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The map label for this gene is ybhD [H]

Identifier: 157369360

GI number: 157369360

Start: 1231922

End: 1232854

Strand: Direct

Name: ybhD [H]

Synonym: Spro_1117

Alternate gene names: 157369360

Gene position: 1231922-1232854 (Clockwise)

Preceding gene: 157369355

Following gene: 157369364

Centisome position: 22.61

GC content: 52.52

Gene sequence:

>933_bases
ATGTCTGAACCCTGGCGCCGATTACCCGCGCTTTCTCTAAAGCAGATCCAATATTTCGTCACCCTGGCGCAGCTACGGCA
TTTTACCGATACCGCGAACCGTCTGGCGATCAGCCAACCGGCATTGAGTAGCGCATTGCGGCAGATAGAGACGGTGCTGG
GTGGCAAGCTGGTGAACCGTACCGCTTCAGCAGTGACGCTGACTGAACAGGGTGCAGCTATCTTGCCGCATGCCGAACGA
CTGCTGAATGTGGCGCAGGCGGCTTTTGATGATATGCAGCGCATCATGCTGGCAGGCGGGGATGGTACTGTACGTATCGG
GCTGGTGCCTTCGGTCAGCGGGCTGTTGTTTCCGGCCGTGCCGCAATTGCTGGCGGCAAATTTTCCGCGTTTGCGGATAG
AATTTCACGATCAAACCAATGACTCATTGTTATTGCAATTAGAGAATGGGTTGATCGATTTTGGCATTGGCGCGCTCGAC
AGTTCGGTGCCGGAATCGCTGGAGATATATCCGTTGCAGGAGGATCCGTTCGTGGTGGTGATGCGCCGTGACGATCCGCT
GGCTGAATCTCATCATCTGCCATGGCGTCAATTAACCCGACGAGATATCGCGGTTTTCTCCAAGGGGAATATCAGTCGGT
TGGTTTTGGCGCTGGCGGAAAGCCATCGTCTGAATTTAACCGCCCGCTTCCAGGTGGATTTTTTGGAGACGTTATATGGG
TTGGTGCGTTCGAAATTGGCGGTGGCTATTTTACCGCAACTTTACACCACACATTTGAACGATGATGAATTAACCGTGGT
TCAACTACAGCAGCCGATGCTTAGCCGCACCGTGGCGTTAATGCGCAGTGCGCATCGGAACCATCCGGCGTTAATTGAGG
ATTGTTTCCAATTGTTATTACAGGATTTTCAACAACGAATGAAAGTGCAGTAA

Upstream 100 bases:

>100_bases
GGGCGGCGGACTGGCTTTGCACAGATGATTTAATTTATCGCCTGATAAGAAACGTTTATGCTGTCGCAAACGTTTACTTT
TTAGCGGACGGAAAGCTGAC

Downstream 100 bases:

>100_bases
GTCAATGAGAAAAATAGGAAGATAGAGGTAACATTGAGGCCGACGAATGTATCGGCTCAACGCGTTTTTAGCCTGGATTA
TCTTACGAATTTCCAAACGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MSEPWRRLPALSLKQIQYFVTLAQLRHFTDTANRLAISQPALSSALRQIETVLGGKLVNRTASAVTLTEQGAAILPHAER
LLNVAQAAFDDMQRIMLAGGDGTVRIGLVPSVSGLLFPAVPQLLAANFPRLRIEFHDQTNDSLLLQLENGLIDFGIGALD
SSVPESLEIYPLQEDPFVVVMRRDDPLAESHHLPWRQLTRRDIAVFSKGNISRLVLALAESHRLNLTARFQVDFLETLYG
LVRSKLAVAILPQLYTTHLNDDELTVVQLQQPMLSRTVALMRSAHRNHPALIEDCFQLLLQDFQQRMKVQ

Sequences:

>Translated_310_residues
MSEPWRRLPALSLKQIQYFVTLAQLRHFTDTANRLAISQPALSSALRQIETVLGGKLVNRTASAVTLTEQGAAILPHAER
LLNVAQAAFDDMQRIMLAGGDGTVRIGLVPSVSGLLFPAVPQLLAANFPRLRIEFHDQTNDSLLLQLENGLIDFGIGALD
SSVPESLEIYPLQEDPFVVVMRRDDPLAESHHLPWRQLTRRDIAVFSKGNISRLVLALAESHRLNLTARFQVDFLETLYG
LVRSKLAVAILPQLYTTHLNDDELTVVQLQQPMLSRTVALMRSAHRNHPALIEDCFQLLLQDFQQRMKVQ
>Mature_309_residues
SEPWRRLPALSLKQIQYFVTLAQLRHFTDTANRLAISQPALSSALRQIETVLGGKLVNRTASAVTLTEQGAAILPHAERL
LNVAQAAFDDMQRIMLAGGDGTVRIGLVPSVSGLLFPAVPQLLAANFPRLRIEFHDQTNDSLLLQLENGLIDFGIGALDS
SVPESLEIYPLQEDPFVVVMRRDDPLAESHHLPWRQLTRRDIAVFSKGNISRLVLALAESHRLNLTARFQVDFLETLYGL
VRSKLAVAILPQLYTTHLNDDELTVVQLQQPMLSRTVALMRSAHRNHPALIEDCFQLLLQDFQQRMKVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=271, Percent_Identity=26.9372693726937, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1790399, Length=273, Percent_Identity=26.7399267399267, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788748, Length=280, Percent_Identity=27.5, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787879, Length=248, Percent_Identity=27.8225806451613, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=273, Percent_Identity=24.9084249084249, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788887, Length=260, Percent_Identity=28.4615384615385, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI2367136, Length=182, Percent_Identity=29.6703296703297, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=177, Percent_Identity=27.683615819209, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788297, Length=254, Percent_Identity=27.1653543307087, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081904, Length=178, Percent_Identity=28.6516853932584, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789506, Length=245, Percent_Identity=21.6326530612245, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34733; Mature: 34602

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPWRRLPALSLKQIQYFVTLAQLRHFTDTANRLAISQPALSSALRQIETVLGGKLVNR
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCHHHHC
TASAVTLTEQGAAILPHAERLLNVAQAAFDDMQRIMLAGGDGTVRIGLVPSVSGLLFPAV
CCCEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCHHHHHHH
PQLLAANFPRLRIEFHDQTNDSLLLQLENGLIDFGIGALDSSVPESLEIYPLQEDPFVVV
HHHHHCCCCEEEEEECCCCCCEEEEEEECCCEEECCCHHCCCCCCCEEEEEECCCCEEEE
MRRDDPLAESHHLPWRQLTRRDIAVFSKGNISRLVLALAESHRLNLTARFQVDFLETLYG
EECCCCCCCCCCCCHHHHHHHHHHEECCCCHHHHHHHHHHCCCEEEEEEEEHHHHHHHHH
LVRSKLAVAILPQLYTTHLNDDELTVVQLQQPMLSRTVALMRSAHRNHPALIEDCFQLLL
HHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
QDFQQRMKVQ
HHHHHHHCCC
>Mature Secondary Structure 
SEPWRRLPALSLKQIQYFVTLAQLRHFTDTANRLAISQPALSSALRQIETVLGGKLVNR
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHCCHHHHC
TASAVTLTEQGAAILPHAERLLNVAQAAFDDMQRIMLAGGDGTVRIGLVPSVSGLLFPAV
CCCEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCHHHHHHH
PQLLAANFPRLRIEFHDQTNDSLLLQLENGLIDFGIGALDSSVPESLEIYPLQEDPFVVV
HHHHHCCCCEEEEEECCCCCCEEEEEEECCCEEECCCHHCCCCCCCEEEEEECCCCEEEE
MRRDDPLAESHHLPWRQLTRRDIAVFSKGNISRLVLALAESHRLNLTARFQVDFLETLYG
EECCCCCCCCCCCCHHHHHHHHHHEECCCCHHHHHHHHHHCCCEEEEEEEEHHHHHHHHH
LVRSKLAVAILPQLYTTHLNDDELTVVQLQQPMLSRTVALMRSAHRNHPALIEDCFQLLL
HHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
QDFQQRMKVQ
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]