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The map label for this gene is ybfM [H]

Identifier: 157369473

GI number: 157369473

Start: 1352524

End: 1353927

Strand: Direct

Name: ybfM [H]

Synonym: Spro_1230

Alternate gene names: 157369473

Gene position: 1352524-1353927 (Clockwise)

Preceding gene: 157369472

Following gene: 157369474

Centisome position: 24.82

GC content: 55.2

Gene sequence:

>1404_bases
ATGGGTACGCACGGTGCTCAGCGTAAAACGCTGGCGCTCGCAGTCGCGGGTGCGCTGTTGGGAACAGGGTTTGCCATGGC
CCCTGAGGCGAAAGCCGCAGGATTTATCGATGATTCCACGATGACCGGCGGTGTGTATTACTGGCAGCGTGAACGTGACC
GTAAAGATCTCAACCCGACCAGTGACGATTACAATAAATACACTACCAACCTGTCGCACTCGACCGCCAACCTGAGCCTG
GATTTCGCCTCGGGCTATGCCTGGGACATGTTCGGTTTGGATGTGGGAGCCTTTACCGCCATTGAGCTGGCCGAATCCAG
CGCCAGCGGTCACCCGAATGAAATCGCGTTCTCCTCCAAAAACCGTACCTATGATGAAGACTACTCCGGCGACAAAGGCG
GCATCAGCCTGTACAAGGCCGCCGGTAAATTCAAGTATGGCCCCGTCTGGGCACGCGCCGGTTATATCCAGCCAAGCGGG
CAAACGCTGATTGCCCCACACTGGAGTTTTATGCCGGGCACCTACCGCGGCGCTGAAGCGGGAGCAAACTTTGACTACGG
CGATGCCGGCGCTTTGAGTTTCTCCTACATGTGGACAGATAAATACAAAGCGCCATGGCATATCGAAATGGATGATTTCC
GCCAGAACGATAAAACCACCGGCGTTTCTTATTTGCACTCACTGGGTGCCAAGTACGATTTTAAAAACGACCTGGTGTTG
GAGGCCGCTTTTGGTCAGGCCGAAGGTTATGTGAATCAGTACTTCACCAAGGCATCTTACAAATTCGATCTGGTGGGCAA
CCCGCTGACCACCAGCTACCAGTTCTATGGTACCGAAGACCGCATCAGCGACAAGAACGACCCGAACAGTATTTACGACG
GCCTGGCCTGGCTGCAGGCGCTGACCTTCGGTTACACCACCGGTCAGTTCAACTGGCGTCTGGAAGGAACCATGGTCAAG
GCCGAGGGCAACCAGGGTTACTTCCTGCAACGTATGACCCCAACTTACGCCTCCTCCAACGGTCGTCTCGACGTCTGGTG
GGATAACCGTTCCGACTTCAACGCCAACGGCGAAAAAGCGGTTTACGCCGGGGTAATGTACGACCTGAGCAACTGGAACC
TGCCGGGCATGGCGGTGGGTGGTTCTTACGTTTACGCTTGGGATGCCAAGCCAAGCACCAACCCGATGTACGACCAGAGC
CAGCGCCTGAAAGAGAGCGCCTGGAGCCTGGACGCGTTGTACACCATTCAGGAAGGTCGCGCCAAAGGCACCTTGCTGAA
ACTGCACTACACCCAATATGACAACCACACCAACATCCCAAGCTGGGGTGGCGGTTACGGCAACATCTTCCAGGATGAGA
AAGACGTCAAATTCATGGTTATCGCGCCATTTACCATTTTCTGA

Upstream 100 bases:

>100_bases
ATTTTTTTACCCGATTGGGTTTTTTATTAGCGGTCGTGCAGGGCAGTGGTGAACACGGGCGACTGCAACTTTTAAAGTTA
AGTCAAAGAGGAATTTCATT

Downstream 100 bases:

>100_bases
TGCGTTCCCCGGCGGCAGCGCCGGGGACAGCGTTTTTGACACTTAACGGGAATATAACGATGAAAAAAATCATGCTGATG
TTAGCCGCGGTCGTCACGTT

Product: outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MGTHGAQRKTLALAVAGALLGTGFAMAPEAKAAGFIDDSTMTGGVYYWQRERDRKDLNPTSDDYNKYTTNLSHSTANLSL
DFASGYAWDMFGLDVGAFTAIELAESSASGHPNEIAFSSKNRTYDEDYSGDKGGISLYKAAGKFKYGPVWARAGYIQPSG
QTLIAPHWSFMPGTYRGAEAGANFDYGDAGALSFSYMWTDKYKAPWHIEMDDFRQNDKTTGVSYLHSLGAKYDFKNDLVL
EAAFGQAEGYVNQYFTKASYKFDLVGNPLTTSYQFYGTEDRISDKNDPNSIYDGLAWLQALTFGYTTGQFNWRLEGTMVK
AEGNQGYFLQRMTPTYASSNGRLDVWWDNRSDFNANGEKAVYAGVMYDLSNWNLPGMAVGGSYVYAWDAKPSTNPMYDQS
QRLKESAWSLDALYTIQEGRAKGTLLKLHYTQYDNHTNIPSWGGGYGNIFQDEKDVKFMVIAPFTIF

Sequences:

>Translated_467_residues
MGTHGAQRKTLALAVAGALLGTGFAMAPEAKAAGFIDDSTMTGGVYYWQRERDRKDLNPTSDDYNKYTTNLSHSTANLSL
DFASGYAWDMFGLDVGAFTAIELAESSASGHPNEIAFSSKNRTYDEDYSGDKGGISLYKAAGKFKYGPVWARAGYIQPSG
QTLIAPHWSFMPGTYRGAEAGANFDYGDAGALSFSYMWTDKYKAPWHIEMDDFRQNDKTTGVSYLHSLGAKYDFKNDLVL
EAAFGQAEGYVNQYFTKASYKFDLVGNPLTTSYQFYGTEDRISDKNDPNSIYDGLAWLQALTFGYTTGQFNWRLEGTMVK
AEGNQGYFLQRMTPTYASSNGRLDVWWDNRSDFNANGEKAVYAGVMYDLSNWNLPGMAVGGSYVYAWDAKPSTNPMYDQS
QRLKESAWSLDALYTIQEGRAKGTLLKLHYTQYDNHTNIPSWGGGYGNIFQDEKDVKFMVIAPFTIF
>Mature_466_residues
GTHGAQRKTLALAVAGALLGTGFAMAPEAKAAGFIDDSTMTGGVYYWQRERDRKDLNPTSDDYNKYTTNLSHSTANLSLD
FASGYAWDMFGLDVGAFTAIELAESSASGHPNEIAFSSKNRTYDEDYSGDKGGISLYKAAGKFKYGPVWARAGYIQPSGQ
TLIAPHWSFMPGTYRGAEAGANFDYGDAGALSFSYMWTDKYKAPWHIEMDDFRQNDKTTGVSYLHSLGAKYDFKNDLVLE
AAFGQAEGYVNQYFTKASYKFDLVGNPLTTSYQFYGTEDRISDKNDPNSIYDGLAWLQALTFGYTTGQFNWRLEGTMVKA
EGNQGYFLQRMTPTYASSNGRLDVWWDNRSDFNANGEKAVYAGVMYDLSNWNLPGMAVGGSYVYAWDAKPSTNPMYDQSQ
RLKESAWSLDALYTIQEGRAKGTLLKLHYTQYDNHTNIPSWGGGYGNIFQDEKDVKFMVIAPFTIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786897, Length=473, Percent_Identity=74.8414376321353, Blast_Score=730, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 52027; Mature: 51896

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTHGAQRKTLALAVAGALLGTGFAMAPEAKAAGFIDDSTMTGGVYYWQRERDRKDLNPT
CCCCCCCCCEEHHHHHHHHHHCCCEECCCCCCCCEECCCCCCCCEEEEECCCCCCCCCCC
SDDYNKYTTNLSHSTANLSLDFASGYAWDMFGLDVGAFTAIELAESSASGHPNEIAFSSK
CCCCHHEECCCCCCEEEEEEEECCCCEEEEECCCCCCEEEEEEHHCCCCCCCCEEEECCC
NRTYDEDYSGDKGGISLYKAAGKFKYGPVWARAGYIQPSGQTLIAPHWSFMPGTYRGAEA
CCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCEECCCCCEEEECCCCCCCCCCCCCCC
GANFDYGDAGALSFSYMWTDKYKAPWHIEMDDFRQNDKTTGVSYLHSLGAKYDFKNDLVL
CCCCCCCCCCCEEEEEEEECCCCCCEEEEHHHHCCCCCCHHHHHHHHCCCCCCCCCCEEE
EAAFGQAEGYVNQYFTKASYKFDLVGNPLTTSYQFYGTEDRISDKNDPNSIYDGLAWLQA
EEECCCCCHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
LTFGYTTGQFNWRLEGTMVKAEGNQGYFLQRMTPTYASSNGRLDVWWDNRSDFNANGEKA
HHHCEECCEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEE
VYAGVMYDLSNWNLPGMAVGGSYVYAWDAKPSTNPMYDQSQRLKESAWSLDALYTIQEGR
EEEEEEEECCCCCCCCEEECCCEEEEECCCCCCCCCCCHHHHHHHHHCCEEEEEEEECCC
AKGTLLKLHYTQYDNHTNIPSWGGGYGNIFQDEKDVKFMVIAPFTIF
CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEC
>Mature Secondary Structure 
GTHGAQRKTLALAVAGALLGTGFAMAPEAKAAGFIDDSTMTGGVYYWQRERDRKDLNPT
CCCCCCCCEEHHHHHHHHHHCCCEECCCCCCCCEECCCCCCCCEEEEECCCCCCCCCCC
SDDYNKYTTNLSHSTANLSLDFASGYAWDMFGLDVGAFTAIELAESSASGHPNEIAFSSK
CCCCHHEECCCCCCEEEEEEEECCCCEEEEECCCCCCEEEEEEHHCCCCCCCCEEEECCC
NRTYDEDYSGDKGGISLYKAAGKFKYGPVWARAGYIQPSGQTLIAPHWSFMPGTYRGAEA
CCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCEECCCCCEEEECCCCCCCCCCCCCCC
GANFDYGDAGALSFSYMWTDKYKAPWHIEMDDFRQNDKTTGVSYLHSLGAKYDFKNDLVL
CCCCCCCCCCCEEEEEEEECCCCCCEEEEHHHHCCCCCCHHHHHHHHCCCCCCCCCCEEE
EAAFGQAEGYVNQYFTKASYKFDLVGNPLTTSYQFYGTEDRISDKNDPNSIYDGLAWLQA
EEECCCCCHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
LTFGYTTGQFNWRLEGTMVKAEGNQGYFLQRMTPTYASSNGRLDVWWDNRSDFNANGEKA
HHHCEECCEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEE
VYAGVMYDLSNWNLPGMAVGGSYVYAWDAKPSTNPMYDQSQRLKESAWSLDALYTIQEGR
EEEEEEEECCCCCCCCEEECCCEEEEECCCCCCCCCCCHHHHHHHHHCCEEEEEEEECCC
AKGTLLKLHYTQYDNHTNIPSWGGGYGNIFQDEKDVKFMVIAPFTIF
CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]