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The map label for this gene is sdsB [H]

Identifier: 157369861

GI number: 157369861

Start: 1772736

End: 1773653

Strand: Reverse

Name: sdsB [H]

Synonym: Spro_1618

Alternate gene names: 157369861

Gene position: 1773653-1772736 (Counterclockwise)

Preceding gene: 157369864

Following gene: 157369859

Centisome position: 32.55

GC content: 57.84

Gene sequence:

>918_bases
ATGCTCACCAACCTAAGCGATATTGATCTGCGGCTGCTGCGGGTCTTCGTCGCCGTCGCCGAAGCCCATGGCGTCAGCGC
CGCCCAGGAAACGTTGCTGATGAACCAGTCGACCATCAGCACCCATCTCGCCACCCTGGAAACCCGGCTGGGATTTCGCC
TCTGTCAGCGAGGCCGATCCGGTTTCATGCTGACGCCGAAAGGCGAACGTATGCTGATCGCCTGCCGCACCCTGTTCAAC
GCCGCGCGTGATTTCACCCGCGTCAGTCAGTCGCTGAATGGGCTACTGACCGGGGATTTGCAGATTGGTCTGGTGGATAA
TCTGGTGTCGCTGCCGGGTAATCCCTTCAGTCATGCCATCAAACAATTTCAACGCCGACACCAGGATGTGCAGTTACAGT
GCCGCATTTGCGCCCCCGGCGAAATAGAACAGGGACTGCTGAATCAGCAACTCGATTTGGGCATCGGCTATTTCGGTCAG
CAGTTGGACGAGTTGCAGTATCAGCCCTGGATAGCAGAGACGCAGGCGGTTTATTGCAGCAGCGATCATCCGCTGTTTTC
GCTGGAGCAACCGGGGCATGAACAGATTGAAAATGCACGCTGGGTTAAACGCGGCTATTTGTTGGCACAGCAACTTTGTC
CGCTGGCACCGTTAAATCTCGGCGCCGTCGCCCATCATATGGAAGGGGTCGCCCATTTGGTGCTCAGCGGCGAGTACCTC
GGTTACCTGCCCACCCATTACGCCGCGCGTTGGGTAGAGCAAGGCGTATTGAAACAGTTAGGGGGGCAAGCGCTGTCTTA
TCAGGCGGCATTGAGTCTGGTGACCCGGCCGGGGTTGCCGAAGGAGGCCCTGAGCGCATTGCTGGAGGATTTGCAGCGCG
CCGGAGAGATTTCAGCCGCTATGGTGTTGATGCAGTAA

Upstream 100 bases:

>100_bases
TTTAACATTCATGCCATAAAAAGACAGGTTTACGGCCGCCAGCTTCATTTTGGGGATGTTATGAAATGGTTAATTGCGCG
CTATTACTGCGGAGGAAAGG

Downstream 100 bases:

>100_bases
CCCTGCACGCTGGATAAAAAAATGCCCCGCACTTGGCAGGGCATGTTCTAAACGCTTAGTTGACCGGCATACGCGCCGGA
TCCGGGTACTGATATTCAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLTNLSDIDLRLLRVFVAVAEAHGVSAAQETLLMNQSTISTHLATLETRLGFRLCQRGRSGFMLTPKGERMLIACRTLFN
AARDFTRVSQSLNGLLTGDLQIGLVDNLVSLPGNPFSHAIKQFQRRHQDVQLQCRICAPGEIEQGLLNQQLDLGIGYFGQ
QLDELQYQPWIAETQAVYCSSDHPLFSLEQPGHEQIENARWVKRGYLLAQQLCPLAPLNLGAVAHHMEGVAHLVLSGEYL
GYLPTHYAARWVEQGVLKQLGGQALSYQAALSLVTRPGLPKEALSALLEDLQRAGEISAAMVLMQ

Sequences:

>Translated_305_residues
MLTNLSDIDLRLLRVFVAVAEAHGVSAAQETLLMNQSTISTHLATLETRLGFRLCQRGRSGFMLTPKGERMLIACRTLFN
AARDFTRVSQSLNGLLTGDLQIGLVDNLVSLPGNPFSHAIKQFQRRHQDVQLQCRICAPGEIEQGLLNQQLDLGIGYFGQ
QLDELQYQPWIAETQAVYCSSDHPLFSLEQPGHEQIENARWVKRGYLLAQQLCPLAPLNLGAVAHHMEGVAHLVLSGEYL
GYLPTHYAARWVEQGVLKQLGGQALSYQAALSLVTRPGLPKEALSALLEDLQRAGEISAAMVLMQ
>Mature_305_residues
MLTNLSDIDLRLLRVFVAVAEAHGVSAAQETLLMNQSTISTHLATLETRLGFRLCQRGRSGFMLTPKGERMLIACRTLFN
AARDFTRVSQSLNGLLTGDLQIGLVDNLVSLPGNPFSHAIKQFQRRHQDVQLQCRICAPGEIEQGLLNQQLDLGIGYFGQ
QLDELQYQPWIAETQAVYCSSDHPLFSLEQPGHEQIENARWVKRGYLLAQQLCPLAPLNLGAVAHHMEGVAHLVLSGEYL
GYLPTHYAARWVEQGVLKQLGGQALSYQAALSLVTRPGLPKEALSALLEDLQRAGEISAAMVLMQ

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=183, Percent_Identity=28.9617486338798, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=183, Percent_Identity=30.6010928961749, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33677; Mature: 33677

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTNLSDIDLRLLRVFVAVAEAHGVSAAQETLLMNQSTISTHLATLETRLGFRLCQRGRS
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC
GFMLTPKGERMLIACRTLFNAARDFTRVSQSLNGLLTGDLQIGLVDNLVSLPGNPFSHAI
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCEEEEHHHHHHHCCCCHHHHHH
KQFQRRHQDVQLQCRICAPGEIEQGLLNQQLDLGIGYFGQQLDELQYQPWIAETQAVYCS
HHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEC
SDHPLFSLEQPGHEQIENARWVKRGYLLAQQLCPLAPLNLGAVAHHMEGVAHLVLSGEYL
CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHH
GYLPTHYAARWVEQGVLKQLGGQALSYQAALSLVTRPGLPKEALSALLEDLQRAGEISAA
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHH
MVLMQ
HEECC
>Mature Secondary Structure
MLTNLSDIDLRLLRVFVAVAEAHGVSAAQETLLMNQSTISTHLATLETRLGFRLCQRGRS
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC
GFMLTPKGERMLIACRTLFNAARDFTRVSQSLNGLLTGDLQIGLVDNLVSLPGNPFSHAI
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCEEEEHHHHHHHCCCCHHHHHH
KQFQRRHQDVQLQCRICAPGEIEQGLLNQQLDLGIGYFGQQLDELQYQPWIAETQAVYCS
HHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEC
SDHPLFSLEQPGHEQIENARWVKRGYLLAQQLCPLAPLNLGAVAHHMEGVAHLVLSGEYL
CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHH
GYLPTHYAARWVEQGVLKQLGGQALSYQAALSLVTRPGLPKEALSALLEDLQRAGEISAA
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHH
MVLMQ
HEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]