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The map label for this gene is ydcI [H]

Identifier: 157370743

GI number: 157370743

Start: 2748819

End: 2749805

Strand: Direct

Name: ydcI [H]

Synonym: Spro_2503

Alternate gene names: 157370743

Gene position: 2748819-2749805 (Clockwise)

Preceding gene: 157370742

Following gene: 157370748

Centisome position: 50.45

GC content: 59.68

Gene sequence:

>987_bases
ATGCGGCCGCCGTCACTTGTTAGCGATGGGAAAAACTCCCTACACTGGGGGATGAAAAAAGCAAATTTATTCATCCAACG
CATGCGTTTACGCCACATCAACGGCTTTGTTGCCGTGGCGCAGGAACGCTCGCTGAGCCGCGCAGCCGATAAGCTGAACC
TGAGCCAACCCGCACTTTCAAAGACGCTGAGCGAACTGGAAGCGCTAACTGGCAACCGCCTGTTGGTGCGTAACCGCCAG
GGAACCCTGCTGACCGAACAGGGGGAGCAGTTCCTCGGCTATGCCACGCGGGTGCTGGAGGCGCTGACCGCCGCCGGGCA
CGCGCTTGACCGGCTCGACGATGCACCTGCGCGGGTATTACGTATCGGTGCGCTGCCGACCACCGCACTGGGCATGCTGC
CGCAGTCCATCGGCCAGTATCAGCAGGCCCACCCACATTCACGCATTCAGGTGATTACCGGCAAAAATGCCGAGTTGCTG
GCACAGCTCAAAGCGGGTGAGATTGACGTGGCGATTGGCCGCATGGCCGATCCGGAAATGATGAGCGGGCTGGCTTTCGA
GCTGTTGCTGTTGGAGTCACTGCTGATGGTGACGCGGCCGGGGCACCCGCTGTTAAGCGAGACCATCACTCTGGAGCGCG
CGCTGCATTATCCTGCCATTATCTCGCCGAAGGGCACGGTGCCGCGCCACAACACCGAGAGTCTGCTTTCAACCCAGGGC
TTCAGTCTGCCCGGCCAATACATAGAAACGCTGTCCGCTTCGCTGGCCCGTCAGATGACGCTGCAATTTGACTATCTGTG
GTTTGTGCCTTCCAGCGCGGTGAAAGCCGATATTGCCGCCGGTCAGTTGATCCCGCTGCCACTGCCGACTCAGGGGATGG
AAGAAGCGGTAGGCATTCTGACCCGTAACGACGGTGAATTAAGCGAGGCCGTACTGGCATTTATCTCCACCGTGCGTGGT
ATCGCTGGCGCAGTGCGTTCTGCTTAA

Upstream 100 bases:

>100_bases
TCGTTTTGATATCGTGATCCAGGGCGAAGGCGAAACGGTGTTCTTCGACCTGTAAACGCCGCCAGTCTGCGGCCGCAAAA
AATCGTACGTCAGTGCAAAA

Downstream 100 bases:

>100_bases
TCGGCTTCCCGGTCCTGTTCGGCAAACACTTCTGCCGCCAGATGAAACGCCGAGTTGGCCGCCGGCAGGCCGCAGTACAG
CGCACTTTGCATCAGCACTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MRPPSLVSDGKNSLHWGMKKANLFIQRMRLRHINGFVAVAQERSLSRAADKLNLSQPALSKTLSELEALTGNRLLVRNRQ
GTLLTEQGEQFLGYATRVLEALTAAGHALDRLDDAPARVLRIGALPTTALGMLPQSIGQYQQAHPHSRIQVITGKNAELL
AQLKAGEIDVAIGRMADPEMMSGLAFELLLLESLLMVTRPGHPLLSETITLERALHYPAIISPKGTVPRHNTESLLSTQG
FSLPGQYIETLSASLARQMTLQFDYLWFVPSSAVKADIAAGQLIPLPLPTQGMEEAVGILTRNDGELSEAVLAFISTVRG
IAGAVRSA

Sequences:

>Translated_328_residues
MRPPSLVSDGKNSLHWGMKKANLFIQRMRLRHINGFVAVAQERSLSRAADKLNLSQPALSKTLSELEALTGNRLLVRNRQ
GTLLTEQGEQFLGYATRVLEALTAAGHALDRLDDAPARVLRIGALPTTALGMLPQSIGQYQQAHPHSRIQVITGKNAELL
AQLKAGEIDVAIGRMADPEMMSGLAFELLLLESLLMVTRPGHPLLSETITLERALHYPAIISPKGTVPRHNTESLLSTQG
FSLPGQYIETLSASLARQMTLQFDYLWFVPSSAVKADIAAGQLIPLPLPTQGMEEAVGILTRNDGELSEAVLAFISTVRG
IAGAVRSA
>Mature_328_residues
MRPPSLVSDGKNSLHWGMKKANLFIQRMRLRHINGFVAVAQERSLSRAADKLNLSQPALSKTLSELEALTGNRLLVRNRQ
GTLLTEQGEQFLGYATRVLEALTAAGHALDRLDDAPARVLRIGALPTTALGMLPQSIGQYQQAHPHSRIQVITGKNAELL
AQLKAGEIDVAIGRMADPEMMSGLAFELLLLESLLMVTRPGHPLLSETITLERALHYPAIISPKGTVPRHNTESLLSTQG
FSLPGQYIETLSASLARQMTLQFDYLWFVPSSAVKADIAAGQLIPLPLPTQGMEEAVGILTRNDGELSEAVLAFISTVRG
IAGAVRSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=302, Percent_Identity=54.635761589404, Blast_Score=335, Evalue=2e-93,
Organism=Escherichia coli, GI1787601, Length=303, Percent_Identity=27.3927392739274, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788887, Length=180, Percent_Identity=33.8888888888889, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787879, Length=179, Percent_Identity=32.9608938547486, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI157672245, Length=186, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1790208, Length=170, Percent_Identity=30, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788748, Length=187, Percent_Identity=28.3422459893048, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790399, Length=145, Percent_Identity=31.0344827586207, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693105, Length=178, Percent_Identity=21.9101123595506, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788296, Length=209, Percent_Identity=28.2296650717703, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787589, Length=127, Percent_Identity=31.496062992126, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788626, Length=155, Percent_Identity=31.6129032258064, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=190, Percent_Identity=28.9473684210526, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786401, Length=305, Percent_Identity=25.5737704918033, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789506, Length=263, Percent_Identity=21.2927756653992, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790262, Length=181, Percent_Identity=27.6243093922652, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35518; Mature: 35518

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPPSLVSDGKNSLHWGMKKANLFIQRMRLRHINGFVAVAQERSLSRAADKLNLSQPALS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHH
KTLSELEALTGNRLLVRNRQGTLLTEQGEQFLGYATRVLEALTAAGHALDRLDDAPARVL
HHHHHHHHHCCCEEEEECCCCCEEHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHE
RIGALPTTALGMLPQSIGQYQQAHPHSRIQVITGKNAELLAQLKAGEIDVAIGRMADPEM
EECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCEEEEECCCCCHHH
MSGLAFELLLLESLLMVTRPGHPLLSETITLERALHYPAIISPKGTVPRHNTESLLSTQG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHCC
FSLPGQYIETLSASLARQMTLQFDYLWFVPSSAVKADIAAGQLIPLPLPTQGMEEAVGIL
CCCCHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHCCCCEECCCCCCCCHHHHHHHH
TRNDGELSEAVLAFISTVRGIAGAVRSA
CCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPPSLVSDGKNSLHWGMKKANLFIQRMRLRHINGFVAVAQERSLSRAADKLNLSQPALS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHH
KTLSELEALTGNRLLVRNRQGTLLTEQGEQFLGYATRVLEALTAAGHALDRLDDAPARVL
HHHHHHHHHCCCEEEEECCCCCEEHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHE
RIGALPTTALGMLPQSIGQYQQAHPHSRIQVITGKNAELLAQLKAGEIDVAIGRMADPEM
EECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCEEEEECCCCCHHH
MSGLAFELLLLESLLMVTRPGHPLLSETITLERALHYPAIISPKGTVPRHNTESLLSTQG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHCC
FSLPGQYIETLSASLARQMTLQFDYLWFVPSSAVKADIAAGQLIPLPLPTQGMEEAVGIL
CCCCHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHCCCCEECCCCCCCCHHHHHHHH
TRNDGELSEAVLAFISTVRGIAGAVRSA
CCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]