGATCTCTTCTGGCGTCAGGGGTATGA
AGGCACCTCCATGTCGGATTTGGTCGCCGAGTTGGGCATTGCCTCTGCGCGTATTTATAAAGCGTTCGGTTCGAAAGAAT
TGCTGTTCCGCGAAGCCATTGCCAGCTACGAAAACCATGAAGGTGGCTTTGCCGATCGCGCTTTCAGCGAAGAAAGCAGC
GTGCGTGTGGCGATAAAACGCCTGCTGGACGACGCGGTAGCGCTCTACAGCCGCACTGACCTGCCGCAAGGTTGCATGGT
AGTGTCTTCCGCCGCCAGCGTCAGTGACGAAAACAGCGGTATCAAAGACTGGCTGGCGGAGCATCGTTTGCAACGCACCC
AGGGCATGATTGACCGGCTGCAAACCGCCGTTGCGACGGGAGAACTACCACCAGAAACCGATGCTGACGCTCTCGGCGAC
TATTTTGCCGCCTTCCTGCACGGTTTGTCGGTGCAGGCACGCGATGGCGTCAGCCGGGCAAGATTAGAGGCAGCGGTCAA
GATTGCGCTTTCGGCGCTGGATTGA

Upstream 100 bases:

>100_bases
AAATGAATCCTTCAGCAAGCGAATTTTAAAAAATCGTTGGTATTACAGTGGATTTAAGCGATCCTGTTGCGCAGAACAAC
AGATAAACAGGAACAGAGGA

Downstream 100 bases:

>100_bases
TCACTCCGGTAAATCAACTATCACCAGGGTGCCGTGGCTGCCCGCCAGCACCCGATGCGGCACGCCGGCAGTGGCCTGAT
ACAGTTGCCCGGCGTTGATC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MAGRPREFDREQALLKARDLFWRQGYEGTSMSDLVAELGIASARIYKAFGSKELLFREAIASYENHEGGFADRAFSEESS
VRVAIKRLLDDAVALYSRTDLPQGCMVVSSAASVSDENSGIKDWLAEHRLQRTQGMIDRLQTAVATGELPPETDADALGD
YFAAFLHGLSVQARDGVSRARLEAAVKIALSALD

Sequences:

>Translated_194_residues
MAGRPREFDREQALLKARDLFWRQGYEGTSMSDLVAELGIASARIYKAFGSKELLFREAIASYENHEGGFADRAFSEESS
VRVAIKRLLDDAVALYSRTDLPQGCMVVSSAASVSDENSGIKDWLAEHRLQRTQGMIDRLQTAVATGELPPETDADALGD
YFAAFLHGLSVQARDGVSRARLEAAVKIALSALD
>Mature_193_residues
AGRPREFDREQALLKARDLFWRQGYEGTSMSDLVAELGIASARIYKAFGSKELLFREAIASYENHEGGFADRAFSEESSV
RVAIKRLLDDAVALYSRTDLPQGCMVVSSAASVSDENSGIKDWLAEHRLQRTQGMIDRLQTAVATGELPPETDADALGDY
FAAFLHGLSVQARDGVSRARLEAAVKIALSALD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=196, Percent_Identity=32.6530612244898, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI87082397, Length=205, Percent_Identity=26.3414634146341, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21230; Mature: 21099

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRPREFDREQALLKARDLFWRQGYEGTSMSDLVAELGIASARIYKAFGSKELLFREAI
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ASYENHEGGFADRAFSEESSVRVAIKRLLDDAVALYSRTDLPQGCMVVSSAASVSDENSG
HHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
IKDWLAEHRLQRTQGMIDRLQTAVATGELPPETDADALGDYFAAFLHGLSVQARDGVSRA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCHHHH
RLEAAVKIALSALD
HHHHHHHHHHHHCC
>Mature Secondary Structure 
AGRPREFDREQALLKARDLFWRQGYEGTSMSDLVAELGIASARIYKAFGSKELLFREAI
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ASYENHEGGFADRAFSEESSVRVAIKRLLDDAVALYSRTDLPQGCMVVSSAASVSDENSG
HHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
IKDWLAEHRLQRTQGMIDRLQTAVATGELPPETDADALGDYFAAFLHGLSVQARDGVSRA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCHHHH
RLEAAVKIALSALD
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]