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The map label for this gene is ddpA [H]

Identifier: 157368798

GI number: 157368798

Start: 611437

End: 613005

Strand: Reverse

Name: ddpA [H]

Synonym: Spro_0553

Alternate gene names: 157368798

Gene position: 613005-611437 (Counterclockwise)

Preceding gene: 157368799

Following gene: 157368794

Centisome position: 11.25

GC content: 60.17

Gene sequence:

>1569_bases
ATGAAAGCCAAAGTCCTGCCGCTGTTAATGCTTGCCGCCCTATCCACCGCCACGCTGGCCGCCACGCCACCCAATACGCT
GGTGGTGGTGCAATCGCTGGATGACATCGTCAGCCTCGATCCGGCGGAAGCCAACGAACTGTCCAGCATCCAGACCGTGC
CAAGCCTGTATCAGCGGCTGGTGCAGGCGGATCGCGACGATCCGGCGAAGGTGGTGCCGGTGCTGGCGGAAAGCTGGCAG
GGCGACGCCGTCGCCAAAACCCTGACGATCAAATTGCGTCCACAGGCAGTATTTGCCTCCGGTAACCCGCTGACCGCCGA
TGACGTGATCTTTTCCTACAGCCGCGCGGTGAAGATGAACAAGTCACCGGCATTTATCCTCAACGTGCTCGGCTGGCAGC
CGGATAACATCGACGCACAGCTGAAGAAAATCGACGACCATAGCCTGCAACTGAGCTGGACGGCAGACGTCAGCCCAGCG
GTGGCGCTGAATATTCTCTCTACGCCGATCGCCTCGATCGTCGACGGCAAGGCGGTGCAGGCCAACATCAAAGACGGTGA
CTACGGTAACGCCTGGCTGAAAATGCACTCCGCCGGTAGCGGGCCGTTCAAAATGCGCGTTTATCAACCGCATCAGGCGA
TTGTGCTGGATGCCAACCCGACGTCGCCGGGTAGCAAGCCGCTGCTGAAAAGCATCATCATTAAAAGCGTGCCAGACTCC
GCCACCCGCCGCCTGTTGATCCAGCAGGGTGACGCCGACGTAGCACGCGAACTTGGCCCGGACCAGACCGTGGCGCTGAA
AAATCAGCCGGGCGTGAAGGTGCTGGAGATCCCGTCCGCCGAGCAAAACTATCTGGTGTTCAACACCGGCAATACCGCCA
ATCCGCTGCTGAAGAACCCGGCCTTCTGGGAAGCGGCGCGTTATCTGGTCGACTATCAGGGCATCACCAAAGATCTGCTG
AAGGGCCAGTATTTTGTCCACCAGAGCTTCCTGCCGGTCGGCTTGCCGGGCGCGCTGAAAGACAATCCGTTCAGCTTCGA
TCCGGCCAAAGCCAAGGCGATCCTGGCCAAGGCCGGCATCACCAACGCGGCTCTGACGCTGGACGTGGAAAACAAACCGC
CGTTTATCACCATCGCCCAGGCGCTGCAGGCCAGCTTTGCCGAGGGCGGCGTGAAGCTGGAACTGTTGCCGGCGGCTGGC
AGTCAGGTCTATTCGCGGGTGCGCGCCCGTCAGCATCAGGCAGCGATCCGTCTGTGGATCCCGGACTATTTTGACGCCCA
CTCCAATGCCAGCGCCTTCGCCTATAACGACGGCAAGACCAGTACGGTAGCGGGCCTCAACGGCTGGCAGATCCCGCAGC
TAAGCCAACAAACATTGGCGGCGGTGGCCGAGGCCGATCCGGCCAAACGCACCGCACTCTATACCGCCATGCAGCAGGAA
CTGCAGCGCAGTTCGCCGTATGTGTTTATCGATCAGGCAAAAACCGAAGTGGTGCTGCGCGATAACGTCAAAGGCTACCA
GCAGGGTCTGAACGCCGACATGGTCTATTACGATCGCGTCAGCAAATAA

Upstream 100 bases:

>100_bases
AAGGTTCTACCGTGCATGCTGACGGCGAAACGCCGCGAAAACTAACGATAACAATGACTTCTCGGCACCGGAGCCCGCGG
TGCATTCAGGGGAAATATCA

Downstream 100 bases:

>100_bases
GCGGCTCCCGGCGCAGGGTGACTTAACGCCTTGCGCCGGGCCATTCCGGCGTTTATCGGGTCATGCGCGCCGCGTTATAG
CAGGTGATATCCACTTCAAC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MKAKVLPLLMLAALSTATLAATPPNTLVVVQSLDDIVSLDPAEANELSSIQTVPSLYQRLVQADRDDPAKVVPVLAESWQ
GDAVAKTLTIKLRPQAVFASGNPLTADDVIFSYSRAVKMNKSPAFILNVLGWQPDNIDAQLKKIDDHSLQLSWTADVSPA
VALNILSTPIASIVDGKAVQANIKDGDYGNAWLKMHSAGSGPFKMRVYQPHQAIVLDANPTSPGSKPLLKSIIIKSVPDS
ATRRLLIQQGDADVARELGPDQTVALKNQPGVKVLEIPSAEQNYLVFNTGNTANPLLKNPAFWEAARYLVDYQGITKDLL
KGQYFVHQSFLPVGLPGALKDNPFSFDPAKAKAILAKAGITNAALTLDVENKPPFITIAQALQASFAEGGVKLELLPAAG
SQVYSRVRARQHQAAIRLWIPDYFDAHSNASAFAYNDGKTSTVAGLNGWQIPQLSQQTLAAVAEADPAKRTALYTAMQQE
LQRSSPYVFIDQAKTEVVLRDNVKGYQQGLNADMVYYDRVSK

Sequences:

>Translated_522_residues
MKAKVLPLLMLAALSTATLAATPPNTLVVVQSLDDIVSLDPAEANELSSIQTVPSLYQRLVQADRDDPAKVVPVLAESWQ
GDAVAKTLTIKLRPQAVFASGNPLTADDVIFSYSRAVKMNKSPAFILNVLGWQPDNIDAQLKKIDDHSLQLSWTADVSPA
VALNILSTPIASIVDGKAVQANIKDGDYGNAWLKMHSAGSGPFKMRVYQPHQAIVLDANPTSPGSKPLLKSIIIKSVPDS
ATRRLLIQQGDADVARELGPDQTVALKNQPGVKVLEIPSAEQNYLVFNTGNTANPLLKNPAFWEAARYLVDYQGITKDLL
KGQYFVHQSFLPVGLPGALKDNPFSFDPAKAKAILAKAGITNAALTLDVENKPPFITIAQALQASFAEGGVKLELLPAAG
SQVYSRVRARQHQAAIRLWIPDYFDAHSNASAFAYNDGKTSTVAGLNGWQIPQLSQQTLAAVAEADPAKRTALYTAMQQE
LQRSSPYVFIDQAKTEVVLRDNVKGYQQGLNADMVYYDRVSK
>Mature_522_residues
MKAKVLPLLMLAALSTATLAATPPNTLVVVQSLDDIVSLDPAEANELSSIQTVPSLYQRLVQADRDDPAKVVPVLAESWQ
GDAVAKTLTIKLRPQAVFASGNPLTADDVIFSYSRAVKMNKSPAFILNVLGWQPDNIDAQLKKIDDHSLQLSWTADVSPA
VALNILSTPIASIVDGKAVQANIKDGDYGNAWLKMHSAGSGPFKMRVYQPHQAIVLDANPTSPGSKPLLKSIIIKSVPDS
ATRRLLIQQGDADVARELGPDQTVALKNQPGVKVLEIPSAEQNYLVFNTGNTANPLLKNPAFWEAARYLVDYQGITKDLL
KGQYFVHQSFLPVGLPGALKDNPFSFDPAKAKAILAKAGITNAALTLDVENKPPFITIAQALQASFAEGGVKLELLPAAG
SQVYSRVRARQHQAAIRLWIPDYFDAHSNASAFAYNDGKTSTVAGLNGWQIPQLSQQTLAAVAEADPAKRTALYTAMQQE
LQRSSPYVFIDQAKTEVVLRDNVKGYQQGLNADMVYYDRVSK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=513, Percent_Identity=30.7992202729045, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI1789966, Length=475, Percent_Identity=25.4736842105263, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1787052, Length=488, Percent_Identity=25, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789887, Length=467, Percent_Identity=25.6959314775161, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787551, Length=535, Percent_Identity=23.3644859813084, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787495, Length=540, Percent_Identity=23.1481481481481, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 56460; Mature: 56460

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKVLPLLMLAALSTATLAATPPNTLVVVQSLDDIVSLDPAEANELSSIQTVPSLYQRL
CCCHHHHHHHHHHHHHHEEEECCCCCEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHH
VQADRDDPAKVVPVLAESWQGDAVAKTLTIKLRPQAVFASGNPLTADDVIFSYSRAVKMN
HHCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCEEEECCCCCCHHHHHHHHHHHEECC
KSPAFILNVLGWQPDNIDAQLKKIDDHSLQLSWTADVSPAVALNILSTPIASIVDGKAVQ
CCCEEEEEEECCCCCCCCHHHEECCCCEEEEEEECCCCCHHHHHHHHCCHHHHHCCCEEE
ANIKDGDYGNAWLKMHSAGSGPFKMRVYQPHQAIVLDANPTSPGSKPLLKSIIIKSVPDS
EECCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHCCCCH
ATRRLLIQQGDADVARELGPDQTVALKNQPGVKVLEIPSAEQNYLVFNTGNTANPLLKNP
HHHEEEEECCCHHHHHHCCCCCEEEECCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCC
AFWEAARYLVDYQGITKDLLKGQYFVHQSFLPVGLPGALKDNPFSFDPAKAKAILAKAGI
CHHHHHHHHHHHCCHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
TNAALTLDVENKPPFITIAQALQASFAEGGVKLELLPAAGSQVYSRVRARQHQAAIRLWI
CCEEEEEEECCCCCEEEHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCEEEEEC
PDYFDAHSNASAFAYNDGKTSTVAGLNGWQIPQLSQQTLAAVAEADPAKRTALYTAMQQE
CCHHCCCCCCCEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
LQRSSPYVFIDQAKTEVVLRDNVKGYQQGLNADMVYYDRVSK
HHHCCCEEEEECCCEEEEEECCCHHHHCCCCCCEEEEECCCC
>Mature Secondary Structure
MKAKVLPLLMLAALSTATLAATPPNTLVVVQSLDDIVSLDPAEANELSSIQTVPSLYQRL
CCCHHHHHHHHHHHHHHEEEECCCCCEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHH
VQADRDDPAKVVPVLAESWQGDAVAKTLTIKLRPQAVFASGNPLTADDVIFSYSRAVKMN
HHCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCEEEECCCCCCHHHHHHHHHHHEECC
KSPAFILNVLGWQPDNIDAQLKKIDDHSLQLSWTADVSPAVALNILSTPIASIVDGKAVQ
CCCEEEEEEECCCCCCCCHHHEECCCCEEEEEEECCCCCHHHHHHHHCCHHHHHCCCEEE
ANIKDGDYGNAWLKMHSAGSGPFKMRVYQPHQAIVLDANPTSPGSKPLLKSIIIKSVPDS
EECCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHCCCCH
ATRRLLIQQGDADVARELGPDQTVALKNQPGVKVLEIPSAEQNYLVFNTGNTANPLLKNP
HHHEEEEECCCHHHHHHCCCCCEEEECCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCC
AFWEAARYLVDYQGITKDLLKGQYFVHQSFLPVGLPGALKDNPFSFDPAKAKAILAKAGI
CHHHHHHHHHHHCCHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
TNAALTLDVENKPPFITIAQALQASFAEGGVKLELLPAAGSQVYSRVRARQHQAAIRLWI
CCEEEEEEECCCCCEEEHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCEEEEEC
PDYFDAHSNASAFAYNDGKTSTVAGLNGWQIPQLSQQTLAAVAEADPAKRTALYTAMQQE
CCHHCCCCCCCEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
LQRSSPYVFIDQAKTEVVLRDNVKGYQQGLNADMVYYDRVSK
HHHCCCEEEEECCCEEEEEECCCHHHHCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]